Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      <---------ICU4                            <-----------GT1    --------->ATHB51                          --------->YAB1 --------->YAB1   --------->ICU4                          --------->YAB1   <------ZmHOX2a(2)   <---------YAB1                         <---------YAB1<---------HSFB2a(2) --------->YAB1                          <---------AHL20(2)--------->ARR11(3) ---->ZAT14             --------->YAB1   --------->AHL20(2)<---------ARR11(3)                  <----- -----ZAT18      --------->ANAC46   <-------TEIL        --------->HSFB2a(2)        <---------MYB52(2)   tactcataatttctcatacccacaattcataaaaccgatacattttaataacaatcttcgagatcataaacacaaaatcgaaatagctaacctcgccgat  2712700                                                                ------>ZmHOX2a(1)                                                                --------->LBD16   <---------ANAC58                                                              ===============================RAV                                                              ----------->RAV1(2) <---------ANAC58          <---------At4g35610                            <-----------GT1         <-----------RAV1(1)-   --------->ZAT18                          ---------->DOF2<---------At4g35610   <---------AtMYB61 --  <------ZmHOX2a(1)            <---------YAB1          <-----------HVH21     <----------DOF2      --- ----ARR14(2)                  <---------TOE2(3)      <----------DOF2 <---------DAG2 ------>NtERF2---   attaggacactgagcttcttcacaaacagtattgagattgagacgagaaagggactctttcacctcctgaaacctttcgccttgtggtgccttctgtctc  2712800                                    <---------AtLEC2                         ------>ZmHOX2a(2)                        <---------GLK1(1)   <---------ZAT2       <------ZmHOX2a(2)  ------>MYB46(1)       --------->GLK1(1)  --------->ANAC58     <---------ARR14(2)  ------>MYB83         <-----------ARR10  --------->ANAC58     <---------AGP1                         ------>ZmHOX2a(1) ------>GAMYB          <---------ARR11(3)                     --------->LBD16 ------->MYB46(3)      --------->ARR11(3)                   ----------->RAV1(2) ------>ANAC58         --------->ARR14(2)--------->PCF2    ------>ZmHOX2a(1) ------>ANAC58        <---------CCA1(2)  ------->TEIL --------->GLK1(1)   aaccaagcaggtttcttcacattcggatctctccctgtgaatggacccatcttcggcattcctcctgggtaaggctcactcttcttcccttctaactcca  2712900                                                                                    <---------ARR14(2)                                      ------>NtERF2                   --------->ANAC58                                     <---------ETT(2)                 --------->ANAC58                            <---------ALFIN1                --------->LBD16         --------->ARR14(2)                          ------>ZmHOX2a(1)                 <------NtERF2 --------->HSFC1(2)                       --------->HSFB2a(1)        ------>NtERF2      <------NtERF2  <---------GLK1(2)                      <---------ARR14(2)       <---------ATERF1(1)  ------>NtERF2 --------->LBD16                      --------->ARR14(2) ---------->DOF2   --------->ANAC58     --------->LBD16<-----                      ------->TEIL ------>NtERF2 --------->DEAR3(1)<----------ID1--------->LBD16-----                <----------ID1    ----------->HVH21        --------->ANAC58     <---------LBD16<-----              <------ZmHOX2a(1)   --------->DEAR3(1)      <---------LBD16 <---------HSFC1(2)   ------   tcaaactcttcttcaaggacgacgaatcctccatctccgacgacaaagacaccgccttggtccgcaatggcgacgaaacatccccggattcgcatcggat  2713000                                         ----------->RAV1(2)                                        --------->GLK1(2)                  <---------ANAC58                                      --------->HSFC1(2)                   <---------ANAC58                                      <---------HSFC1(2)                   --------->ANAC55(2)                                  <---------REM1(1)                        <---------ANAC55(2)                               <---------YAB1                              <---------ANAC46       <--                               --------->ICU4                         <------MYB83              <---- ----GLK1(2)                 --------->YAB1                         --------->ALFIN1            ----- ---->GLK1(2)               --------->ICU4 --------->HSFB2a(2)   --------->DAG2          --------->YAB1 ----ARR14(2)          --------->HSFB2a(2) <---------HSFB2a(2)  ---------->DOF2         --------->ICU4 --->ARR14(2)       <-----------GT1  ------->TEIL    <------ZmHOX2a(2)<------MYB46(1)   <---------ATHB12   tctgaaacccaaattcaagaatttactggaatgatgatgaagcttctgggtcgagatcgaaattgagaaagtgggtttcgtaattgagcaatgatgcatc  2713100                                    ----------->GT1                                 *TSS                       <---------AHL20(2)                                                    --------         <---------ANAC58    <---------ANAC58                                                <-------         <---------ANAC58    <---------ANAC58                                     --------->REM1(2)         <---------ANAC46    <---------ANAC46                                    --------->ALFIN1 -------YAB1          <---------ARR11(3)       ----------->GT1                  <---------ZAT14     < -----ICU4            <---------AHL20(1)     <---------LBD16                   --------->ALFIN1    <- ---->YAB1            --------->ARR11(3) <---------ARR14(2)                ------->GAMYB --------->GLK1(2)   atgagttttttgcgtatgtgtgtatatatttgtgtgtgaggcaaaactggggaaaaaatgaaattaggcgatttcaacagagtgtggagagactctgctt  2713200                              --------->WOX13(1)                            ------------>CBF                           -------->P                          ------->GAMYB                         <---------MYB111(1)                         --------->MYB46(3)                         <---------MYB111(2)                         <---------MYB55(2)                         <---------MYB52(2)                         <---------MYB46(2)                      --------->DEAR3(1)                                           <---------------AGL15                    ------>NtERF2                                                  --------------->AGL15                    --------->LBD16                                               <-----------------AGL3                   --------->ANAC46                                               ----------------->AGL2                --------->ARR14(2)         ---------->DOF2                <---------ARR11(3)                <---------ARR14(2)     ----------->RAV1(1)                --------->AHL20(1)               <---------GLK1(1)       ------>NtERF2                      --------->ARR11(3)        --------------------->WRI1    --------->ANAC46                    --------->AHL20(2)        <----------DOF2------>NtERF2 <---------ZAT18               ----------->GT1----------------->AGL3 ->At4g35610   <----------TaMYB80    --------->ZAT18            --------->YAB1    ----------------->AGL1 --At4g35610   --------->GLK1(1)  <---------At5g28300  --------->At4g35610<---------AHL20(2) ---------MYB52(1)<---------LBD16<---------ICU4        ----------->GT1    <---------AHL20(1) ------GAMYB  ---------->TaMYB80<---------ATHB12  >>>>>>>>>TBF1<---------YAB1   <----------ID1   cggttagcaactttgggatatccgccaactaccaattactgcgccaaaagaagaagaagctaaatatgatagttaatatattgggccaaatatagaagcc  2713300                                    --------->TOE2(3)                     <---------ARR11(3)                     --------->ARR11(3)                    <---------CCA1(2)  <------------CBF                    <---------RVE1(1) --------->ATHB51                    --------->GLK1(1)--------->ICU4                <---------TOE2(3)----------->RAV1(1)     --------->CCA1(2)           <---------ALFIN1                                 --------->MYB52(1)    <---------ARR11(3)    ---------->DOF2                          --------->ANAC58              ----    --------->ARR11(3) --------->TOE2(3)  <-----------HVH21        --------->ANAC58              ----  ----------->ARR10 <---------GLK1(1)<---------YAB1        ------------>CBF---------->ID1        ----   cagtaagatatgtttattagggatatcttaaagcccaacattattgtcactgggactctagcccaatacaggcatttgtcttaaaaacggcgaagtctca  2713400                                     <---------ALFIN1                                     --------->AtMYB61                                     --------------->AGL15                                     <---------------AGL15                                    <-----------------AGL1                                  <---------ALFIN1                                  --------->AtMYB61                                  --------->DEAR3(1)                                 --------->MYB46(3)                               <---------ALFIN1                               --------->AtMYB61                               --------->DEAR3(1)                                                <---         --------->CCA1(2)    --------->MYB46(3)                                                -----    ------->GAMYB           --------->ANAC46                                                   ------ --------->MYB52(1)         --------->AtMYB61                                                  <----- ----------->RAV1(1)        <---------ALFIN1                                    <---------ARR11(3) ----->ANAC46              --------->MYB46(3)                                   --------->ARR11(3) ----->ANAC58            <-----------GT1   <---------HSFB2a(2)              ---------->DOF2    <----- ----->ANAC58 *TSS     <-----------HVH21   --------->HSFB2a(2)     <-----------GT1       <----------DOF2   agccaacagagatagggttttcgattgtcaccaccaccaccacttctggtaacgcagtgtctctgattttcacttggttaaagacctctagcttcacggt  2713500                       <------NtERF2                      <---------RAP2.6(3)                      ------>NtERF2                      <-----------HVH21                      <-----------TGA1                     --------->RRTF1(2)                     --------->RRTF1(3)                     --------->RAP2.3(2)                     --------->RAP2.3(3)                     <---------ATERF1(2)                     --------->RAP2.6(2)                     --------->ATERF1(2)                     --------->DEAR3(1)                     --------->bZIP60(1)                   <---------AtMYB61                     --------->ANAC46                      <---------DEAR3(1)                     --------->O2                          --------->ALFIN1                    --------->RAP2.3(1)                   <------NtERF2                    --------->ERF1                      <---------ANAC46                    <------NtERF2                       <---------ANAC58                    --------->ATERF1(1)                 <---------ANAC58                    --------->RRTF1(1)            <<<<<<<<<WRKY18              ------->PIF5    --------->YAB1 <---------ATERF1(1)          <-----------HVH21          --------->ZAT18   <---------YAB1  ------>NtERF2 ===================HOX2a_HOX2a            <---------ZAT18 --------->YAB1   --------->DEAR3(1)         =============================HOX2a_HOX2a   <---------GLK1(2) ------WRKY12     <---------ATERF1(2)        ------>ZmHOX2a(2)   <---------ANAC46 <------ZmHOX2a(1) ---->WRKY18(1)   --------->ATERF1(2)      --------->ARR11(3) --------->ALFIN1 <-------PIF5 --->At5g28300   <---------RAP2.6(2)  <-----------GT1  <---------LBD16    <---------ANAC58    <------ ------HVH21   <-----------RAV1(1)    --------->MYB52(1)<---------DEAR3(1)<---------ANAC58    ------- ---ZAP1   <---------DAG2        <------ZmHOX2a(1)<---------WRKY12 <------ZmHOX2a(1)--------->At4g35610   caaacatcataaaccttttgccgccgtcactaataggaattaactgatctcgtcaatggcggaggtggaggagattgcgcacgaggagcagaatatcgag  2713600  Previous    Next  AGI:  At5g08415.1    Description:  lipoic acid synthase family protein. similar to LIP1 (LIPOIC ACID SYNTHASE 1), lipoic acid synthase [Arabidopsis thaliana] (TAIR:AT2G20860.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65976.1); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Elongator protein 3/MiaB/NifB (InterPro:IPR006638); contains InterPro domain Lipoate synthase; (InterPro:IPR003698); contains InterPro domain Aldolase-type TIM barrel; (InterPro:IPR013785) Range:  from: 2710818    to: 2713133    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g08420.1    Description:  RNA binding. similar to Os10g0452800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064737.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70862.1); contains InterPro domain K Homology; (InterPro:IPR004087) Range:  from: 2713414    to: 2716180    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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