Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      --------->TOE2(3)                                                                    <---------MYB59                                                                  ------->TEIL                                                               <---------REM1(1)                                                              --------------->AtSPL8                                                              <---------------AtSPL3              <---------MYB52(1)                              <---------------AtSPL8             --------->TOE2(3)                              <---------MYB46(3)            ----------->GT1                                <---------WOX13(1)    ---------->DOF2       <------MYB83                   ---------->DOF2    --------->ATHB12 --------->ANAC58       <------MYB46(1)          <---------ZAT6         <---------WOX13(1) --------->ANAC46   <---------ARR14(2)    <---------ANAC46            --------->ATHB12     --------->ANAC58 -------TOE2(3)         <---------LBD16            <---------WOX13(1) ---------->DOF2         <------   aagaatatttggtctcgttaatttgtttcggagagtgatagaaagagagagagattgattgattgttgtacctaaaacgctataaaagctctgtttttac  2681800                             <---------ICU4                            --------->ICU4                            <---------YAB1<---------ATHB12                   <-----------GT1    <---------ATHB12              ----------->GT1--------->ATHB12      <----------DOF2        ---------->DOF2 -----GT1--------->ZAT14 <---------ZAT6 --------->WOX13(1)    ---------->DOF2 <----------ID1        <   tagcgaaacagagaagtcgtttaactagtgatcattgccattcaatcaagtctctttagaaaactaaagaaacagcaaaagaaacaaatttgaagttgtc  2681900                                    --------->DOF5.7(2)                                   --------->TOE2(3)                                   <-------GAMYB                                  --------->MYB52(2)                                  <---------MYB46(3)                                 <---------TOE1(2)                                <---------MYB52(1)                              <---------MYB46(3)                              <---------ANAC58                              <---------ANAC58                              --------->MYB52(2)                        ---------->DOF2                             <-------TEIL                         <---------ANAC46                         <---------YAB1                           <---------ANAC58                ---           --------->YAB1<---------TOE2(3)      --------->PCF2    <---------ANAC58                <--  --------->MYB52(2)   --------->YAB1  <---------TOE2(3)       <----------DOF2                   <--- ---------MYB52(1)    <---------YAB1<---------MYB52(1)    <-----------GT1 <---------TOE2(3)      <---   ccgttagttttaagcatgaattctattatggttcgttcgttaatgaagttgtcccactatttactctttcgtagtaaaggaaacaaatttgaactcgggt  2682000            --------->LBD16           <---------HSFB2a(2)          <---------LBD16        <---------SPL7        --------->ARR14(2)        <---------ARR14(2)       <---------DEAR3(2)     --------->ATERF1(1)     <------NtERF2    ------>NtERF2    <---------ZAT2   <---------ARR14(2)   --------->ARR14(2)                                                                 --------->YAB1 ------->GAMYB             --------->ARR14(2)                   --------->MYB46(3)<---------YAB1 ------>MYB52(1)           <---------ARR14(2)            --------->ANAC58     ----------->GT1 -------DOF5.7(2)       <---------TOE2(3)                --------->ANAC58   --------->ZAT14 ------WRKY12     <---------YAB1                     <-----------GT1        <---------ZAT14<---------At4g35610 ------WRKY38(1)--------->YAB1   --------->AtMYB61   --------->YAB1      --------->LBD16   --------->At4g35610   taacggagccggtccggatgataattcaggttccaccaaaaacttttaaaactaataacaagcccatccactatccagagcagtataatcgtaagcttca  2682100                                                   --------->MYB52(1)                          ------                                                 <---------MYB52(2)                            ------                                             --------->LBD16                                  -------                                            --------->ANAC46      <------------CBF         xxxxxxxxxx                                           <---------LBD16       --------->ATHB12 --------->HSFB2a(2)                             --------->TOE2(3)   --------->MYB46(3)     <------ZmHOX2a(2) <---------MYB52(1)                     <-----------GT1     <-----------GT1      <---------PCF5      <---------HSFB2a(2)   ---------->DOF2 --------->AHL20(2) --------->YAB1    <---------MYB52(1)       <-----------------AGL1   aacacaaaagaaatacttcaatttaactcatcgttatcagttataaccggaacaaaccgataggggaccattggatcaaaccgtctcgaaccggtaaccc  2682200                                                                --------->HSFB2a(1)                                                                --------->HSFC1(2)                                                                <---------HSFC1(2)                                                                --------->At4g35610                                XXXXXXXXXXXXXXXXXXXX>MIR779.1   <---------At4g35610                               ------>ZmHOX2a(1)                <---------HSFB2a(1) --->TOE1(3)                  *TSS                              <---------ZAT2                 <----- --->TOE2(3)                  --------->TOE1(2)              <---------MYB52(1)               <------ -->ZAT6                   --------->ARR11(3)             <---------LBD16               <------------ xxxxxxxxxxxxx>smallRNA(fl3) ------>ZmHOX2a(2)          <---------WRKY18(1)          <----------DOF2-   taaaatagtctggttcttgaaatttcggtgatcctgcaacgtttcttctcatcgattttgaccggaagctccttgattcaaacaagacttttcttatcgg  2682300                       ------>ZmHOX2a(2)        --------->ANAC55(1)        --------->ANAC46        --------->ANAC58        --------->ANAC58            ---------->DOF2   <------ZmHOX2a(2)  <---------GLK1(1)  --------->ARR11(3)  <------ZmHOX2a(2)                    --------->ANAC58  <---------ARR11(3)  --------->GLK1(1)            <---------YAB1                           <-------- ----LBD16           --------->ARR11(3)       <---------ANAC58                   <---------REM1(1) ---LBD16            <---------ARR11(3)       --------->TOE2(3)      ---------->DOF2    <----------DOF2 -----AGL1          --------->GLK1(1)         <---------ANAC58---------->DOF2    --------->ALFIN1 ---------->ARR10   <---------GLK1(1) --------->YAB1       --------->ANAC58 ---------->DOF2 <--------   ggaagatcagacggaacagaagagatctctgtgtttacaaaagtaattccttgattatagcaagcaaagaataaagggtaaaggtgtagactttgcttct  2682400                                                                              <------NtERF2                                                                              <---------MYB52(1)                                                                             <-----------HVH21                                                                            --------->RAP2.3(3)                 --------->GLK1(2)                                          --------->RAP2.6(2)                <---------GLK1(2)                                           --------->RAP2.3(2)            --------->ANAC46                                               --------->RAP2.3(1)            --------->ANAC58                          ---------->ID1      --------->At4g35610            --------->ANAC58            --------->HSFC1(2)                <---------At4g35610         --------->ZAT18                --------->HSFB2a(1)               <---------ATERF1(1)    ---------->DOF2                     <---------HSFC1(2)             --------->ZAT2  <---------At4g35610 ------>ZmHOX2a(1)                      <---------HSFB2a(1)            --------->At4g35610 -ANAC58 <---------ZAT18 <-----------HVH21<-----------GT1  <----------TaMYB80<---------RAP2.6(3) -ANAC58 <---------WRKY38(1) <---------At4g35610  <----------DOF2      <---------At4g35610   ctccttcaaagtccacgcgattctcactgtcagcctctgcgaaatttccagtctttctcgcattttccctcgtagcagccgtcaatttcaactgggtatg  2682500                --------->ARR14(2)                <---------ARR14(2)               --------->DOF5.7(2)             <---------ANAC58             <---------ANAC58             <---------ANAC46      ----------------------->TaNAC69(2)     ============================HOX2a_HOX2a     ------>ZmHOX2a(2)    =============================HOX2a_HOX2a    <------ZmHOX2a(2)   --------->ARR11(3)   --------->AGP1  <---------TOE1(3)   <---------ARR11(3)     ------>ZmHOX2a(1)                       <---------HSFB2a(2)   <---------AGP1<---------DOF5.7(2)                              --------->HSFB2a(2)   <---------ARR14(2) <---------ARR14(2)                 <-------GAMYB            ---------->DOF2   --------->ARR14(2) --------->ARR14(2)                 <---------At4g35610   --------->ANAC58  <---------CCA1(2)<---------TOE2(3)                     --------->At4g35610   --------->ANAC58 ----------->ARR10<---------At5g28300               ----------->HVH21        <------ZmHOX2a(1)   tcttagatcttcgtagcgtttacggttcctgctcaattcttcgtttctcgtggtttgacagttgagttacagaaaacgaggacgaaaagcctaattgaag  2682600                         --------->LBD16                        --------->ANAC55(2)                                          --------->At4g35610                        <---------ANAC58                                          <---------At4g35610                        <---------ANAC46                                --------->LBD16                        <---------ANAC55(1)                            --------->ANAC55(2)                        <---------ANAC58                               <---------ANAC55(2)                        <---------ANAC55(2)                           --------------->AtSPL3  -------                  <---------YAB1     <---------ZAT6                   --------------->AtSPL8 <-------     --------->ATHB12   ----------->GT1                    ----------->GT1      --------->YAB1<------   aaattagtgattagaattttgtgattccgtgaaattttagtattagtaagtatagacagaatagaaaaaaatcccgtactattcatcagctatacatatc  2682700  Previous    Next  AGI:  At5g08330.1    Description:  TCP family transcription factor, putative. similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G23280.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70167.1); contains InterPro domain Transcription factor, TCP (InterPro:IPR005333) Range:  from: 2680745    to: 2681814    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g08335.1    Description:  ATSTE14B (PRENYLCYSTEINE ALPHA-CARBOXYL METHYLTRANSFERASE); protein-S-isoprenylcysteine O-methyltransferase. similar to ATSTE14 (PRENYLCYSTEINE ALPHA-CARBOXYL METHYLTRANSFERASE 14A), protein-S-isoprenylcysteine O-methyltransferase [Arabidopsis thaliana] (TAIR:AT5G23320.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62647.1); contains InterPro domain Isoprenylcysteine carboxyl methyltransferase; (InterPro:IPR007269) Range:  from: 2682230    to: 2683713    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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