Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    -                               <------ZmHOX2a(1)                          <----------DOF2           -                             --------->LBD16                              ===========================                            <---------HSFB2a(2)                      ================================                            --------->HSFB2a(2)                      ---------->DOF2               <-     --------->ANAC46       <-----------RAV1(2)                     --------->AtMYB61              --  --------->MYB46(3)    --------->At4g35610                         ------->GAMYB                  -- ------>TOE1(3)        --------->HSFB2a(1)                          ================================= -------MYB59        ---------->DOF2                               --------->MYB46(3)              -- ------>TOE2(3)    --------->ANAC58                        --------->ARR11(3)                      -- ------ANAC55(2)   --------->ANAC58                        <---------ARR11(3)                      <- -ICU4             --------->ANAC46        --------->MYB52(1)   --------->REM1(1)                <---   cctaaacaccgaatgaaaaacccgaaagctccaggagacatgaaacaacgagaattcagaacatctacaaccaaagctttcagtgaggcattttgtcgag  2674900       <------ZmHOX2a(1) ----------->HVH21 -------MYC2 -------PIF4 ------>PIF4 -------MYC3 -------PIF5 ------>MYC2 ------>PIF5 -------MYC4 --------->ANAC46 ------>MYC3 --------->ANAC58 ------>MYC4 --------->ANAC58 ========bZIP_DOF                                                                                  <- ========bZIP_DOF                                                                               ----- --------TGA1a                                          ------>ZmHOX2a(1)                      <----- ------->ANAC58                                      ------>MYB46(1)                        --------- ------->ANAC58                                      ------>MYB83                           --------- ========MYC_MYB                                  --------->HSFB2a(1)                       --------- ------->TGA1a                                    <---------HSFB2a(1)                     <---------ALFIN1 ------->ANAC55(2)                              <-----------GT1                      --------->ANAC58 --------ANAC55(2)                           --------->HSFB2a(2)                     --------->ANAC58 ---------OsbHLH66               <-------TEIL<---------HSFB2a(2)                   ---------->DOF2<--   cacgtgataggatagaagccatggcattgtaagcatacatatcgtttctgtaaccttcctgtttagaagcccaattgaagaacagataagccaaacccca  2675000                                                                            ----------->GT1                                                                            <---------At4g35610                                                                            --------->At4g35610 ---------DOF2                                                            <-----------RAV1(2) ->NtERF2                                                                <---------MYB52(1) ----ALFIN1                                                             <-----------HVH21 >ANAC46                                    <---------LBD16      ---------->CDC5    <---------TOE2(3) >ANAC58                                 <---------At4g35610     <-----------RAV1(2)--------->DAG2 >ANAC58  --------->AtLEC2               --------->At4g35610  --------->At4g35610 ---------->DOF2   - -------DAG2                  --------->TOE2(3)          --------->ZAT6--------->ETT(2)             <   ccttttgaatccattcaagacggtttcgactaccttggtgttgagctctggagagagtatcagtagctcagggtcgtcaggtgaaaaaggttgtctagtg  2675100          <------MYB46(1)          <------MYB83                        --------->ARR14(2)         --------->MYB59         <---------WOX13(1)                                             <----         <---------TOE2(3)     --------->ATHB12                                               <------     --------->ATHB12        <---------WOX13(1)     <---------ZAT6         <---------ZAT14   <-------    <---------YAB1    --------->ZAT2          <---------ARR14(2)           --------->ZAT18   <------- <------ZmHOX2a(2)    <---------ZAT2          --------->GLK1(2)        --------->ATHB12     <------NtERF2 -------->ARR11(3)   --------->ANAC58       <------ZmHOX2a(1)    <---------ANAC46 --------->REM1(2) ---------ARR11(3)   --------->ANAC58  --------->ALFIN1         <-------TEIL <---------ANAC46<-------   aagatcacgattaggttttgggcaagcttggattgattgggatggaggaatctggtgttatctagcttcgtagtgagtggtctgtgaagaagttggcgtt  2675200                                                                                      <-----------RAV1(1) -----MYB46(3)                           --------->HSFB2a(2)                         <---------DEAR3(1) -GAMYB                 ---------->DOF2  <---------HSFB2a(2)                      <---------ANAC58 --ANAC58        --------->ATHB12      <---------HSFB2a(2)                        <---------ANAC58 --ANAC46      --------->GLK1(2)    --------->GLK1(2)      ----------->GT1     <----------DOF2 --ANAC58     <---------GLK1(2)    <---------GLK1(2)      >>>>>>>>>TBF1--------->AtMYB61      <------   gttgttgttgtctagagaatcgttggcaaagaagagcgattctcgagaaggccatgagaagaagaaaattagaccaaaaccctttcgtctgtggttttga  2675300                                                                                       --------->ANAC55(2)                                                          --------->At4g35610          <---------ANAC55(2)                                                          <---------At4g35610          ==============                           <---------At4g35610      =============================================bZIP_DOF                           ----------->RAV1(2)      <----------DOF2                    ==============                   ====================RAV        <---------At4g35610                  --------->O2             <---------ANAC58                     --------->At4g35610                  <---------TGA1a             <---------ANAC58                    <-----------RAV1(1)                   --------->TGA1a   ------>ZmHOX2a(1)       --------->At4g35610 <---------At4g35610      --------->ANAC58  --------->TOE2(3)<-----------RAV1(1)       <---------ANAC58           --------->ANAC58 ---YAB1  <----------DOF2 ------>NtERF2      <---------ANAC58------------>CBF          <---------O2   ttttcctaaaccctttcgtttttgttggcacctgaagaccgtgtttggcttctgctgttctgctccaatttgaaacgcgagttttgcagacgtgattttt  2675400                            --------->ANAC58                            --------->ANAC58                     <---------ANAC58                     <---------ANAC58                   <---------ANAC46                <----------DOF2           <----------DOF2 ------>NtERF2                           --------->SPL7          <---------DAG2  <---------ANAC58                       <---------MYB52(1)      <---------WRKY38(1) <---------ANAC58                      <---------DEAR3(2)      <---------WRKY12    <---------ANAC46                      <---------RAP2.6(3) <-----------GT1<- =====================bZIP_DOF                                 <---------------AtSPL3<-----------GT1 =====================bZIP_DOF ---------->DOF2    <----------DOF2<---------SPL7    <---------AHL20(2)   ctcaagagtcaaccttttcttttgtgtgccgagcaaagtcaacctagagcaactttgttttctagccggtacggttcgattcgattttatcagtttctat  2675500                           ------->TEIL                --------->LBD16                                                                 -----               <---------LBD16                                                                  -----              <---------LBD16                                                                 <------          <---------ANAC58 <---------ARR14(2)       ---------->DOF2                         ------>MYB83          <---------ANAC58 --------->ARR14(2)   <---------AHL20(2)                          ------>MYB46(1)        --------->AtLEC2 ------->GAMYB         --------->AHL20(2)                          --------->ANAC46      <---------ANAC58  <---------MYB52(2) --------->AHL20(2)                              --------->ANAC58      <---------ANAC58 >>>>>>>>>MYB98      <---------AHL20(2)                              --------->ANAC58 <------------CBF     --------->MYB52(1)<----------DOF2                             <---------At4g35610 --------YAB1--------->MYB52(1) --------->YAB1 <---------AHL20(2)--------->MYB52(1) --------->At4g35610   ttcgattgccttgcataccgggagtaacggaccttcataaaacttttaattttataaagaaaacaaaaaacagaacaatatgactcagtagaccagccac  2675600                        --------->ANAC46                        --------->ANAC58 ---->ANAC58            --------->ANAC58                                      <---------ZAT6        - ---->ANAC58    <---------ICU4                     <---------ICU4 <---------ANAC58           <------- ---ALFIN1 --------->LBD16---------->DOF2         <---------ATHB12<---------ANAC58           --------   gcttgcaaaaaccctgaataagtgccacgaaagtaattctatttggatagcaatctttgcccttcatttcgttccaactagagatagcttcactaggtct  2675700                                               <----------DOF2                    <-----------GT1                                             ------>ZmHOX2a(1)          <-----------GT1                                       <---------HSFB2a(1)             <---------ZAT14     <---------ANAC46                  --------->HSFB2a(1)             --------->ZAT14            --- ----->ZmHOX2a(1)                   ---------->DOF2     <----------ID1<----------DOF2        -------- --ARR11(3)             <---------ZAT2 --------->HSFC1(2)          --------->ARR11(3)        -------- ->ARR11(3)             --------->ZAT2 <---------HSFC1(2)          <---------ARR11(3)      --------->CCA1(2)   tcctctagcgcatagccaatgtactaagctagggagtagaaagcttcctctttagaagaagacgaagaagctctttactgtttttaacttgtgatatgca  2675800  Previous    Next  AGI:  At5g08310.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G06540.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71434.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44391.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 2670135    to: 2675255    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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