Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                   --                                                                                            <--------                                                                                            ---------                           <---------MYB52(1)                                               ---------                          <-------GAMYB                                                     ---------                         ----------->GT1                                                  <---------WRKY38(1)    ---------->DOF2   ------------>MYB.PH3(1)  --------->ZAT6                             <---------WRKY12 -----WOX13(1)      ------>MYB46(1)          ----------->RAV1(1)                          <---------- ---MYB46(3)        ------>MYB83            --------->ANAC46                            <-----------HVH21 -->ATHB12        <---------MYB111(1) <---------At4g35610                          --------->GLK1(2)- --YAB1          --------->ANAC46     --------->ZAT2       ----------->GT1  <---------ZAT14 <--------   tgctccaaaagattactccaccaaataccgttactaatcgagcttcccaacactatctagtttgttaaaaccattgagtctagtgattctggtcagctga  2667000       --------->ZAT14     --------->LBD16    <---------ANAC55(2)    <---------ANAC46   <---------LBD16                      --------->ATHB12 ------->CCA1(1)                       <---------YAB1 ------->RVE1(1)                       --------->ICU4 -ZAT2 <---------ZAT14               --------->YAB1                       <---------MYB46(3) >ZAT2----------->HVH21             <---------YAB1                       <---------MYB52(1) >At4g35610                         --------->ICU4                      <---------MYB52(1) -->RAV1(2)                       --------->YAB1                        <-------GAMYB         <------ -RAV1(2)                      <----------DOF2              <---------ANAC58                  ------- -------->ARR11(3)       --------->ARR14(2)     --------->GLK1(2)   xxxxxxxxxxxxxxxxx>smallRNA(le3) -At4g35610              <---------ARR14(2)  <---------YAB1 <---------ANAC58              ------->TEIL   aatatcccgtgaactggtttcatttcatatatgctttgatgatgattgtgattctggtttttgcttactgtttcggttgttctccatttatgtatgtaac  2667100                                                                                   ------->TEIL                                                                                <---------ANAC46                                                                          <---------TOE1(2)                                                                         --------->LBD16                                                     ------->TEIL   ------>ZmHOX2a(2)                                                     <---------ARR14(2)  ------>ZmHOX2a(1)                              >>>>>>>>>CBP60g        --------->ARR14(2) <---------LBD16   <---------ANAC58  <---------ZAT14        <------MYB83          <---------ARR11(3)       <---------bZIP60(1)   <---------ANAC58  --------->ZAT14        <------MYB46(1)       --------->ARR11(3)    ----------->HVH21 -----GT1         ----------->GT1        <---------MYB52(1)------->TEIL----------->RAV1(2) --------->bZIP60(1) >TEIL      <---------YAB1    >>>>>>>>>SARD1<---------ANAC46  <----------DOF2   <---------ANAC55(2)   tacttgcttcgaacatgattcagtgaaatgaaatttggaagccgttgggtttatgtatatgcatctttgatcttcctgggttatgtatatgtgacaccat  2667200                        --------->ANAC58                        --------->ANAC58                      --------->CCA1(2)                     <---------ARR14(2)                     --------->ARR14(2)               <---------ATHB12                               <---------ARR14(2)              ------>MYB46(1)                       --------->ARR11(3)              ------>MYB83                <---------YAB1      --------->ARR14(2)             --------->MYB52(1)         <-----------GT1 <-----------GT1     <---------ICU4            --------->TOE1(2)    ------->TEIL       <---------ARR11(3)   --------->YAB1   --------->At4g35610   ttgtctaccaagtaccaacgatggatacgaaaatgaaactttttactattgaaagattttacagaatacgtttattcataatttttctgaagagctcaat  2667300                       <---------AHL20(2)                       --------->AHL20(2)               <---------AHL20(2)                   --------->ARR11(3)                   <---------AHL20(1)                   <---------ARR11(3)                   --------->AHL20(2)               ---------->DOF2                   <---------WOX13(1)             --------->LBD16                    <------------CBF                     <---------AHL20(2)            --------->HSFB2a(2)       ----------->HVH21 --------->AHL20(1)    --------->HSFC1(1)            <---------HSFB2a(2)     <---------At4g35610--------->AHL20(2)     --------->HSFB2a(2)            <---------HSFC1(1)--------->ICU4   <--------ATHB1                 <---------HSFB2a(2)         --------->GLK1(2)  --------->AHL20(2) --------->ATHB12        --------->WOX13(1)       --------->HSFB2a(1) <---------AHL20(2) --------->ICU4          <-------TEIL  --------->AHL20(2)       <---------HSFB2a(1) --------->AHL20(2) <---------YAB1     ---------->DOF2    <---------AHL20(2)   gtttgagaaagattccagaaagattttaaataatttttagttgacagaatgattgaaataaattctaaaaagtccatcatctagaaataaatgggtttgg  2667400                                              <----------DOF2                                       ==============================RAV                                       <-----------RAV1(1)                        ---------->DOF2============================RAV                     <----------DOF2<----------DOF2      --------->ZAT2                    <---------------AGL15 <---------RAP2.6(2)                            <-----------GT1                   <-----------------AGL3 --------->ETT(1)                       --------->LBD16               --------->ZAT14 <---------HSFB2a(1)       --------->At4g35610     <---------At4g35610              <---------REM1(1)<---------HSFC1(2)        <---------At4g35610<---------At4g35610              --------->ALFIN1 --------->HSFC1(2)        <---------ZAT2     --------->At4g35610             *TSS  ----------------->AGL1 <---------DEAR3(1)                --------->GLK1(1)           --------->DAG2      --------->HSFB2a(1)   ------>ZmHOX2a(2)      <---------GLK1(1)          ---------->DOF2 <---------TOE2(3) <------NtERF2----------->RAV1(2)--------->ZAT2     ----------->GT1--------------->AGL15--------->RAP2.6(3) <---------GLK1(2)   --------->At4g35610   <------------CBF----------------->AGL3---------->ID1<-----------RAV1(2)  <---------ZAT2  <--------   gctaaaattgagaaaagtgtagcctttaaaggaagcctcttttgtcggcttttgatctcagctgattcttcaaaaccgagctccgctgaattttctttgc  2667500                                                      --------->HSFB2a(2)                                                      <---------HSFB2a(2)                                                 <---------ABI4(2)         --------->YAB1        <---                                                --------->ANAC58           <---------ICU4        <---             --------->ANAC46                   --------->ANAC58        --------->WOX13(1)    -------     <---------ANAC58                         ---------->DOF2         <---------ATHB12 ==============     <---------ANAC58     <-------TEIL      ------>ZmHOX2a(2)       --------->WOX13(1) <---------TGA1a  --------->ARR14(2)  <---------TOE2(3)    <------ZmHOX2a(2)    --------->ANAC58       <---------O2  <---------ARR14(2)  <---------TOE1(3)   --------->ARR14(2)    --------->ANAC58       --------->O2 - --DOF2   <---------REM1(2)               <---------ARR14(2)>>>>>>>>>TBF1 <---------ATHB12    -------   tccatttccgtcttcacacagtttagggttcacaacttgattcggatcgaaagcaccgagaagaagaagccaatcaatcatgtctagacaagtggcaagg  2667600                                              <-----------RAV1(2)                                           <------NtERF2                                           <---------At4g35610                                           --------->ATERF1(1)       ------>ZmHOX2a(2)                   --------->At4g35610      <---------GLK1(1)                   <---------ATERF1(1)      <------ZmHOX2a(2)                   ------>NtERF2      --------->GLK1(1)                   <---------DEAR3(2)     --------->ARR11(3)                   <---------ERF1     <---------AGP1                       <---------RAP2.3(1)     <-----------ARR10                    <---------MYB46(3)     <---------ARR11(3)                  <---------ATERF1(2)     --------->ARR14(2)                  --------->ATERF1(2)   --------->ANAC58     <---------ARR14(2)                  <---------RAP2.3(3)   --------->AtLEC2    <---------ARR14(1)                   <---------RAP2.3(2)   --------->ANAC58    <---------CCA1(2)                   --------->ATERF1(1) <---------MYB52(1) ------ANAC58                         --------->ATERF1(2)  <-----------HVH21 ------ANAC58                         <---------ATERF1(2)  <---------RAP2.6(3)     <---------WRKY18(1) -->ANAC58                   <---------MYB52(1)           --------->ANAC46        ----------->HVH21== ============================bZIP_DOF--------->DEAR3(2)   --------->ANAC55(2)     --------->WRKY12 == -------->MYB52(1)---------->DOF2   --------->MYB52(1) <-----------GT1            --------->WRKY38(1) -->ANAC58 <-----------HVH21<-------GAMYB<---------DEAR3(1)<-----------TGA1       --------->WRKY45 --   cttatcggatctctgtcatcaaaagctcgccgttgttctaccggcggctcagaggtttttccgtcatgccagtctctcacttcgttgacccaatctcgct  2667700                                   =========================MYC_MYB                                   <-------GAMYB                              <----------DOF2                          ------>NtERF2                         <---------RAP2.3(1)                         ------>NtERF2                        <---------DEAR3(1)                        <---------RAP2.3(2)                       <---------LBD16                      ------>ZmHOX2a(1)             ------>ZmHOX2a(1)==============================bZIP_DOF           ==================HOX2a_HOX2a           ------>ZmHOX2a(2) ===============================MYC_MYB           ===============HOX2a_HOX2a                       <-----------HVH21          <------ZmHOX2a(2) <---------MYB46(3)           <---------At4g35610      --------->ANAC58          ===================HOX2a_HOX2a                 --------->At4g35610      --------->ANAC46          ================HOX2a_HOX2a--------->WRKY12  <---------ZAT14            --------->ANAC58         <---------GLK1(2)<------NtERF2                --------->ZAT18      ---------->DOF2         --------->ARR14(2)<---------ANAC46       =====================================bZIP_DOF   ---         <---------ARR14(2)<---------DEAR3(1)     --------->O2          <---------LBD16 <----------DOF2       <---------DEAR3(2)<---------RRTF1(1)       =====================================bZIP_DOF -----     <------NtERF2  ----------->RAV1(2)           <---------O2  --------->ANAC58 --------->RAP2.6(3)    <-----------HVH21 <-----------RAV1(1)         <---------TGA1a     <---------ALFIN1 --------->HSFB2a(1) =================HOX2a_HOX2a<-------GAMYB        --------->TGA1a   <-----------HVH21  <---------HSFB2a(1) ================HOX2a_HOX2a<---------DEAR3(2) --------->TOE1(2)--------->ANAC58--------->MYB52(1)<-- ---->ZmHOX2a(1)   ------>ZmHOX2a(1) --------->WRKY38(1) ------>ZmHOX2a(1)--------->LBD16     <------   ccttcgcgtcggatcctcatcctcctgcggcggttttcgttgacaaaaacacacgagtcctctgtcaaggcatcaccggaaagaacggcactttccacac  2667800                    --------->ANAC58                    <------NtERF2                    ----------------->AGL1                    --------->ANAC58               --------->ANAC58               --------->ANAC46           <---------ANAC58           <---------ANAC58----------->GT1   --------->ANAC58------>NtERF2               <-----------GT1   --------->ANAC46----------->RAV1(1) <---------GLK1(2)   --------->ANAC58<-----------------AGL1  <----------DOF2             >>>>>>>>>>>>>>>>>LFY ------>ZAT14  --------->ANAC58      <---------YAB1            <---------ANAC46 ---->ANAC46  --------->RAP2.6(3)    ------>ZmHOX2a(1)         <---------ANAC58             <------MYB46(1) -------ZAT14 --------->SPL7   ----------->ARR10<-----------GT1<---------ANAC58             <------MYB83 ---ALFIN1<---------------AtSPL3 --------->ARR11(3)           --------->MYB59    <---------YAB1   tgaacaagccattgagtacggcaccaaaatggtaaaatcctgattctttttatcttcttcgaattgggtatttctccattgttccgattacatttggttt  2667900  Previous    Next  AGI:  At5g08290.1    Description:  YLS8 (yellow-leaf-specific gene 8); catalytic. similar to catalytic [Arabidopsis thaliana] (TAIR:AT3G24730.1); similar to unknown [Populus trichocarpa] (GB:ABK94150.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain mRNA splicing factor, thioredoxin-like U5 snRNP; (InterPro:IPR004123) Range:  from: 2665977    to: 2667156    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g08300.1    Description:  succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative. Identical to Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial precursor [Arabidopsis Thaliana] (GB:P68209;GB:O82661;GB:P53586); similar to succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative [Arabidopsis thaliana] (TAIR:AT5G23250.1); similar to unknown [Populus trichocarpa] (GB:ABK95068.1); contains InterPro domain ATP-citrate lyase/succinyl-CoA ligase, active site; (InterPro:IPR017440); contains Range:  from: 2667413    to: 2669924    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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