Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <---------ANAC58                          <---------LBD16  <---------O2                      <---------WRKY18(1)  =======================bZIP_DOF                     --------->WRKY38(1)   --------->TGA1a                     ----------->HVH21     --------->O2                   --------->CCA1(2)                     --------->WRKY45      <---------ANAC58               <---------At4g35610                     --------->WRKY12      <---------TGA1a     <---------ANAC58         <---------ARR11(3)       --------->MYB52(1)<---------LBD16   <---------ANAC46    <---------ANAC58   --------->ANAC58 ------->HVH21    --------->ALFIN1       <---------ANAC46     <---------ZAT2----------->TGA1 ---ANAC46    <-----------RAV1(2)     --------->WRKY12      <---------ZAT18 ----------->HVH21 --At4g35610 <---------ZAT2--------->LBD16 <---------ANAC55(2)<---------At4g35610 --------->ANAC58 ->At4g35610 <---------At4g35610      ----------->HVH21<----------DOF2    --------->At4g35610      <-   agaccgagccaagggagcaggtgttgacccgggaagaaggttgacgcgtgagaacgactttgtgagcttgtgagagagatgacgaagcaatatccatgga  2665600                        ----------->ARR10                    <---------TGA1a                  <---------ZAT14             =================bZIP_DOF             ---------->DOF2                                  --------->AHL20(1)        --------->ATERF1(1)           <---------MYB52(1)      --------->AHL20(2)        <------ZmHOX2a(1)  --------->CCA1(2)    <---------REM1(1)           <------ZmHOX2a(2)   --------->ALFIN1 <---------ANAC46--------->ATHB12          <---------AHL20(2)  <---------GLK1(2) ----------RAV1(2)--------->ZAT14<---------GLK1(1)     ----------->GT1    <---------GLK1(1)   ttcaggtggaggagccaaagtgaagtgagatttggaaatcgttgggagagatgtagagggaaaataaaatgaagagagatcagagaatttcgcttcaaat  2665700                  <---------At4g35610              <---------YAB1                  --------->At4g35610            <------ZmHOX2a(1)              --------->TOE2(3)       <---------ARR11(3)            --------->GLK1(2)         --------->ARR11(3)            --------->ARR11(3)        --------->ARR14(2)            <-----------ARR10         <---------ARR14(2)  <---------ARR11(3)            <---------ARR11(3)       <------ZmHOX2a(1)    --------->ARR11(3)------>ZmHOX2a(1)       ----------->GT1 <---------ALFIN1         ----------->GT1     <----------DOF2          *TSS<---   ggagttgatgggaaaatcttagctctcacctctatgagaggatattggataggataattagattttagagctttattcctctacgaatgactcataccag  2665800                                                                   ---------->DOF2                                                                  <------NtERF2                                                                 --------->LBD16                                                                 <------NtERF2                                                                --------->RAP2.6(2)                          <---------MYB52(1)                   <---------LBD16                        --------->DEAR3(1)               <------------CBF              <---------ANAC58                      <---------At5g28300               --------->ATHB12        <---------YAB1                     <-----------GT1                   <---------AHL20(2)    <---------YAB1                    --------->MYB46(3)               <----------DOF2 ----------->GT1   <---------ANAC58               --------->TOE2(3)                    ================================================= ------GLK1(2) --------->TOE1(3)  ------------>CBF  <-----------------AGL3--------->ICU4   attatggtgttctactaccttaatcaccgtctgtttcgcaatctcgtcgatttatcttttattgggccggaaagtaagtattatcaagggcttagcccaa  2665900                                       <-----------HVH21                                      --------->DEAR3(1)                                  <------NtERF2                                  --------->ATERF1(1)                                  ----------->HVH21                                 <-----------HVH21                                 ------>NtERF2                                 <-----------TGA1                                 <---------ATERF1(1)                                --------->RRTF1(2)                                --------->bZIP60(1)                                --------->O2                                --------->RRTF1(3)                                --------->bZIP60(2)                                --------->RAP2.3(3)                                <---------ATERF1(2)                                --------->DEAR3(1)                                --------->ATERF1(2)                               <------NtERF2                               --------->RRTF1(1)                               --------->RAP2.3(1)                               --------->ERF1                 <-------MYC3 ------>NtERF2                 --------->LBD16--------->RAP2.3(2)              --------->ANAC46<---------ATERF1(1)           <-------TEIL     ------>NtERF2          <-----------HVH21 <---------ABI4(2)                                   ----------->GT1      <---------LBD16  --------->DEAR3(2)  <-----------------AG  <---------AHL20(2) <----------DOF2 ------->MYC3--------->ANAC46   <------------CBF --------->AHL20(2)     ----------->GT1 <---------DAG2 <---------ANAC46<---------bZIP60(1)             --------->AHL20(2)     --------->DAG2 ============================================================MADS_MADS       *TSS      <---------TOE2(3)   acgctttatgcggttcacgcgtggaatcgacgcgccgtcaccgtcaacaaaattgggaagagaatataaaattagggcaagagagaaaaaaggttgaatc  2666000                                                                          <------MYB46(1)                                                                          <------MYB83                                                               --------->ZAT18                                                               --------->ZAT14                                                           --------->ARR14(2)                                                        <---------ALFIN1<--------P                                               <---------ARR14(2)       --------->ALFIN1                                               <---------ARR11(1)       <---------MYB52(1)                                               --------->ARR14(2)      <-------GAMYB                                               <---------TOE1(2)       <---------MYB52(1)                 --------->ETT(2)              ------->TEIL<---------ARR14(2)       ----------->GT1                         <-----------ARR10    <---------LBD16      ----------->GT1                         <---------CCA1(2)<---------ZAT14      ------>ZmHOX2a(2)                       <---------ARR14(1)<---------ALFIN1           <---------GLK1(2)     <------ZmHOX2a(2)                      <---------ANAC58   <---------ZAT18<---------MYB46(3)    <---------ARR14(2)                      <---------ANAC58<---------At4g35610<---------At4g35610  <    --------->ARR14(2)                      <---------ANAC46--------->At4g35610<-------GAMYB---------   gaaacagatcggaaaatcgtcgagagagagagagagagagagaatgtcgtatcttcttccacatctgcactccggttgggctgttgatcagtcgattctg  2666100                  <-----------TGA1    <---------ANAC46                                          <----                  <-----------HVH21 --------->ATHB12                                     <----------DOF2         <---------ANAC58          ----------->HVH21                                   <---------YAB1   <------ZmHOX2a(1)         <---------RAP2.6(2)                <-----------HVH21    <---------CCA1(2) ------NtERF2   ---------->ID1 ------>NtERF2                --------->ARR14(2)  ===================== >GLK1(2)<---------ANAC58   --------->RAP2.6(3)             <---------ARR14(2)  ------>ZmHOX2a(1)   -   gccgaggaagagcgtctcgtcgtcattcgtttcggccatgactgggatgagacctgtatgcaggtctgtcaaacgtttcttcctctcttatctttatatt  2666200                                                                      <---------HSFB2a(2)                                                                      --------->HSFB2a(2)                                                                  <---------SPL7                                                                 <---------ANAC58                                                                 <---------ANAC58                                                              ------>ZmHOX2a(1)  ------>ZmHOX2a(2)                                         ------>ZmHOX2a(2)                   <---- -------GT1   --------->AHL20(2)                           <------ZmHOX2a(2)                  <------ ========HOX2a_HOX2a                                      <---------ARR14(2)                 <------- -------->ARR11(3)      <---------YAB1                    --------->ARR14(2)          <----------DOF2   tcgatcttgagcttgattatatgtttttgattcgatttgtagttcatagctctcgatttggatcctttcgtactggaaaattgcgatactttgtggtgat  2666300                                                                           <-------GAMYB                                                                          <------MYB46(1)                                                                          <---------MYB46(3)                            --------->ICU4                                <------MYB83                   <---------At4g35610                                    ----------->GT1                   --------->At4g35610                 --------->RVE1(1)<--------P                ------>ZmHOX2a(1)                    --------->AHL20(2)------------>MYB.PH3(2) -----WOX13(1) <---------ANAC58                --------->ANAC46 <-----------RAV1(1) ---MYB46(3)   --------->TOE2(3)       <---------TOE2(3)        <---------MYB46(3) --YAB1        <---------ANAC58        <---------TOE1(3)    ------>ZmHOX2a(1)                 <------   tgtttgaaaattgtgttccttagctcagaactgatgaaattagggtttcactcaaaaaaatcctagttgttggagttggttactatgtagaaggttttga  2666400                                                                                   <---------ANAC46                                                                             --------->ARR14(2)                                                                             <---------ARR14(2)                                                                           --------->LBD16                                                                          <---------ANAC46                                                                     <---------HSFC1(2)                                                                     --------->HSFC1(2)                                                                     --------->HSFB2a(1)                                                                     <----------TaMYB80                                                                     <---------HSFB2a(1)                                                                     <---------KAN4(1)     <---------WOX13(1)                                                            <---------ARR11(3)--------->GLK1(1)                                                            --------->ARR11(3)<---------GLK1(1)                                                        <------MYB46(1)   <---------HSFB2a(2)                                                    --------->ARR14(2)   <---------LBD16  <---------ANAC58                                                    <---------ARR14(2)--------->KAN4(2)   <---------ANAC58                                                    --------->GLK1(2)--------->KAN4(1)   --------->ATHB12                                             <---------ANAC58       ---------->TaMYB80  <---------YAB1       <----------DOF2                <---------MYB52(1)<------MYB83<---------KAN4(2)<---------ANAC46 ---YAB1    <---------ZAT6     <---------YAB1<---------ANAC58 ------>ZmHOX2a(2) <-----------RAV1(1)   atgtgtccgttttagtgtccatttctgtgatttatgcttcgttttgttcttgcgaatttggtgatcttggaatattccggatatgttgtgttgattgttt  2666500  Previous    Next  AGI:  At5g08280.1    Description:  HEMC (HYDROXYMETHYLBILANE SYNTHASE); hydroxymethylbilane synthase. Identical to Porphobilinogen deaminase, chloroplast precursor (HEMC) [Arabidopsis Thaliana] (GB:Q43316); similar to Porphobilinogen deaminase, chloroplast precursor (PBG) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) (GB:Q43082); contains InterPro domain Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; (InterPro:IPR000860) Range:  from: 2663500    to: 2665793    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g08290.1    Description:  YLS8 (yellow-leaf-specific gene 8); catalytic. similar to catalytic [Arabidopsis thaliana] (TAIR:AT3G24730.1); similar to unknown [Populus trichocarpa] (GB:ABK94150.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain mRNA splicing factor, thioredoxin-like U5 snRNP; (InterPro:IPR004123) Range:  from: 2665977    to: 2667156    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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