Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     ------>MYB46(1)                                              <-----------GT1                                          <---------RVE1(1)                                         <---------ARR11(3)                     --------->ARR14(2) ----->ANAC58                            <---------GLK1(2)                      <---------ARR14(2) ----->ANAC46           ---------->DOF2  --------->ARR11(3)            <---------YAB1 ----->ANAC58       ----------->HVH21   <---------RVE1(1)            <---------At4g35610 ---->DOF2   ---------->DOF2    ---------->DOF2    ------>MYB83     <---------YAB1                 --   agcccctatagactcaaaagagttgacaaagaataaaaggagagatttttaccttccccttgtgccaattctgatgatagcagttcgggttttctgttca  2665400                                            <------NtERF2                                           ------>NtERF2                                           ----------->RAV1(1)                                          ----------->HVH21                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                          --------->DEAR3(1)                                          <---------ETT(2)                           <---------ARR14(2)                   ------->TEIL          --------->RAP2.3(1)                         --------->ARR14(2)                --------->ANAC58        --------->LBD16                    --------->LBD16                --------->ANAC46        ------>NtERF2                    --------->At4g35610     ----           <----------DOF2             <---------LBD16                   <---------LBD16      <------        --------->ANAC58       <----------DOF2                   <---------At4g35610 --------->GLK1(2)        --------->ANAC58    --------->ARR11(3)      --------->TOE2(3)--------->GLK1(2)       <-------  ----------->RAV1(1)       <---------ARR11(3)      <---------MYB59  <---------ARR14(2)      -------- ----->GAMYB    --------->ANAC58      <---------LBD16 ---------->DOF2--------->ARR14(2)   <---------MYB52(1)   acagcaacacaagctttcacgaacccagaagagctttgtttccggcgacatttacctaaagctggagagctaatctgcggaagagagaatccgatagcgg  2665500                                           <---------TGA1a                          <---------LBD16  <---------ANAC58                      <---------WRKY18(1)  <---------ANAC58                     --------->WRKY45      <---------ANAC46                     --------->WRKY12      <---------O2                   --------->At4g35610                     ----------->HVH21     --------->TGA1a     <---------ANAC58         <---------ARR11(3)                     --------->WRKY38(1)   <---------ANAC55(2) <---------ANAC58   --------->ANAC58       --------->MYB52(1)<---------LBD16   =======================bZIP_DOF--------->CCA1(2) ------->HVH21    --------->ALFIN1       <---------ANAC46     <---------ZAT2----------->TGA1 ---ANAC46    <-----------RAV1(2)     --------->WRKY12        <---------At4g35610 --------->ANAC58 --At4g35610 <---------At4g35610      ----------->HVH21     <---------ZAT18 ----------->HVH21 ->At4g35610 <---------ZAT2--------->LBD16 --------->O2<----------DOF2    <---------At4g35610      <-   agaccgagccaagggagcaggtgttgacccgggaagaaggttgacgcgtgagaacgactttgtgagcttgtgagagagatgacgaagcaatatccatgga  2665600                        ----------->ARR10                    <---------ANAC46                  --------->ZAT14             =================bZIP_DOF             ---------->DOF2                                  --------->AHL20(1)        --------->ATERF1(1)           <---------MYB52(1)      --------->AHL20(2)        <------ZmHOX2a(1)  --------->CCA1(2)    <---------REM1(1)           <------ZmHOX2a(2)   --------->ALFIN1 <---------TGA1a --------->ATHB12          <---------AHL20(2)  <---------GLK1(2) ----------RAV1(2)<---------ZAT14<---------GLK1(1)     ----------->GT1    <---------GLK1(1)   ttcaggtggaggagccaaagtgaagtgagatttggaaatcgttgggagagatgtagagggaaaataaaatgaagagagatcagagaatttcgcttcaaat  2665700                  <---------At4g35610              <---------YAB1                  --------->At4g35610            <------ZmHOX2a(1)              --------->TOE2(3)       --------->ARR11(3)            --------->ARR11(3)        <---------ARR14(2)            <-----------ARR10         <---------ARR11(3)            --------->GLK1(2)         --------->ARR14(2)  --------->ARR11(3)            <---------ARR11(3)       <------ZmHOX2a(1)    <---------ARR11(3)------>ZmHOX2a(1)       ----------->GT1 <---------ALFIN1         ----------->GT1     <----------DOF2          *TSS<---   ggagttgatgggaaaatcttagctctcacctctatgagaggatattggataggataattagattttagagctttattcctctacgaatgactcataccag  2665800                                                                   ---------->DOF2                                                                  <------NtERF2                                                                 <------NtERF2                                                                 --------->LBD16                                                                --------->RAP2.6(2)                          <---------MYB52(1)                   <---------LBD16                        --------->DEAR3(1)               <------------CBF              <---------ANAC58                      <---------At5g28300               --------->ATHB12        <---------YAB1                     <-----------GT1                   <---------AHL20(2)    <---------YAB1                    --------->MYB46(3)               <----------DOF2 ----------->GT1   <---------ANAC58               --------->TOE1(3)                    <-----------------AGL3--------->ICU4 ------GLK1(2) --------->TOE2(3)  ------------>CBF  =================================================   attatggtgttctactaccttaatcaccgtctgtttcgcaatctcgtcgatttatcttttattgggccggaaagtaagtattatcaagggcttagcccaa  2665900                                       <-----------HVH21                                      --------->DEAR3(1)                                  <------NtERF2                                  --------->ATERF1(1)                                  ----------->HVH21                                 <-----------HVH21                                 <---------ATERF1(1)                                 ------>NtERF2                                 <-----------TGA1                                <---------ATERF1(2)                                --------->RRTF1(3)                                --------->RRTF1(2)                                --------->RAP2.3(3)                                --------->RAP2.3(2)                                --------->ATERF1(2)                                --------->DEAR3(1)                                --------->bZIP60(2)                                <---------bZIP60(1)                               --------->RRTF1(1)                               --------->ERF1                               --------->RAP2.3(1)                               <------NtERF2                 --------->LBD16--------->bZIP60(1)                 <-------MYC3 ------>NtERF2              --------->ANAC46<---------ATERF1(1)           <-------TEIL     <---------ABI4(2)          <-----------HVH21 ------>NtERF2                                       ----------->GT1      <---------LBD16  --------->DEAR3(2)  <-----------------AG  <---------AHL20(2) <----------DOF2 ------->MYC3--------->ANAC46                    --------->AHL20(2)     ----------->GT1 <---------DAG2 <---------ANAC46--------->O2    <------------CBF--------->AHL20(2)     --------->DAG2 ============================================================MADS_MADS       *TSS      <---------TOE2(3)   acgctttatgcggttcacgcgtggaatcgacgcgccgtcaccgtcaacaaaattgggaagagaatataaaattagggcaagagagaaaaaaggttgaatc  2666000                                                                          <------MYB83                                                                          <------MYB46(1)                                                               <---------ZAT18                                                               --------->ZAT18                                                           <---------ARR14(2)                                                        <---------ALFIN1<---------MYB52(1)                                               <---------ARR11(1)       <--------P                                               --------->ARR14(2)       --------->ALFIN1                                               <---------ARR14(2)      <-------GAMYB                                               <---------TOE1(2)       <---------MYB52(1)                 --------->ETT(2)              <-----------ARR10    <---------LBD16       ----------->GT1                         ------->TEIL--------->ARR14(2)      ----------->GT1                         <---------CCA1(2)--------->ZAT14      ------>ZmHOX2a(2)                       <---------ARR14(1)<---------ALFIN1           <---------GLK1(2)     <------ZmHOX2a(2)                      <---------ANAC46   <---------ZAT14<---------MYB46(3)    --------->ARR14(2)                      <---------ANAC58<---------At4g35610<---------At4g35610  <    <---------ARR14(2)                      <---------ANAC58--------->At4g35610<-------GAMYB---------   gaaacagatcggaaaatcgtcgagagagagagagagagagagaatgtcgtatcttcttccacatctgcactccggttgggctgttgatcagtcgattctg  2666100                  <-----------HVH21   <---------ANAC46                                          <----                  <-----------TGA1  --------->ATHB12                                     <----------DOF2         <---------ANAC58          ----------->HVH21                                   <---------YAB1   <------ZmHOX2a(1)         <---------RAP2.6(2)                <-----------HVH21    <---------CCA1(2) ------NtERF2   ---------->ID1 ------>NtERF2                <---------ARR14(2)  ------>ZmHOX2a(1)   - >GLK1(2)<---------ANAC58   --------->RAP2.6(3)             --------->ARR14(2)  =====================   gccgaggaagagcgtctcgtcgtcattcgtttcggccatgactgggatgagacctgtatgcaggtctgtcaaacgtttcttcctctcttatctttatatt  2666200                                                                      <---------HSFB2a(2)                                                                      --------->HSFB2a(2)                                                                  <---------SPL7                                                                 <---------ANAC58                                                                 <---------ANAC58                                                              ------>ZmHOX2a(1)  ------>ZmHOX2a(2)                                         ------>ZmHOX2a(2)                   <---- -------GT1   --------->AHL20(2)                           <------ZmHOX2a(2)                  <------ -------->ARR11(3)                                        <---------ARR14(2)                 <------- ========HOX2a_HOX2a    <---------YAB1                    --------->ARR14(2)          <----------DOF2   tcgatcttgagcttgattatatgtttttgattcgatttgtagttcatagctctcgatttggatcctttcgtactggaaaattgcgatactttgtggtgat  2666300  Previous    Next  AGI:  At5g08280.1    Description:  HEMC (HYDROXYMETHYLBILANE SYNTHASE); hydroxymethylbilane synthase. Identical to Porphobilinogen deaminase, chloroplast precursor (HEMC) [Arabidopsis Thaliana] (GB:Q43316); similar to Porphobilinogen deaminase, chloroplast precursor (PBG) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) (GB:Q43082); contains InterPro domain Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; (InterPro:IPR000860) Range:  from: 2663500    to: 2665793    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g08290.1    Description:  YLS8 (yellow-leaf-specific gene 8); catalytic. similar to catalytic [Arabidopsis thaliana] (TAIR:AT3G24730.1); similar to unknown [Populus trichocarpa] (GB:ABK94150.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain mRNA splicing factor, thioredoxin-like U5 snRNP; (InterPro:IPR004123) Range:  from: 2665977    to: 2667156    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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