Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <---------AHL20(2)                                                                          --------->AHL20(1)       --                                                                          <---------AHL20(1)       --                                            <---------ALFIN1              --------->AHL20(2)     <---                                    --------->ALFIN1                      <---------AHL20(2)   <-----                              <------ZmHOX2a(1)                       <---------AHL20(2)      <------                   --------->MYB52(1)    <---------PCF5               --------->AHL20(2)   --------->ICU4 ----DOF2    --------->AHL20(2)    <------ZmHOX2a(1)         <---------ATHB12         ----------->GT1   tcccaaaccatggaattaaaccaagggctagaggagaggagttggaccactcttggatgtctaatcaactgtttaatttattagttaagagtaattttgg  2637600                                          ------>NtERF2                                         --------->LBD16                                         <---------ZAT18                                        <---------ANAC58                               ------>NtERF2                               <---------RAP2.6(3)                               ----------->RAV1(1)                               <---------DDF1                              --------->At1g77200                              --------->DEAR4(1)                              <---------ETT(1)                              ----------->HVH21   ---------->DOF2            --------->DEAR3(1) ------->MYB46(2)             --------->RAP2.3(3)               --------->ANAC58 ------->MYB59                --------->DREB2C(2)               <---------ALFIN1 ------MYB52(1)              --------->RAP2.3(1)   <----------DOF2<---------ALFIN1             <----- ----MYB46(3)        --------->ZAT6     <---------ANAC58        --------->ANAC58              <------ ---TOE2(3)        <-----------GT1     <---------LBD16<-----------HVH21           <----------DOF2  <-   ttaggcaaagaagaatggatttaactctctcgccgacattttgcggacttcttctttgtcaaacacacacacttcgttttctgcctttcaaagtttttta  2637700                            <---------YAB1                           --------->AHL20(2)                       <---------AHL20(1)                       --------->AHL20(2)                       <---------AHL20(2)          --------->ANAC58                       <---------ICU4              --------->ANAC46                       <--------ATHB1              --------->ANAC58            <---------ANAC55(2)                    <---------ANAC55(2)           <---------ICU4 <---------ICU4   <---------ICU4          --------->ICU4 --------->ICU4    --------->ATHB51               <-----------GT1        --------->YAB1 --------->YAB1      --------->AHL20(2)          <---------ARR11(3)     ----------->GT1  <---------ATHB12     <---------AHL20(2)--------->GLK1(2) ----AHL20(2)         <---------ATHB51    <---------YAB1    <---------GLK1(2)         ----------->GT1 ---AHL20(2)--------->ANAC55(2)           --------->ICU4 --------->YAB1--------->AHL20(1) --------AHL20(2)     --------->ICU4----------->GT1--------->ANAC55(2) <---------AHL20(1)        ----   ttttatccagtaataagtaatctaataatttttataagtagataattatttctacgtaatcagaatctcacaatattttcgacttcatttgtaaaaatgt  2637800                             -------->HAHB4                             <---------ICU4                             <---------AHL20(2)                            --------->ICU4                            <---------YAB1                          <---------ICU4                          --------->YAB1                               ------>ZmHOX2a(2)                         <---------YAB1                               <------ZmHOX2a(2)                         --------->ICU4            <---------ANAC55(2)--------->CCA1(2)                        <---------AHL20(2)       --------->AHL20(2)  --------->ARR11(3)                        <---------AHL20(1)    <---------ICU4         --------->ARR14(2)                        --------->AHL20(2)   <---------AHL20(2)      <---------ARR14(2)                       --------->YAB1        --------->AHL20(1)      <---------ARR11(3)                <---------AHL20(2)   --------->HSFC1(1)              --------->AGP1                --------->AHL20(2)   <---------HSFB2a(2)             <---------AGP1               <--             <---------AHL20(2)      --------->HSFB2a(2)            --------->RVE1(1)             ---      <----------DOF2 <---------YAB1 <---------HSFC1(1)    <----------DOF2                        <--  <---------ZAT18    --------->AHL20(2)     --------->AHL20(2)--------->YAB1  <-----------GT1     --- --->TEIL    --------->AHL20(2)<---------YAB1--------->AHL20(2)  ---------->DOF2               ------   atcgagcacttttatttttttaatattataattattcttctagaaaaaaaattacttaaaacttttataaagatctgatttcacccatttctgtcatcaa  2637900                                                                   --------->AHL20(1)                                                                   <---------AHL20(1)                                                                   --------->AHL20(2)       --------->AHL20(2)                                       --------->YAB1       <---------AHL20(1)                                       <--------HAHB4       --------->AHL20(1)                                       <---------ICU4       <---------AHL20(2)                                       --------->ATHB51      <---------AHL20(2)                                        <--------ATHB1      --------->AHL20(2)                                       <---------ATHB12   <---------AHL20(2)                                          <---------ATHB51  --------->AHL20(2)            --------->AHL20(2)         ------------>CBF  <---------AHL20(2)            <---------AHL20(2)      <---------ICU4   <---------YAB1 -------AHL20(1)        --------->ZAT2                  -------->HAHB4  ------------>CBF ------>AHL20(1)        <---------At4g35610            <---------ATHB51<-----------GT1 -------AHL20(2)        <---------ZAT2  ---------->DOF2--------->ICU4  --------->YAB1       <-------- ------>AHL20(2)        --------->At4g35610       --------->TOE2(3)<---------AHL20(2)      <---------ANAC58 --->WOX13(1) <-----------GT1  --------->AHL20(2)<---------ZAT6--------->ICU4              <---------ANAC58   ttaattaaataaatttttgctgtttcagctcgatttaatttgcaaagcttagtcttaataatgcaataattaattacaatacgaattagttttgctttgt  2638000                                                                 ==================HOX2a_HOX2a                                                                 ===================HOX2a_HOX2a -----                              ----------->GT1                    <------ZmHOX2a(1)    <---------ANAC58                             <---------TOE2(3)           <---------TGA1a              <---------ANAC46                          <---------ATHB51               <---------O2        ------>ZmHOX2a(2) ------                          --------->ICU4                 --------->O2       <------ZmHOX2a(2)  ------                        <---------ICU4                   --------->TGA1a    <---------GLK1(1)  ------                       --------->ICU4                 ----------->HVH21     --------->GLK1(1)  <-----                     --------->YAB1                  ------>NtERF2         --------->ARR11(3) <------                    --------->AHL20(2)            <---------At4g35610      <---------ARR11(3) <------                --------->AHL20(2)                --------->At4g35610     --------->GLK1(1)   -------  <----------DOF2<---------AHL20(2)  *TSS        --------->DEAR3(1)       <---------GLK1(1)  <------- --DOF2    <-----------TGA1  <---------YAB1     --------->MYB46(3)   <---------ZAT14  <---------ANAC58   ttctctttttaagcgtcattaaataaaaattatggtataactccaattccaccgctgcgacgagagaggagcacagagatctctcgtttcgtttttcccg  2638100        <------ZmHOX2a(1)      <---------TOE2(3) --------->ARR11(3) <---------ARR11(3) <---------ARR14(2) --------->GLK1(2) --------->ARR14(2) <-----------ARR10      ---------->DOF2 ---->LBD16         --------->ANAC58 --->ANAC46         --------->ANAC58 --->LBD16   --------->AHL20(2) --->HSFB2a(2)<---------AHL20(2)         ------>ZmHOX2a(1) ----HSFB2a(2)--------->AHL20(2)         --------->At4g35610 ---LBD16    <---------AHL20(1)       <------ZmHOX2a(2)                     ----------------------->TaNAC69(2) ---HSFB2a(2)<---------AHL20(2)      <---------ARR14(2)            <---------WRKY38(1) -->HSFB2a(2)--------->AHL20(1)      --------->ARR14(2)            --------->ZAT18               <--- --LBD16=====================================HOX2a_HOX2a           <---------ZAT18     <-----------GT1   gaaaatctgaggaaataaaattaagcaaaagtttccatcgatcctctgagaaaaaattcgactctctagtccacgagttttttttttgttcacctctctc  2638200                                 <---------ICU4    <----------DOF2    <---------MYB52(1)          <---------YAB1  <-----------GT1                                    <-   --------->TOE2(3)  --------->ANAC46 <---------ANAC58                                       xxxxxxx ---------->ID1       --------->ANAC58 <---------ANAC58                       ------->TEIL  ------>ZmHOX2a(1) -------DOF2          --------->ANAC58 <---------ANAC46       <---------MYB52(1)           ----------   tttttcgttaatctctctcaaacaacgcctcttcatcatttccttgtaattcactttcttctccgttttttttttttttgaatctctcttcgtccttcgc  2638300                                                   <---------ZAT14                                                  <---------ZAT6                                              =========================HOX2a_HOX2a                                              ------>ZmHOX2a(2)                                             ==========================HOX2a_HOX2a                                             <------ZmHOX2a(2)                                            --------->AGP1                                            <---------AGP1                                            <---------ARR14(2)                                            --------->ARR11(3)                 ===================================HOX2a_HOX2a        <---------ANAC58  --------->ICU4    <---------ARR11(3)        <---------ANAC58  <---------YAB1    --------->ARR14(2)  =====================================HOX2a_HOX2a --------MYB52(1)====================================HOX2a_HOX2a<------ZmHOX2a(1)             ------>ZmHOX2a(2) xxxxxxxxxxxxx>smallRNA(le3)               <---------CCA1(2)  --------->MYB59      <---------YAB1 ----------->WRI1------>ZmHOX2a(1)   <---------YAB1--------->ZAT14              --------->GLK1(2)   cgtttcgatttcttgtttcctctacttgatgatgaaattttgatcagatctagtgtagaatagttaggatttacccagagagattatgtttatggatcga  2638400                                                            <---------ICU4                                                           <---------YAB1                        ----        <---------ARR14(2)   ------>ZmHOX2a(1)           --------->YAB1                         <----        --------->ARR14(2)   --------->LBD16   <---------ARR14(2)                               <----       --------->GLK1(1)     --------------->AGL15      <---------YAB1                ----------->GT1       <---------GLK1(1)     <---------------AGL15  --------->LBD16               --------->ATHB12 --------->CCA1(2)         ----------->RAV1(2)<----------TaMYB80       <---------GLK1(2)        <----   gagagacggagttctggtcgtaatgggactcctgaatatagcaatggcaaattccgagatgataatggttttggattcttagatcgattggaaaattgcc  2638500  Previous    Next  AGI:  At5g08200.1    Description:  peptidoglycan-binding LysM domain-containing protein. similar to peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42017.1); contains InterPro domain Peptidoglycan-binding LysM; (InterPro:IPR002482) Range:  from: 2638037    to: 2640825    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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