Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <-----------GT1                                         <xxxxxxxxxxxxxxxxsmallRNA(le3)                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                        <xxxxxxxxxxxxxxxxsmallRNA(i)<-----------GT1                                        <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                        <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                      <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                      <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                      <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                              <                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                              <                                     <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                             <x                                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           <x                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            <x                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            <x                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <x                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                          <---                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxx                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <------ZmHOX2a(1)                   <-------TEIL     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             --------->ZAT18<x -------TEIL ---------->DOF2        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <---------AHL20(2)  <xxxx ------->CCA1(2)  --------->CCA1(2) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------YAB1 =========== --->DOF2 --------->YAB1   <XXXXXXXXXXXXXXXXXXXXMIR773           <----------DOF2    <---------ZAT14<x   gattcaagtcaataagaaagatacaagaggcaaacgctggatgcagaggtttatcgatctattcatgcttttacatttttaatgtgttcacaggaagaga  2635000             ------>NtERF2          ------>NtERF2          <---------ATERF1(1)       <---------At4g35610       --------->At4g35610     --------->MYB46(3)    <xxxxxxxxxxxxxxxxsmallRNA(s)    ------->TEIL  <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) XXXXXXXXXXXXXXXXXXXX>MIR162A/B xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                --------->AHL20(2) xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               --------->TOE2(3)       --------->ANAC46 xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              --------->YAB1           --------->ANAC58 ---ZmHOX2a(2)                                             ------->GAMYB           <------ZmHOX2a(2) xxxxxxxxxxxxxxxxxsmallRNA(fl3)                           --------->ANAC58   --------->GLK1(2)      < xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        --------->ANAC58   --------->ARR14(2)  <xxx xxxxxxxxxxxxxxxxsmallRNA(le3)                         <---------WRKY12  ----------------->AGL1 <---- ===HOX2a_HOX2a                                      <-----------HVH21 <-----------GT1  --------->ANAC58 xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <---------MYB52(2) --------->ANAC46   <---------ARR14(2)------   tcgatgaaccgctgcctccagcgactctcactcttcttccaactaaactccaaaatgtcaacgaaacataaattttccgaatcggatcaaacgaaacaca  2635100   ------>ZmHOX2a(2)                                          <---------DAG2  <------ZmHOX2a(2)                                     <---------ICU4  --------->CCA1(2)                                <---------AGP1 <---------ARR14(2)                                --------->ARR11(3) --------->AGP1                                    <---------ARR11(3) --------->ARR14(2)            --------------->AGL15    --------->ATHB12 <---------AGP1        --------->ARR11(3)          <---------ARR14(2) <---------ARR11(3)    <---------ARR11(3)          --------->ARR14(2) --------->ARR11(3)    --------->GLK1(2)          <---------CCA1(2)          <----------ID1 ---------CCA1(2)  --------->YAB1             --------->At4g35610 <---------YAB1 xxxxxxxxxxxxxxxxxsmallRNA(se3)<---------------AGL15   <---------YAB1     ------>MYB83   <---------ARR14(2) -------HVH21   ------->GAMYB ----------------->AGL2  <----------DOF2     --------->MYB52(1) --->ANAC46    --------->MYB46(3)     ----------->GT1------>ZmHOX2a(2)    ------>MYB46(1)--------->ARR14(2)   tcagatctgaaaattcaacagtcaaaatctataccacaagtagtaaatagctggatctttattgccttatgaaaccaaatggacaaaaacatatacccta  2635200               --------->At4g35610               <---------At4g35610            <---------At4g35610            --------->At4g35610           ------->TEIL                                                  ------->TEIL         <-------TEIL                                                    ------------------------>ANAC81        --------->ANAC58                                             <---------TOE2(3)        --------->ANAC58                                           --------->AHL20(2)       ------->MYC3                                                <---------AHL20(2)      --------->DAG2       <-------MYC3                                      --------->CCA1(2)                ---------->DOF2       ------->MYC2                                     <---------ARR11(3)      ---------->DOF2       <-------MYC2                   --------->GLK1(2) --------->ARR11(3)   ----------->RAV1(1)    --------->ANAC46           ---------->DOF2  <---------YAB1    --------->AHL20(2)---------->DOF2   gattacacacatgcatctgcagacaaactgggagaaagagaatcagtgtgatgatagagatatgtcaaattaatgaatccaacaaagaaagaaaaaggaa  2635300                                      <---------ARR14(2)                         --------->HSFB2a(1)                         <---------HSFB2a(1)                         <---------HSFC1(2)                         --------->HSFC1(2)                        --------->GLK1(2)                        --------->ARR14(2)                        <---------KAN4(2)                   <---------LBD16    --------->ARR14(2)                <-----------GT1 <---------WRKY18(1)                                                <-    --------->CCA1(2) <------ZmHOX2a(1)                                                ------>ZmHOX2a(1)    --------->At4g35610<---------GLK1(2)        <---------YAB1                --------->REM1(1)<-----   acagagagatgaaagttttaaccaggaatcttcttgaccagataccatttgtgattctctgatttgcctattggcctactacatccctcctctctctcta  2635400                                     *TSS                      ------>ZmHOX2a(2)                     <------ZmHOX2a(2)                    --------->ARR14(2)                    <---------ARR14(2)        <------------MYB.PH3(2)     --------->HSFC1(1)      <-----------GT1--------->CCA1(2)                          --------->YAB1      --------->YAB1--------->AGP1  <---------HSFC1(1)       <---------ICU4   --------->YAB1   <---------AGP1  --------->HSFB2a(2)   --------->YAB1 --------->AHL20(2) <---------ARR11(3)               <---------AHL20(2)            ---------->DOF2 ---------DOF2      --------->ARR11(3) <<<<<<<ZML2------->TEIL<-----------TBP ------->TEIL--------->YAB1 ----CCA1(2) <----------DOF2        <---------HSFB2a(2)  <-------TEIL        <---------CCA1(2)  <----   tcttttaataacaaactttatagatctggttttttcttctagaactaaaatgtatttgattcatatttataactaaaatgtatctaaaagtctcataaca  2635500                                                          <------ZmHOX2a(1)                                                        <---------TOE2(3)                                             <---------YAB1            <---------AHL20(2)    <---------AHL20(2) --------->CCA1(2)       <---------YAB1        --       --------->ANAC46        <------------CBF     --------->ARR11(3)     --------->YAB1 -----------       --------->ANAC58      <---------YAB1 --------->ARR11(3)     --------->AHL20(2)     <---------ANAC55(2)       --------->ANAC58>>>>>>>>>MYB98       <---------ARR11(3)--------->ARR11(3)          --------->ANAC55(1) -----AHL20(1)<------------CBF--------->ATHB12--------->YAB1  <---------ARR11(3)          --------->ANAC55(2)   tatttgtccaagaaaaaattgtagtaacatagttattgaatttgaatatcataagatttaggaagacattttaaaaatcatatttgaataacatgtaaca  2635600                                        --------->WOX13(1)                                       --------->AHL20(2)                                       <---------AHL20(2)                                        <<<<                                      --------->AHL20(2)                                        <---- ------->YAB1           <---------bZIP60(2)                                                   <------ >GT1       ---------->DOF2      ----------->GT1                     --------->AHL20(2)    <---------YAB1   tgaataacatactaaaaagaagaatgacatggagttggaaataaatcaaactcttacaaaatacttcaaaattcaatacatcccctaatttctctgatta  2635700                                                                                 --------->ANAC58                                                                                 --------->ANAC58                                                                                 --------->ANAC46                                                                           <---------At4g35610                                                                          <-----------RAV1(1)          ---------->DOF2                                              --------->ARR14(2)   --------->ZAT18                                                  <---------ANAC58   <---------ZAT18                                                  <---------ANAC46   --------->ZAT14                                                  <---------ANAC58 --------->ANAC58   <---------ZAT14                                        ----------->HVH21--------->ZAT2 <<<<<<<<<<<<<LFY                                       <---------At4g35610<---------ZAT2           - -------GT1--------->DAG2      ------------------------>ANAC81    <-----------HVH21  --------->ANAC58 ---WOX13(1)       --------->ATHB12                     --------->At4g35610--------->At4g35610 ------   accagtggactaaaaagcggatgatttgttcaaaaccaaaaaaaaaaaaaaaaacttgggctgaaatgggtcgtgtctgctgcaagcaagcctacatatg  2635800                                                              <---------MYB52(1)                                                              ------------>CBF                                                              <------NtERF2                                                             ------>NtERF2                                                             <---------RAP2.6(3)                                                             <-----------HVH21                                                            --------->RRTF1(3)                                                            --------->RRTF1(2)                                                            --------->RAP2.3(3)                                                            --------->DEAR3(1)                                                            --------->ATERF1(2)                                                            --------->RAP2.3(2)                                                            <---------ANAC46                                                           --------->RAP2.3(1)                                                           --------->ERF1                                                           --------->RRTF1(1)                                                           <------NtERF2                                                          ------>NtERF2                                                          <---------ATERF1(1)                                                       <---------ANAC58                                                    <---------SPL7                                                   ------>ZmHOX2a(2)                                                  <------ZmHOX2a(2)          ---------->DOF2                        <---------ARR11(3)             --------->DAG2      --------->At5g28300                        <---------AGP1                ---------->DOF2 ------     ----------->GT1                             --------->ARR11(3)   <----------DOF2       ---------     <------MYB83                                --------->AGP1       <---------DAG2        <--------     <------MYB46(1)                            <---------CCA1(2) <---------ATHB12          ---------    --------->MYB59                   <-----------GT1  <---------ANAC58   <---------TOE1(3) --------- -------->ICU4                        --------->MYB52(1) --------->ANAC46 <---------TOE2(3) --------- --->ANAC55(2)             ---------->ID1      ----------->ARR10--------->WOX13(1)   ---------->DOF2   taatgttcggtaaaaagcccatttcatttgtcttaaaaaataacgaaattagatcttacgcgccgtcaatcactttaaggcaaaagtgaaagtcacgcac  2635900  Previous    Next  AGI:  At5g08185.1    Description:  MIR162A Range:  from: 2634105    to: 2635437    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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