Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->TOE1(3)        --------->TOE2(3) ------->HSFC1(2) --------HSFC1(2) --------HSFB2a(1)                                                      <---------AHL20(2) ------->HSFB2a(1)                                                      --------->AHL20(2) ---------ARR10                                                      ------>MYB83  <------MYB46(1) -------ARR11(1)                                                     ------>MYB46(1) ---->TEIL                                                     <------ZmHOX2a(2)   <------MYB83 -------ARR14(2)                                              --------->ARR11(3)  <---------AtMYB61 ------>ARR14(2)                                              <---------ARR11(3)<---------ANAC46 ------>GLK1(2)                    --------->YAB1         --------->LBD16       <---------ANAC58 ------ARR14(1)                 --------->YAB1           <---------ANAC58       <---------ANAC58 ------CCA1(2)                 --------->AHL20(2)        <---------ANAC46      <---------MYB46(3) ------GLK1(2)           ----------->HVH21               <---------ANAC58<---------AHL20(2)         <   aatcttctaaccttagaaattggctccatgacattaaaaataaccaaaaatatgttcttccgtagatcaccaaattttttttgggtggtatatggaaaac  2587500                                                                                                  ---                                                                                                  ---                                                                                                 ----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                      ----------->GT1                    --------->GLK1(1)                                   <---------------AtSPL8-------      --------->AHL20(2)      <---------TOE2(3)                         --------->HSFB2a(2)  <-------    --------->TOE2(3)   <---------YAB1          --------->AHL20(2)      <---------HSFB2a(2) ---------  --------->ICU4    <---------GLK1(1)   <---------AHL20(2)  --------->AHL20(2)    <---------YAB1 <--- ---------ETT(2) <---------YAB1<-----------RAV1(1)     --------->AHL20(2)   <-------TEIL   <---------YAB1   tgtcaacattaattctattctgatttctgatttatgttgtatttttttttttatatataaaataaaacagttttctggtacattacaaatgttataataa  2587600                                                             --------->YAB1                                                             <--------ATHB1                                                             <---------ICU4 ------>YAB1                                                 --------->ATHB12 ----->HAHB4                                                <---------YAB1 ----->ICU4                                                 --------->ICU4 --->YAB1                       --------->WOX13(1)          <---------ATHB51 ----ICU4                     <---------YAB1             <---------YAB1                --------->ATHB12 -->HAHB4                 <---------GLK1(2)            --------->YAB1                  <---------AHL20(2) -->ICU4              <------ZmHOX2a(1)         <----------DOF2                       --------->ICU4 --AHL20(2)     <---------AHL20(2)             <---------ICU4-------->ATHB1           --------->AHL20(2) >YAB1         --------->AHL20(2)          <---------AHL20(2)--------->ATHB51------>ZmHOX2a(1) ------YAB1    <---------AHL20(2)  --------->YAB1 --------->AHL20(2)       <---------ICU4   tgatcaaatccatacaattaaataggaagattatcattcatgtttttaatctttaaatcacaattattgtccattaatcctgaccatatttattagggac  2587700                                                                                                -----                                                                                         ----------->GT1                                                                                        <-------MYC2                                                                                        ------->MYC4                                              ---------->DOF2                           <-------MYC4                                            <---------AHL20(2)                          ------->MYC2                                   ------>ZmHOX2a(1)                                    ------->MYC3                                  --------->TOE1(2)                                     <-------MYC3                                 ------>ZmHOX2a(2)                                     <---------O2                                <------ZmHOX2a(2)                     <---------ANAC58 --------->TGA1a                               --------->ARR11(3)          --------->ANAC58            ==============                               <---------ARR11(3)          --------->ANAC58            <---------ANAC55(2)                  ------->TEIL --------->ARR14(2)         --------->SPL7               <---------TGA1a              <---------TOE2(3)<---------ARR14(2)    --------->MYB52(1)                --------->O2          <----------DOF2     <---------GLK1(1)      --------->ARR14(2)           ----------->HVH21--     <-----------GT1          --------->GLK1(1)      <---------ARR14(2)    <---------LBD16     ------    <-----------GT1   --------->MYB59      --------->AHL20(2)         <---------ANAC58 --------->ANAC55(2)   tagtttttatcactttaatgtattttggtaagagatcctacaaaatttaaaagcatatcggacgtaaatgtttcatgcctggatgtaacacgtgtaaata  2587800                                                                                                <----                                                                                                <----                                                                                               <-----                                                                                           --------->ANAC46                                                                                           --------->ANAC58                                                                                    <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                                                    <xxxxxxxxxxxxxxxsmallRNA(se3)                                                                                    <xxxxxxxxxxxxxxxsmallRNA(si3)                                                                                    <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                                   <xxxxxxxxxxxxxxxsmallRNA(se3)                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                                                  <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                                  <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                                  <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                                 <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                                 <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                                 <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                                 <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                                <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                                <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                                <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                                <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                                <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                                <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                                <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                                <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                                <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                               <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                               <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                              <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                              <xxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                              <xxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                              <xxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                              <xxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                            <xxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                --------->LBD16                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                <---------ANAC46   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->At4g35610                               --------->ALFIN1<-------PIF5                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               <---------ANAC58--------->LBD16             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               <---------ANAC58------->PIF5                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               <---------ANAC46<xxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxsmallRNA(fl3)                              <-------TEIL <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              <---------LBD16<xxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <---------RVE1(1)  <xxxxxxxxxxxxxxxxsmallRNA(s)                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------At4g35610    --------->ALFIN1<xxxxxxxxxxxxxxxxsmallRNA(s)<----------DOF2   --------->ANAC58 ---->AHL20(2)               <xxxxxxxxxxxxxxxxsmallRNA(s)              <---------ZAT18   --------->REM1(1) =========bZIP_DOF          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)       --------->ZAT18   <---------ALFIN1 -------->DOF2           <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <xxxxxxxxxxxxxxxxsmallRNA(se3) --->AHL20(2)  <---------AHL20(2)        <xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxsmallRNA(s)*TSS   aaaaagacaactgatattttaaaaaatggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccct  2587900                                                         <-------GAMYB                                                         =====================MYC_MYB                                                        --------->DEAR3(1)                                                        <---------MYB46(3)                                                      ------>NtERF2                                                      --------->LBD16                                                  --------->KAN4(2)                                                  <---------ARR14(2)                                                  <---------ARR11(3)                                                  --------->ARR14(2)              --------->ANAC58                                                  --------->ARR11(3)           <---------REM1(2)                                                 --------->KAN4(1)            <---------ALFIN1                                                 <---------KAN4(1)       <-------TEIL                                                 <---------GLK1(1)       --------->SPL7                                                 --------->GLK1(1)     <-----------HVH21                                                 <----------TaMYB80 --------->TGA1a     ----------->TBP                                                <-----------ARR10   --------->O2  --------->ANAC58                                                ----------->ARR10   --------->ANAC46    --------->AHL20(2)                  ------------>CBF              <---------KAN4(2)   <---------TGA1a     <---------AHL20(2)                ----------->HVH21           --------->LBD16         <---------O2<---------ALFIN1      <---------GLK1(1)                 --------->MYB52(1)<---------MYB52(1) <---------ZAT18 ------DOF2<-----------HVH21        <-----------GT1 --------->MYB46(3) --------->ARR14(2) -----DAG2--------->WOX13(1)       --------->AHL20(2)--------->ANAC46  <---------ARR14(2) ----DAG2 --------->ANAC46  --------->TOE2(3)   ---------->TaMYB80 <---------LBD16--------->ANAC46 <-   ttttgttgatatcagtcactgacaattcattcttaaataaactatccgagaatatccgccgttgcatcacacgggtccgtccacacgcatataaatgtct  2588000                                                                              ------->MYC3                                                                              <-------MYC3                                                                             <---------ANAC55(2)                                                  <-------MYC3               ========================                                                  ------->MYC3               <---------TGA1a                                         <------NtERF2                       --------->ANAC55(2)                                        <-----------HVH21                    --------->ANAC46                                        <-----------TGA1                     --------->TGA1a                                        ------>NtERF2                        --------->O2                             <---------ANAC46 <---------ZAT18      --------->ARR11(3)                          <---------MYB52(1)  --------->ZAT14      <---------ARR11(3)                          ------>ZmHOX2a(1)   <---------ZAT14     --------->YAB1               --------->At4g35610<---------ARR14(2)             <---------YAB1   --------->CCA1(2)               <---------At4g35610--------->ARR14(2)          --------->ICU4 ========================     --------->LBD16     --------->TOE2(3)    --------->ZAT18------->MYC3    <---------O2          <- ---------TaMYB80        --------------------->WRI1          <-------MYC3 ------>ZmHOX2a(1)       <--   gatattccgaaatcgactgctcacattccttaggtgtatcggcgtcagtgcacatgagtcgcacatgatgatattcctcacgtgatatgaaatgacttaa  2588100                                  ------>NtERF2                                  --------->LBD16                                  <------NtERF2                                 --------->RAP2.6(2)                                <---------DEAR3(1)                              <---------SPL7                              --------->ANAC46                                   --------->KAN4(2)                             --------->ATERF1(2)                       <----------DOF2                           --------->MYB52(1)                         <---------ANAC58                      <---------AHL20(2)                              <---------ANAC58              <                      <---------AHL20(1)                           <---------RAP2.6(2)              <                      --------->AHL20(2)                           <---------DEAR3(1)<---------ANAC46                      --------->ARR11(3)                         <------ZmHOX2a(1)   <---------ANAC58        <----------DOF2   <-----------GT1                      --------->ANAC58 --------->HSFC1(2)  -   <----------DOF2------>ZmHOX2a(1)  ---------->DOF2           --------->ANAC58 --------->HSFB2a(1) <  <---------DAG2 --------------->AGL15                 <---------At4g35610      <---------HSFB2a(1) - =============bZIP_DOF--------->AHL20(1)   <XXXXXXXXXXXXXXXXXXXXMIR169H-N       <---------HSFC1(2)  < =============bZIP_DOF<---------ARR11(3)  ---------->DOF2     <XXXXXXXXXXXXXXXXXXXXMIR169G*   ------- ----------GT1 ---------->ID1--------->MYB46(3)        --------->At4g35610 --------->ETT(1) <-------- ---------GT1 <-----------GT1<---------ATERF1(2)   <----------DOF2--------->RAP2.6(3)<---------ANAC58   ttacccttttcttttttttcctaatatattaccggccgcgaaaggaaagttgtctttagctggacaaggacggcttgtcggaaaattccttgttttacac  2588200       ------>MYB46(1)       --------->MYB52(1)     <---------MYB59  ------>MYB46(1)  ------>MYB83  --------->MYB52(1)  <------MYB83 ---------MYB111(1)   <------MYB46(1)                                 <------MYB46(1) ---------MYB46(2)--------->ARR11(1)                                  <------MYB83          ------>ZmHOX2a(2) -------->MYB46(3)<---------ARR11(3)                                 --------->MYB59       <------ZmHOX2a(2) ---------MYB111(2)--------->ARR14(1)                         <---------MYB52(1)          --------->ARR14(2) -------->AtMYB61 <---------ARR14(2)                  <---------GLK1(2)                   <---------ARR14(2) ---------MYB59   --------->ARR14(2)            <---------MYB46(3) <---------MYB52(1)<-----------GT1 -->ZAT6          --------->ARR11(3)         <-----------RAV1(1)   <<<<<<<<<MYB98   ---------->DOF2 ---GT1------>MYB83--------->CCA1(2)      <-----------GT1    <-------GAMYB     ------------>CBF<-----   taccaaaccgaaccgttcaagatttggtttcggtttacaggtattaactgttgttcgattctcggttaagttaggttttcgaacaataaaccgatcggtt  2588300                                                                                 ------>ZmHOX2a(1)                                                                       ------>ZmHOX2a(2)                                                                       <-------TEIL                                                                       =================HOX2a_HOX2a                                                                      <------ZmHOX2a(2)                                                         <---------ANAC46    <-----------GT1                                                         <---------ANAC58  --------->ARR14(2)                                                         <---------ANAC58 <---------MYB52(1)                                                       <---------YAB1 ==================HOX2a_HOX2a                                                  <---------ICU4     --------->AGP1                                            ==================================HOX2a_HOX2a                   --------->ATHB12         ------>ZmHOX2a(1)        --------->ARR14(2)                 <---------WOX13(1)         =================================HOX2a_HOX2a     --------->AHL20(2)       <---------ARR11(3) --------->ICU4      <---------GLK1(2)     <---------AHL20(2)  ------------>CBF  *TSS  <---------YAB1      <---------ARR14(2)          ---- ----MYB52(1)   <------------CBF  <<<<<<<<<TBF1--------->YAB1   ----------->RAV1(1)        ----------   tggacattaaaatccctagattgattactcaatttcttcttctctcctctcattattttgcttgagccacagatccgtttctcctctcgatttgtcttct  2588400  Previous    Next  AGI:  At5g08075.1    Description:  pre-tRNA. tRNA-Ala (anticodon: CGC) Range:  from: 2587827    to: 2587899    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g08080.1    Description:  SYP132 (syntaxin 132); SNAP receptor. Identical to Syntaxin-132 (SYP132) [Arabidopsis Thaliana] (GB:Q8VZU2;GB:Q9LEZ8); similar to SYP131 (syntaxin 131), SNAP receptor [Arabidopsis thaliana] (TAIR:AT3G03800.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39860.1); contains InterPro domain Target SNARE coiled-coil region (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain Syntaxin/epimorphin, conserved site; (InterPro:IPR006012); contains InterPro domain t-SNARE; (InterPro:IPR010989) Range:  from: 2588343    to: 2591317    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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