Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           --------->ANAC58                                                         --------->ANAC55(1)        --------->AtLEC2                                                         --------->O2             --------->CCA1(2)                                                         <---------O2            --------->ARR11(1)           ---------->DOF2                               <---------TGA1a         <---------ARR11(3)         --------->YAB1                                  --------->TGA1a         --------->ARR11(3)      --------------->AGL15                              --------->ANAC46        --------->ARR14(2)      <---------------AGL15                              --------->ANAC55(2)     <---------ARR14(2)   <---------ARR11(1)                                    --------->ANAC58      ----------->ARR10<----  ------>MYB83                    <---------ICU4     <-----------GT1    <---------ANAC58      <------MYB46(1)  ------>MYB46(1)                <---------YAB1  --------->ICU4         --------->ALFIN1  --------->ATHB12 -------->AtMYB61              --------->YAB1 XXXXXXXXXXXXXXXXXXXX>MIR400    --------->REM1(2)<------MYB83 ------>GAMYB             <---------GLK1(2) <---------YAB1              <---------ANAC58 --------->ICU4   aaccaaatctataaaaagcatttactcaaattctcatcattttttgatgaaagtattacacgtctctagttagtgtgtgtgtagatatgcaaagattggt  2571700                                                                  --------->ARR11(3)                                                                  <---------ARR11(3)                  ---------->DOF2                                <---------CCA1(2) ---------->DOF2         <-----------HVH21                     ----------->GT1------->TEIL      <-----------HVH21 -----REM1(1)--------->At4g35610            --------->ALFIN1<<<<<<<<<EIN3      <---------ZAT6 -------   gtaacttatcttgtcatatgcaaagaaactgaagagagaagaagatgtgttgtcaaattcaatgtatatatcttaagaccagtgtcaaagcttaagatgt  2571800                                                                                       <-----------HVH21                                                                                      <------MYB46(1)                                                                                      <------MYB83                                                                                     <---------MYB46(3)                                                                                     --------->MYB59                                                                                     <------MYB83                                                                                     <------MYB46(1)                                                                                   <--------P                                                                                  <-------GAMYB    <----------DOF2                                                              --------->MYB55(2)   <---------ICU4                                 <---------HSFB2a(2)            <---------MYB46(3) --------->GLK1(2)               <---------At4g35610    ---------->DOF2       <---------ZAT2 ---->GT1                        <---------GLK1(1)--------->HSFB2a(2)         --------->ZAT2   gataatctttaagaccatctccaaaactccgatggagatgctctaagtttttctggcagaaagaagagtcttttgaaacctgctggttgggtcagagagt  2571900                                                                                 <---------ICU4                                                                                 --------->YAB1                                                                                 <--------HAHB4                                                                                 --------->ATHB51                                                                                --------->ICU4                                                                            <------NtERF2                                                                           --------->LBD16          <------NtERF2                                                    ------>NtERF2         ------>NtERF2                                                    <---------ANAC46   --------        --------->RAP2.6(2)                                              <---------LBD16     --------        <----------ID1---------->DOF2                                  <---------DEAR3(1)    <-------       --------->RAP2.3(1)                                        <---------AHL20(2)   <----------ID1       --------->ATERF1(1)                 --------->At5g28300   --------->AHL20(2)   <---------TOE2(3)      <---------ATERF1(1)            ---------->DOF2             <---------AHL20(2)  --------->MYB52(1)   ttgagagaaggcgccaaataaaccaaaagctagacaagaagaagcggtgaagttttgaaaacgagaataaaattcggcgggaataattaacgaaaaatct  2572000             --------->ARR14(2)             <---------ARR14(2)             <---------ARR11(1)             <---------ARR11(3)             <-----------ARR10             --------->GLK1(2)         --------->LBD16        --------->ANAC58        --------->ANAC46        --------->ANAC58       --------->LBD16       <---------LBD16                                 ------>ZmHOX2a(1)      --------->LBD16                                <---------ANAC58 --------->At4g35610<----------DOF2                  <---------ANAC58 ->ARR11(3)  --------->ARR11(3)            <---------ANAC58                                        -- ->GLK1(2)  --------->GLK1(1)              <---------ANAC58            ---------->DOF2          <---- --ARR11(3) <---------CCA1(2)            <-----------GT1         ---------->DOF2                <----   aatagctcccgcgcaaatctttcttttacaaaacaaaaccattttgcttcccatttcctgtgaattctaaagagaaagaagagatagagctagagattaa  2572100                                                                                  --------->LBD16                                                                                 --------->ANAC46                                                                                 --------->ANAC58                                                                                 --------->ANAC58                                                     --------->WOX13(1)   <---------MYB52(1) ------->CCA1(2)    <-----------------AGL1         <---------ATHB12      <-----------HVH21         <- -----TOE2(3)       ----------------->AGL1       --------->WOX13(1)   ------>ZmHOX2a(1)            <- -----YAB1       ----------->HVH21  ----------->RAV1(1)            ------>ZmHOX2a(1)               <-   gatagagatggagaactcagtgacccaagatggtatcgcgacagtattagccaatcaatcccttgattcctcctctgttagacccgaaattgttgttcaa  2572200                               --------->ANAC58                 --------->HSFB2a(2)                 <---------HSFB2a(2)               --------->ZAT2  --------->ANAC58      ------>ZmHOX2a(2)        --------->ANAC55(2)               ------>ZmHOX2a(2)    <---------ARR14(2)         <---------ANAC55(2)             <---------ARR14(2)    --------->ARR14(2)         --------->ANAC46           <---------AtLEC2    <---------ARR11(3)         --------->ANAC55(1)    <---------ANAC58    <---------AGP1   --------->GLK1(1)                <---------ANAC58    --------->ARR11(3)     --------->CCA1(2)          <---------ANAC46                             <-   <---------CCA1(2) <---------GLK1(1)            --------------------->WRI1                    ----- --------ANAC46<---------At4g35610          ------>ZmHOX2a(2)  --------->ARR14(2)            ------>MYB83 --------ANAC58--------->At4g35610<---------TOE2(2) <---------ANAC46      <---------At4g35610------>MYB46(1) --------ANAC58<---------ZAT2 <-------TEIL--------->ARR11(3)   <---------AGP1              <---------MYB59   gtcgtggatcttaagcctgctggaaatcgatatacgtaagtttcgatcttgattttgtgtgcatcgatctgggttcttctgatatgtttagaaccaaact  2572300                            ----------->GT1                            <---------ZAT6                    ------>ZmHOX2a(2)                                           ------>ZmHOX2a(2)                   <------ZmHOX2a(2)                                           <------ZmHOX2a(2)                   --------->CCA1(2)                                          --------->ARR14(2)                  --------->AGP1                                              --------->ARR11(3)                  --------->ARR11(3)                                          <---------ARR14(2)                  <---------AGP1                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <---------ARR11(3)                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <---------ARR14(2)                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------YAB1     --------->ARR14(2)                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ---------->AGL15<---------GLK1(1)          --------->O2<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   tgttatagaatagggtttgagatctgggtattgttagaattttgccaagtctcagtttttttttttttttttttttttgggatctagtttcaggtctgtg  2572400                                                                             --------->ATHB12                                                                             --------->YAB1                                                                             <--------ATHB1                                                                             <------------ATHB5                                                                            <---------ATHB12                                                                            --------->ICU4                                                                         <---------------AGL15                                                                         --------------->AGL15                                                                        ----------------->AGL2                                                                        ----------------->AGL1                                              --------->ANAC55(2)       <-----------------AGL2                                     <---------ARR14(2)             <---------ANAC58             ----                     <-----------GT1 --------->ARR14(2)             <---------ANAC58           ------             --------->AHL20(2)      --------->GLK1(2)        <---------TOE2(2)           <---------YAB1        --------->YAB1               <---------ARR11(3)       <---------TOE1(2)     --------->ICU4  <----------DOF2 --------->YAB1     --------->ARR11(3)      <-----------RAV1(2)  ---------->DOF2----   ttagctttaatcaaattcaatattaactggtcgatgaagtatcttgacatgtgatttgggttctcaggtttagtgccaatgatggaaagatgaagattaa  2572500                                                                                         --------->ARR11(3)                                                                                         <---------ARR11(3)                                                                                        --------->YAB1                                                   ----------------------->TaNAC69(2)  <---------ATHB12                                                  <---------ARR14(2)                <---------WRKY12                                                  --------->GLK1(2)          --------->ZAT14                                             <-------TEIL                    <---------ZAT14     ----         --------->ANAC46           --------->HSFB2a(2)                      --------->ARR14(2)  ----        --------->TOE1(2)           <---------HSFB2a(2)                      <---------ARR14(2)  ----     <-----------GT1       <---------bZIP60(1)   <---------GLK1(2)        <---------ANAC46       ---- ----->ANAC58              --------->bZIP60(1)--------->YAB1            XXXXXXXXXXXXXXXXXXXX>MIR397B ---->DOF2                 --------->GLK1(1)--------->CCA1(2)     ---------->ID1  <-----------HVH21 ----->ANAC58  <----------DOF2     <---------LBD16--------->ARR14(2)  --------------------->WRI1-----   agcaatgttaccagcgactttgacttctgatatcatctctggaaagattcagaatctgggtcttattcgtctccttgagtataccgtcaatgatattcca  2572600  Previous    Next  AGI:  At5g08010.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G61040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41860.1) Range:  from: 2569607    to: 2571735    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g08020.1    Description:  replication protein, putative. similar to replication protein, putative [Arabidopsis thaliana] (TAIR:AT5G61000.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71402.1); similar to 70 kDa subunit of replication protein A [Ipomoea nil] (GB:BAF64713.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64422.1); contains InterPro domain Replication factor-A protein 1, N-terminal; (InterPro:IPR007199); contains InterPro domain Replication factor-A, C-terminal (InterPro:IPR013955); contains InterPro domain Replication factor-a protein 1 Rpa1; (InterPro:IPR004591); contains InterPro domain Nucleic acid binding, OB-fold, tRNA/he Range:  from: 2572108    to: 2574880    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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