Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    <---------ARR14(2)  --------->ARR14(2) <----------TaMYB80                                                                                 < --------->TaMYB80                                                                               <--- ->ATHB12                                                                                 <---------HSFB2a(1) >ATHB1                                                                                   --------->HSFC1(2) --ICU4                       ----------->GT1                                             <---------HSFC1(2) -YAB1                   ---------->DOF2 ----------->RAV1(2)                              --------->HSFB2a(1) -ATHB12       --------->AtLEC2     <---------ICU4  ---------->DOF2                   <---------TOE2(3)   ggcatatacctattgccatggaaacacaaaagcagtaagaatcaccagggacatcaaagtgaaacagagtaagttgcaaatacaaattaagaaaattcca  2541800                                                --------->LBD16                                               --------->ANAC46                                              --------->HSFB2a(2)                                              <---------HSFB2a(2)                                              <---------LBD16                                         <------ZmHOX2a(2)                                        --------->ARR11(3)                                        <---------ARR14(3)                                        --------->AGP1                                        <---------ARR14(2)           <-----------RAV1(1)                                        --------->ARR14(2)           =============================RAV            --------->ARR14(1)          <---------ARR11(3)       --------->MYB46(3)            --------->CCA1(2)         ----------->ARR10 --------->ANAC46           --------->ARR11(1)     <---------ANAC58      --------->ANAC58    <---------RAP2.6(3)           --------->ARR14(2)     <---------ANAC58      --------->ANAC58    ------>NtERF2           <---------ARR14(2)     <---------ANAC46     --------->TOE1(2)   <---------ETT(1)     ----------->HVH21  --------->ANAC58--------->ARR14(3)      <------ZmHOX2a(2)               ----- ----------DOF2         --------->ANAC58<-----------ARR10      --------->ARR14(2)             >>>>>>> ------ALFIN1<-------TEIL  ---------->DOF2------>ZmHOX2a(2)    <---------ARR14(2)     <-----------RAV1(2)   cacttttgtgacagatacgaattgactagcaaagtagcgtgagatcttcccgcagaacaagcgacgatccactgttgccgacaattcgacaggttagacc  2541900                       --------->At4g35610                       <---------At4g35610                       --------->ZAT2                    --------->At4g35610                    <---------At4g35610                <----------CDC5                              --------->LBD16               --------->LBD16                               --------->ANAC46           --------->GLK1(2)                                <---------HSFB2a(2)          ------>ZmHOX2a(2)           --------->ARR14(2)                               <---------LBD16             <------ZmHOX2a(2)          <---------GLK1(2)                                 --------->HSFB2a(2)     <------NtERF2      ------>ZmHOX2a(1)<---------ZAT2                       --------->LBD16    --------->ANAC58     --------->TOE1(2) ----------->RAV1(2)       <----------ID1        --------->At4g35610<---------HSFB2a(2) ---->AtMYB61  --------->At4g35610               ----------->GT1       <---------At4g35610--------->HSFB2a(2) >>>>>>>>>>LFY <---------At4g35610            ----------->TGA1--------->LBD16  --------->ANAC58     -   actggttcctaagattccgctgagcagctggtctccatagcctcatcgatgacgaaaaactccccggagatggagatgaagaagccagcgatcgcgaaga  2542000                              --------->TOE1(2)                           --------->ARR14(2)                           <---------ARR14(2)                          <------NtERF2                         --------->LBD16                        <---------ANAC46                       --------->ATERF1(1)                       <------NtERF2                       <---------LBD16                       --------->At4g35610                       <---------At4g35610                       --------->RAP2.3(1)                      <---------ATERF1(1)                      <---------ERF1                      <---------ORA47(2)                      ------>NtERF2                                                                 <                      <---------RAP2.3(1)                                                           -                      <---------RAP2.6(1)                                                          --                      <---------DEAR4(2)                                                           <-                      <---------RRTF1(1)                                                         <---                     <---------RAP2.3(2)                                                        <----                     <---------DREB2C(2)                                                        -----                     --------->ALFIN1                                                           -----                     <---------RRTF1(2)                                                         <----     <------NtERF2   <---------ATERF1(2)                                                        <----    --------->LBD16  <---------DEAR3(1)                                                         <----   <---------ANAC46  --------->ATERF1(2)                                                        <----   --------->DEAR3(1)<---------RRTF1(3)                                                         <----  --------->ATERF1(1)<---------RAP2.3(3)                                                        -----  <---------LBD16   <---------ABI4(1)                                                        <-------  <------NtERF2     --------->ATERF1(1)                                             ------>ZmHOX2a(1) ------>NtERF2     <---------ATERF1(1)                                        <---------ALFIN1  <---- -------->ANAC46 <-----------RAV1(2)                                          --------->ZAT6<--------   agacgccggagatggagaagcaggcggcggaaactgcgagatgctcatcgaatacaaaacgagttttttgagcttgagtcacactcctaaactctgttac  2542100    <------NtERF2   --------->LBD16   ------>NtERF2  <---------LBD16  --------->LBD16 <------NtERF2 --------->ATERF1(1) <---------LBD16 ---------RAP2.3(1) ----->NtERF2 ------->DEAR3(1) --------DEAR3(1) --------HVH21 -----bZIP60(2) ---->O2           <------NtERF2                                                     --------->YAB1 ---->bZIP60(1)   <---------ATERF1(1)                                            <---------YAB1 -----TGA1a       --------->LBD16                                               ------------>CBF -----ANAC58      ------>NtERF2                         <---------DAG2      ----------->GT1 -----bZIP60(1)  <---------ATERF1(2)                    <----------DOF2    --------->DAG2 -----ANAC58     --------->ATERF1(2)           --------->At4g35610       ---------->DOF2 -----ANAC55(2)  --------->DEAR3(1)            <---------ZAT2         <----------ID1 ----------->GT1 ---->ANAC55(2)  <---------DEAR3(1)            <---------At4g35610    --------->ANAC58        ------- --MYB52(1)     --------->ATERF1(1)            --------->ZAT2         --------->ANAC46       <------- -----O2        --------->SPL7              --------->MYB46(3)        --------->ANAC58    --------->ICU4 ---HVH21    --------->MYB46(3)      *TSS  --------->ANAC46       --------->CCA1(2)<------------CBF   gtcgccgggaattgaacggccggcgatagtttgttttctatttccacccagcttagggctttatgaagaaatacgaaaaggttacaattgtaattttcat  2542200                               <---------YAB1                             --------->YAB1                             ----------->GT1                           <------------CBF                         <---------YAB1                        <---------AHL20(2)                        --------->AHL20(2)                       --------->YAB1                    <---------AHL20(2)              <---------AHL20(2)                   --------->AHL20(1)     --------->YAB1                   --------->AHL20(2)     <---------ICU4                   <---------AHL20(2)    <---------ATHB51                                           <                   <---------AHL20(1)    <---------ATHB12                                          --                  <---------AHL20(2)     --------->ICU4                                            <-                  --------->AHL20(2)   --------->WOX13(1)          --------->GLK1(2)       <------ZmHOX2a(2)              <---------AHL20(2)     ------------>CBF      <------ZmHOX2a(2)              <---------AGP1 -->YAB1      --------->AHL20(2)  --------->ICU4    <---------YAB1<---------GLK1(2)<---------At5g28300 --YAB1   ----------->GT1<---------AHL20(2)    *TSS--------->AHL20(2)          <---------ICU4   -----   aaacttctgaacttgtttaaattaattttaattgtaattagcaattatgtctatataatagatcaatagaatctctaagaagaattacagtagatcagat  2542300                                                                                         --------->ANAC46                                                                                         --------->bZIP60(2)                                                                                         --------->ANAC58                                                                                         --------->ANAC58                                                                                        <---------LBD16                           ==========================HOX2a_HOX2a                       <---------ALFIN1               --------->ZAT2 ---------->DOF2                      --------->ANAC58  <------ZmHOX2a(2)               <---------At4g35610                            --------->LBD16  <---------WRKY12         ------>MYB83      <------ZmHOX2a(2)                 <---------O2      <---------WRKY38(1)         --------->MYB52(1)--------->CCA1(2)                 <---------ANAC46 ----------->HVH21         ------>MYB46(1)  --------->AGP1                     --------->O2   <---------DEAR3(2)      <    <-----------GT1       <---------ARR11(3)                 --------->ANAC55(2)    <---------ARR14(2) ---------AHL20(2)        --------->ARR11(3)                <---------LBD16<---------At1g77200      < ------->AHL20(1)        --------->GLK1(1)               <-----------HVH21 <---------DEAR3(1) <------NtERF2 --------AHL20(1)        <---------GLK1(1)    <------ZmHOX2a(1)    --------->ANAC58 --------->ARR14(2) ---->CCA1(2)  --------->At4g35610          <---------TOE2(3)<---------ANAC55(2)<---------DOF5.7(2)<-   atatatttaccaatcggagcttcagagagatccaaagagagagattgaggatgtctcacagtcacgggaacgcttcgtcggtgaacgatccacggcagcc  2542400                                           ------>ZmHOX2a(2)                                          <---------HSFB2a(1)                                          --------->HSFB2a(1)                                          <------ZmHOX2a(2)                                ------>NtERF2                                          <----------TaMYB80                               --------->LBD16                                         <---------ARR14(2)                               <---------DEAR3(1)                                         --------->ARR14(2)                               --------->ANAC46                                         --------->ARR14(3)                              <---------LBD16                                         <---------ARR11(3)                            --------->ARR14(2)                                         --------->ARR11(3)                           --------->ATERF1(1)                                     <------NtERF2 --------->WRKY38(1)               <---------ATERF1(1)      ---------->DOF2              --------->DEAR3(1)                                <-----------HVH21    <------NtERF2                  <---------ANAC46--------->WRKY12                  ------>NtERF2   ------>NtERF2                  <------NtERF2   <---------MYB52(1)      --------->DOF5.7(2) <------   --------->RAP2.6(2)            <---------LBD16<-------GAMYB           <-------GAMYB<------NtERF2  <---------DEAR3(1)              --------->ATERF1(1)            <-------TEIL   <---------LBD16<-----  <---------ATERF1(2)            <---------RAP2.3(1)           <---------ARR14(2)  <------NtERF2  --------->ATERF1(2)    <---------ANAC46--------->GLK1(2)     --------->ARR14(2)<---------DEAR3(1) <---------LBD16      --------->ANAC46   <---------ARR14(3)  --------->LBD16    ------>ZmHOX2a(1) ---------ATERF1(1)   --------->ANAC58   <-----------ARR10 <---------LBD16<---------MYB52(1)<-------- ---------RAP2.3(1)   --------->ANAC58  <------ZmHOX2a(1) --------------------->WRI1<---------DEAR3(1) --------DEAR3(1)    <---------LBD16--------->LBD16--------->WRKY45  --------->DEAR3(1)<---------ARR14(2)   ttcggcggcaaagccttacattccacggcctgtagcgccggaggatcttcccgttgactactccggattcatcgccgttatcctcggcgtctccggcgtt  2542500                                                                                       <---------ANAC46                                                                                  <------MYB46(1)                                                                                  <---------MYB46(3)                                                                                  ----------->GT1                                                                                  <------MYB83                                                                                 --------->MYB111(2)                                                                                 --------->MYB55(2)                                                                                 <---------MYB46(3)                                  <-------GAMYB                                  <---------DEAR3(1)      --------->At5g28300        <---------MYB46(3)                              <---------AtMYB61     ----------->GT1       <---------At4g35610                                   --------->MYB46(2) -    --------->LBD16     ------>ZmHOX2a(1)                                       <---------MYB55(1)  <   <---------ANAC46     ================HOX2a_HOX2a                             <--------P    ------>ZmHOX2a(2) ----DOF2     <---------YAB1     ------>ZmHOX2a(2)                             <-------GAMYB<-------- ----MYB52(1)<-----------GT1 <---------YAB1                                    <---------MYB52(1)<--- -------------WRI1  <-----------GT1               <---------ATHB12          <---------LBD16 ---------   atgttcagggtaaattttcatttctcctcttctgatcgttgctctgttagaaatcaattcagtcgtagaaactagtactccggttggtgacttagatcgt  2542600                                                                        <----------DOF2                                                                       <---------HSFB2a(1)                                                                       ------>ZmHOX2a(2)                                                                       --------->HSFB2a(1)                                                                     --------->ARR11(3)   <---------AHL20(2)                      <---------STY1(2)         <---------AGP1--------->ANAC46 -------->ARR14(2)                         --------->STY1(2)         <---------ARR11(3) ---------ARR14(2)                 --------->WOX13(1)                <-----------ARR10 -ARR11(3)                      --------->TOE2(3)                    --------->ARR14(2) ------TOE1(2)                 --------->REM1(1)  <---------ANAC58   <---------ARR14(2) >ARR11(3)                   ----------->RAV1(1)  <---------ANAC58  <---------CCA1(2)          <-----   cggattttataagttgaactcaccgatttagcaacatcaatctctagctagttcgtgatgttttgagactggatctttccaatactcgctagtgattttg  2542700  Previous    Next  AGI:  At5g07950.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO64456.1) Range:  from: 2540285    to: 2542137    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g07960.1    Description:  Identical to UPF0139 protein At5g07960 [Arabidopsis Thaliana] (GB:Q9SD88); similar to unknown [Populus trichocarpa] (GB:ABK93624.1); contains InterPro domain Protein of unknown function UPF0139 (InterPro:IPR005351) Range:  from: 2542247    to: 2543460    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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