Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->MYB46(3)                                        --------->ANAC58                                       ------->GAMYB                                      <---------MYB111(2)                                      --------->MYB46(3)                                      <---------MYB55(2)                                  ------>MYB83                                  ------>MYB46(1)                                 ----------->RAV1(1)                                ------->GAMYB                                --------->AtMYB61                               <---------MYB52(2)                                       -------------                               <---------MYB55(2)                                       <------------                               --------->MYB46(3)                                      --------------                             ------->GAMYB------->GAMYB                                --------------                 --------->WOX13(1)--------->MYB46(3)                                  --------------              --------->ANAC58--------->ANAC46                                         --------------         --------->AHL20(2) --------->MYB46(3)                                       <-----------GT1        --------->AHL20(2)  <---------MYB55(2)                                    <---------ICU4        <---------ATHB12    <---------MYB111(2)                                  --------->ICU4   --------->TOE2(3)   --------->TOE2(3)--------->ANAC58       <---------YAB1    <---------YAB1------ ---MYB46(3)  --------->ANAC58--------->ANAC58               <---------ICU4    --------->YAB1-------- --TOE1(2)    --------->ANAC46--------->ANAC58               --------->YAB1  --------->AHL20(2)<-----   tccaacgtcaataaataagcaattacatcaacaaccaacaacaaccaaaaaatccaagtttgatcatgactgaattcaataacataattaccacaaaaag  2500800     <---------ARR14(2)     --------->ARR14(2)     <---------GLK1(2) -->AGL15 ---AGL15 --->AGL1 --->AGL2          ------>ZmHOX2a(2) --->AG          <---------ARR11(3)                                         --------->DAG2 --->AGL3        --------->ARR11(3)                >>>>>>>>>MYB98          ---------->DOF2 ----->GT1     <---------YAB1                  --------->YAB1   ------>ZmHOX2a(1)        --------->ARR11(3) -->DOF2 <------MYB46(1)                       ----------->GT1  <----------DOF2        <---------YAB1 -----ID1<------MYB83                    <---------ZAT6       ------>ZmHOX2a(2)    --------->YAB1   aaaaacagatttggtttatgatctcaagttttgatcaagactagagttatagtaacatagttgatcctttaacaaaaaaaagttatagtaagatagttct  2500900                                                                                       <---------ICU4                                                                                       --------->ATHB51                                                                                    <--------HAHB4                                                                                    <---------ICU4                                                                                   <---------ATHB51                                                                                   --------->AHL20(2)                                                                                   <---------ATHB12                                                                         ------>MYB83  --------->AHL20(2)                                                                       <---------MYB55(2)                                                                       --------->MYB46(3)                                                                      --------->ANAC58 <---------AHL20(2)                                                                   <------ZmHOX2a(2)--------->ATHB51                                                                  --------->ARR11(3)--------->YAB1                        <---------YAB1                            <---------ARR11(3)<--------ATHB1                 <---------At4g35610              <---------ARR11(3)  --------->ANAC46<---------YAB1                 --------->At4g35610          ---------->DOF2<----------DOF2       --------->ICU4               <---------WRKY38(1)    <-------TEIL--------->ARR11(3)  --------->ANAC58--------->ICU4               <---------WRKY12      --------->CCA1(2)   <-----------GT1 ------>MYB46(1)   aagaaattacaatgaagtcaactgtgatgaaaatgtgagatacaaatagaaagatgttgttacctttagatcacccaactcttcaataattattttccca  2501000                            --------->At4g35610                             ----------->GT1                            <---------At4g35610                    <------ZmHOX2a(1)    --------->GLK1(2)                    <---------ZAT14                        --------->HSFB2a(2) --------->ATHB12                  --------->HSFB2a(2)                      <---------HSFB2a(2)<---------YAB1        -   aaaaaaaaaaaaaaactcttagagaactgaagctgaagaacaaaatactaaatagttttgtccagaagaggatgaagagtgtgattagagaatttgagaa  2501100                                                         <---------WOX13(1)                                                      --------->AHL20(2)                                                      <---------AHL20(2)                  <----------                                                    <----------DOF2                --------->GLK1(2)                                                    --------->TOE2(3)              <---------ARR14(2)                                                 --------->ARR11(3)                --------->ARR11(3)             ----------->ARR10                   <---------ARR11(3)                --------->ARR14(2)       ---------->DOF2                        --------->MYB46(3)             <------ZmHOX2a(1)  -----   <----------ID1                          <---------WRKY38(1)  ---------->DOF2    <---------ARR11(3) --------->DAG2                            <---------WRKY12   --------->ANAC58    <---------GLK1(2) --------->DOF2    --------->ATHB12       --------->WRKY18(1) --------->ANAC58    <---------ARR14(1)   gaaaaaggagaaagttagatttgattagaagaaaaacaaatgaggtcaacaaatctttaattgaacgaaagagagggaaggagagaatcttttgacaatt  2501200                                                          <---------AHL20(2)            <-----------GT1                              --------->AHL20(2)                         -          *TSS                                           --------->AHL20(1)                         <         --------->ARR11(3)                              <---------AHL20(1)                        --         <---------ARR11(3)                              <---------AHL20(2)                        <-         <---------AHL20(1)                         ------------>CBF         <---------AHL20(2)    <-         --------->AHL20(1)                        <-----------GT1          <---------AHL20(2)     -- -GT1    <---------ICU4      <---------YAB1    --------->ARR11(3)           --------->AHL20(2)     <- ---->AHL20(2)           <----------DOF2     <---------YAB1        ----------->HVH21               --   ttttcttctaatattttcagttttggactttattaatacagagccatatgattttgcaatttattctaagtgaccatattaattagtcaaaacatgttta  2501300                                                <---------AHL20(2)                                               <-----------GT1                                    <--------ATHB1                                    -------->HAHB4                                    --------->ATHB12                                    <---------ICU4           <----------DOF2          --------->ATHB51 ------>ZmHOX2a(2)                 --------->AHL20(2)              <---------AHL20(2) -------->CCA1(2)                  --------->ICU4                  --------->AHL20(2) ------ZmHOX2a(2)                  <---------AHL20(2)          <---------YAB1 ------->ARR14(2)                  <---------ATHB51      --------->AHL20(2)                       --- --------ARR14(2)                  <---------YAB1        <---------AHL20(2)                  -------- --------ARR11(3)            ----------->GT1--------->ATHB51 --------->YAB1    ----------->GT1    <-- ------->ARR11(3)         ---------->DOF2   <---------ICU4  <---------YAB1 <---------YAB1 --------->YAB1 --------AGP1          --------->TOE2(3)    --------->AHL20(2)<---------AHL20(2)         <---------YAB1 ------->AGP1       ----------->RAV1(1)     <---------AHL20(2)--------->AHL20(2)      <---------AHL20(2)   agatctagtatttcttttgatacaacataaaaggaaaataattgaattatttcatttcatttattaaaattaaactgaagattgaaaatttatgatggta  2501400                                                                                               ------                                                                                              -------                                                                      <----------DOF2         <------                                                                   <---------TOE2(3)          <------                                                             <---------AHL20(1)               -------                                                             --------->AHL20(1)           --------->LBD16                                                             --------->AHL20(2)         <---------LBD16                                                             <---------AHL20(2)         ------>ZmHOX2a(2)                                                  <---------ANAC46 <---------TOE1(3)   <------ZmHOX2a(2)                                           --------->YAB1    <---------ARR11(3)       <---------ARR14(2)                                           -------->HAHB4    --------->ARR11(3)       --------->ARR14(2)  --------->YAB1                        --------->YAB1    <---------AHL20(2)      <---------LBD16 ------>MYB46(3)                       <---------AHL20(2) --------->AHL20(2)    ----------->HVH21 --- --->GT1     --------->TOE2(3)        --------->AHL20(2)<---------AHL20(2)<---------TOE1(3)   ------- -------MYB52(2)            --------->YAB1<---------YAB1--------->AHL20(2)<---------TOE2(3) ---------   acaaacaaaattcaaacttaaaaaactcaatagtagtccatataataatactgtgtatattaatatattaagcttttaggttttgacggatcgggagata  2501500                                                                                                -----       --------->DAG2                                                                          <-----      ---------->DOF2                                                                         <------ --->CCA1(2)                                           ------>MYB46(1)                        ------- -->ARR11(3)                                         <---------MYB59        <---------AHL20(1)------- ---ARR14(2)                                         --------->DREB2C(2)    --------->AHL20(1)------- ---ARR11(3)                                        --------->DEAR3(2)      --------->ARR11(3)<------ -->ARR11(1)                                       ------->TEIL   <----------DOF2         --------->CCA1(2) -------->GT1                               --------->LBD16   <---------GLK1(2) ----------->GT1------ -->ARR14(2)                            <---------SPL7 ------>MYB83  <---------YAB1  ---------->DOF2 -->ARR10   <----------DOF2---------->DOF2<---------LBD16<----------DOF2 --------->AHL20(2) ---------   tggaaacaaaaagtctttttgtatttttctaaagaatgatgccttccgcgatggaccgactttggattcttttgattatatattgcaaaaagataagatc  2501600                                                  <---------ANAC58                                                 --------------->AtSPL8                                              -------->HAHB4                                              <--------ATHB1 ->ZmHOX2a(2)                                 <---------ICU4 -ZmHOX2a(2)                                 <---------ATHB51 ---ARR14(2)                                 <---------ATHB12 -->AGP1   <---------HSFB2a(2)               --------->ICU4               --------->AHL20(2)      <-- -->ARR14(2)                               --------->YAB1               --------->ANAC58       <----- -->ARR11(3)                        <---------ICU4<---------ANAC58      ----------->GT1       ------- ---ARR11(3)                        --------->AHL20(2)                  --------->ANAC58      <------ --->CCA1(2)  ---------->DOF2      <---------AHL20(2)            <---------AHL20(2)   ----------->GT1 -->ARR10  --------->HSFB2a(2)     --------->AHL20(2)            <---------YAB1--------->YAB1 -------   tacatgctgacttccaaaaagaacagagatgctctaaataatttctaataattcgtgccatttctatattattcaagtaaataatactttgtaaaattta  2501700  Previous    Next  AGI:  At5g07820.1    Description:  similar to chromosome scaffold protein-related [Arabidopsis thaliana] (TAIR:AT5G61260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15046.1); contains InterPro domain Calmodulin-binding, plant (InterPro:IPR012417) Range:  from: 2498750    to: 2501210    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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