Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            ----------->GT1                                                          <---------ANAC46                                                      <---------DAG2                                                      <----------DOF2                                                     <---------DAG2                                                   --------------->AGL15                <----------DOF2                                                  <-----------------AG           <-----------TGA1                                                  <-----------------AGL1         <-----------HVH21                                                 <-----------GT1                <---------ANAC58              <---------YAB1                    <-----------GT1                 <---------ANAC58   cttcgttcttcgcattatactaaaacccctaaaaaatcggagactcaaaatttccccttttcgtaaaattctcttctacatttcgtcaccctttaacaaa  2498100                                               --------->GLK1(2)          --------->ANAC46                    <---------GLK1(2)    --------->ZAT18          --------->ANAC55(2)       --------->REM1(1)              <---------ZAT18      <---------DAG2          --------->ARR11(3)             <---------TOE2(3)      <----------DOF2         <---------ARR11(3)           ----------->HVH21            <------NtERF2   aaacaaaactttacgcgagaaaactcagagaagaacttacatcagatagaatctttctcaattgacgaaggcactcttgttcttcagggcatcgaaaccc  2498200                                                       --------->ANAC58                                          ------>ZmHOX2a(2)            --------->ANAC58                                         <------ZmHOX2a(2)            <---------ZAT18                                         --------->GLK1(1)        <---------ATERF1(2)                                        --------->ARR11(3)        --------->HSFB2a(2)                                        <---------AGP1 --------->ANAC46--------->ANAC58                                        <---------ARR11(3)        <---------HSFB2a(2)                  ------->GAMYB =================HOX2a_HOX2a      --------->ANAC46               --------->ARR14(2)       <---------ARR14(2)       <---------LBD16               --------->MYB52(1)       --------->ARR14(2)   <---------DAG2               <---------ARR14(2)       --------->AGP1 --------->ANAC58--------->ZAT6              ----------->HVH21 <------ZmHOX2a(1)    <---------ANAC46<---------ALFIN1            <---          --------->LBD16       ================HOX2a_HOX2a  <----------DOF2                   <-----         --------->DEAR3(1)  <-----------RAV1(2)  ----------->HVH21--------->LBD16         --------->MYB52(1)        --------->MYB46(3)   --------->YAB1       ----------->TGA1<---------ETT(1)       <---------SPL7        --------->DEAR3(2) --------->GLK1(2)    ----------->RAV1(2)------>NtERF2       --------------   ttgcaattgaaccggcgtaaccgaaaacgaatcaggagaacagatctcgagcctgacgcgaaacttttccggcacactagtactcaatactcgtaccggt  2498300                                                                       <---------ARR11(3)                                                                       --------->ARR11(3)                                                                  --------->TOE2(3)                                                                  --------->TOE1(3)        <---------ARR14(2)               <-----------HVH21       ===============================RAV        --------->ARR14(2)       <---------MYB52(1)              =========================RAV   --------->ARR14(2)          ----------->GT1     <---------ETT(2)   --------->GLK1(1)         -----   <---------ARR14(2)     --------->ANAC58      <----------DOF2  ----------->RAV1(2)  <---------ANAC46 ----TEIL                 --------->ANAC58--------->WRKY18(1)   -------->P    <-----------RAV1(1) ----MYB52(1)         <------ZmHOX2a(1)  <---------RAP2.6(3)--------->At4g35610       --------->ALFIN1 ->AtSPL3--------->GLK1(1)<---------ALFIN1<---------MYB52(1)<---------At4g35610     <-----------RAV1(1)   tcgtagttccgatacccttcttgaggacacacatcgttactaccgtcaagctttcgacatttagctaacctgaaatcttgttgtcgctgtgggttttccg  2498400                 <---------ANAC58                                         --------->HSFC1(2)                 <---------ANAC58     ------->GAMYB                       <---------HSFC1(2)              <----------DOF2      --------->MYB52(1)                    <---------GLK1(1)       --------->MYB46(3)    ---------->DOF2                     <----------DOF2     <---------WOX13(1)      --------->SPL7      --------->LBD16                   <----------DOF2 --------->TOE2(3)    --------->TOE1(2)    --------->ANAC46                  <---------DAG2--------->GLK1(1) --------->GLK1(2)      <---------LBD16            <-----------ARR10  --------->HSFB2a(2)------->TEIL ---->LBD16   --------------------->WRI1          <---------CCA1(2) <---------LBD16--------->ATHB12   aagaatcgaacgactgctttcgtttctccgcaaaagctaaccgagtcgcttcgtctcttcgcctttgctcttcggaaacctccattgattgaatctgaga  2498500                                                                                             --------                                                                                      <-----------HVH21                                                                                    ------->MYC4                                                                                    <-------MYC2   <-                                                                                    <-------MYC3   --                                                                                    ------->MYC3   <-                                                                                    ------->MYC2   --                                                                                    <-------MYC4   --                                                                                   --------->ANAC55(2)                                                                                   <---------TGA1a<--                                                                                   --------->ANAC46<-                                                                                   <---------ANAC55(2)                                                                                   --------->TGA1a---                                                                                   ==================                                                                                   <---------O2   <--                                                                               --------->AtMYB61  <-- <---------ANAC58                      --------->ANAC58             --------->ALFIN1-------->ABF1 --- <---------ANAC58    --------->ARR11(3)--------->ANAC46            <---------PCF2<---------ALFIN1 --- <---------ANAC46    <---------ARR11(3)--------->ANAC58          <---------MYB46(3)--------->O2  ----   gttgtgtgaagaagtgaagagaagacattttgaattttgaaacgcaagagcatgaacaagtgaagagcgggtgcgaagaaaccacacgtgtcaactacac  2498600         <---------YAB1        <---------AHL20(2)       --------->AHL20(2)       --------->YAB1     <------MYB46(1) ->ZAT14--------->AHL20(2)<------MYB83 ------MYC2              --------->MYB52(2) ----->MYC2              --------->MYB59               ----------------->AGL3 ------MYC4              --------->MYB46(2)         --------->GLK1(1) ----->MYC4              --------------->AtSPL8     <---------GLK1(1)                     --------->ARR11(3) ----->MYC3              --------------->AtSPL3    --------->ARR14(2)            <---------HSFB2a(2) -------O2             --------->ARR14(2)          <---------ARR14(2)      --------------->AGL15 ------MYC3            <---------ARR14(2)        --------->LBD16           <---------------AGL15 ------>TGA1a --------->AHL20(2)               <---------LBD16         --------->ZAT14    <---------ARR14(2) =======bZIP_bZIP      <---------MYB52(1)  --------->YAB1            --------------->AtSPL8 -------ANAC55(2)<---------ARR14(2)       <---------ATHB12   <---------AHL20(2)  --------->HSFB2a(2) -------TGA1a <---------AHL20(2)         ------>MYB83  ------------>CBF<---------ZAT14    --------->ARR14(2) ------>ANAC55(2)--------->ARR14(2)      ------>MYB46(1)--------------->AGL15    <---------HSFC1(1) ------>O2   --------->AHL20(2)         --------->WOX13(1)  --------->AHL20(2)   --------->HSFC1(1) -------->OsbHLH66 <---------LBD16    ------------>CBF ====================================MADS_MADS   acgtgtgaattaaaattaaaatccggttcggtaccaaaaaaccaatcaaaccggatttccaattttataacagagtactatttcgagaaacaaatcttga  2498700               --------->YAB1          ------------>CBF                           --------->AHL20(2)       --------->At4g35610             <---------At4g35610       <---------At4g35610             --------->At4g35610 <---------YAB1  --------->ANAC58    --------->ARR11(3)           ----------->GT1           <-----------GT1     ----  --------->ANAC58    <---------ARR11(3)         ---------->DOF2  <----------DOF2          <-------TEIL   actcaagtcatctacaatcttcaagacctctctataaactcagcatcgtagaaaagaaaatatgatttctttgaaaattttacattataaagattcatga  2498800                       <-----------GT1     ===================HOX2a_HOX2a                           <                   <----------DOF2         ------>ZmHOX2a(2)                               <---------GLK1(1)                  --------->TOE2(3)      --------->ARR11(3)  --------->At4g35610          --------->ARR14(2)                ---------->ID1       <----------DOF2   <------ZmHOX2a(1)--------->MYB46(3)<---------ARR14(2) --->TEIL      <-----------GT1 <-----------GT1<----------DOF2<---------At4g35610    --------->ARR11(3)   accaaaaacaaaccatttttcctttaaaccaattcacaactttgatctctttctcaaggacttagcagccttcaacgacttgtgaagatgtggatttgct  2498900                                                                  --------->AtMYB61                                                                 <---------ATHB12                                                                 <---------MYB55(2)                                                                 --------->MYB46(3)                                                                --------->ANAC58                                                                ------>MYB46(1)                                                                -------->P                                                                ------>MYB83                                                                --------->ANAC58                                                              <---------MYB55(2)                                                              --------->MYB46(3)                                                              --------->AtMYB61                                                              --------->DEAR3(1)                                                              <---------MYB111(1)           <---------At4g35610                                <---------MYB111(2)  <----------DOF2        <<<<<<<<<TBF1         --------->ARR11(3)              <---------MYB46(2)<-----------GT1 --------->ARR14(2)     <-------GAMYB                    --------->ANAC58     <----------DOF2 ------->TEIL    --------->ARR11(3)                      --------->ANAC58  <-----------GT1<---------ALFIN1 <---------ARR14(2)    <-----------RAV1(1)             ---------->DOF2  <----------DOF2  ------>ZmHOX2a(1) ---------CCA1(2)<---------ARR11(3)          --------->MYB52(1)--------->MYB55(1)  <---------DAG2   ctgaatcttcttcttctgagatgttctgttgttatcttgaagagagataacagtttcaaaagcaccaaccaatgctttaactttacttttcctcacttct  2499000  Previous    Next  AGI:  At5g07810.1    Description:  SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein. similar to SNF2 domain-containing protein / helicase domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G48310.1); similar to hypothetical protein OsJ_024021 [Oryza sativa (japonica cultivar-group)] (GB:EAZ40538.1); similar to hypothetical protein OsI_025822 [Oryza sativa (indica cultivar-group)] (GB:EAZ04590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64481.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014 Range:  from: 2491284    to: 2498485    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g07820.1    Description:  similar to chromosome scaffold protein-related [Arabidopsis thaliana] (TAIR:AT5G61260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15046.1); contains InterPro domain Calmodulin-binding, plant (InterPro:IPR012417) Range:  from: 2498750    to: 2501210    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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