Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    --------->ANAC46                                   <---------ARR14(2)          --------->ARR14(2)   --------->At4g35610                                   --------->GLK1(2)       --------->YAB1         <---------GLK1(2)                 --------------->AGL15                --------->AHL20(2) --------->ZAT14             <--------P  ----------->GT1   <---------ZAT2  <-----------GT1     --------->HSFB2a(2) <-          <---------TOE2(3)        --------->ARR14(2) <---------AHL20(2) <---------ZAT18           <- -------->ANAC58 --------->HSFB2a(2)      --------->ANAC58 <---------ICU4--------->ZAT18     <------- -------->ANAC58 <---------HSFB2a(2)      --------->ANAC58<---------ATHB12     <---------HSFB2a(2)<--   tccagcaaaatataggttgctagaaaatggaaacacaaatctgcaagctctgaaattttaatcactatccccaagtgcaatccagaagctcaaataaacc  2466200                                              --------->KAN4(2)                                              --------->ARR11(3)                                              --------->ARR14(2)                                              <---------ARR11(3)                                              <---------ARR14(2)                                             <----------TaMYB80                                             <---------KAN4(1)                                             --------->GLK1(1)                                             <---------GLK1(1)                                             --------->KAN4(1)                                             <---------HSFB2a(1)                                             --------->HSFB2a(1)     ---------->DOF2      --------->TOE2(3) ---------->TaMYB80                           ------>ZmHOX2a(1) --------DAG2          ----------->RAV1(1) <---------GLK1(2)                      <---------YAB1    - ---------DOF2 --------->YAB1          ---------->DOF2                        <---------GLK1(2)     < ----GT1       -------->ATHB1  <---------TOE2(3)     ---------->DOF2    ---------->DOF2 --------->TOE2(3) -------DAG2  <---------YAB1 ---------->DOF2<---------KAN4(2)--------->AHL20(2)--------->GLK1(2)  <--   ccttttccaaagaactatcattgtccaacattaaaggaaacaaaagaatatcccacaaagctataaattgtcttcaaagagattctgattcctaaaacct  2466300              <---------At4g35610                                            <---------GLK1(2)      ---------->DOF2                                                     <---------HSFB2a(2) -------->AHL20(2)              <---------ATHB12--------->YAB1            --------->HSFB2a(2) ---------AHL20(2)          --------->MYB46(3) <---------ATHB12         ------>MYB46(1) --------DOF2 --------->At4g35610            --------->WOX13(1)         ------>MYB83                -   ctttaattcaaagttgagctcaaatgagcatccactaattctcatcccaatcaaactgccaaaaaccctataccatccagaagctcgtcgtagcagtttt  2466400                                                                                                   --                                                                        <---------ICU4            ---                                         ----------->RAV1(1)  <---------GLK1(2)                ======                                      --------->LBD16   <---------YAB1  --------->YAB1         ======                <-----------GT1     <---------LBD16  <---------------AGL15       ----------->GT1-----           <---------CCA1(2)      <---------ARR14(2) --------------->AGL15   ---------->DOF2   <-----        --------->LBD16           --------->ARR14(2) <----------DOF2 --------->YAB1    ---------->DOF2 ----->ZmHOX2a(2)            --------->YAB1         <-----------------AGL3<---------YAB1--------->DAG2   gatcccaatgcgcatatatcaccgattgtaagaataaatccggcaacaatttcatctttttatagatactttgatcatgaaaagagagaaaaaggaagga  2466500                                       <---------HSFB2a(2)                                     <------ZmHOX2a(2)                                    --------->ARR14(2)                           --------->HSFB2a(2)                           <---------HSFB2a(2)                        ------>ZmHOX2a(2)     --------->TOE2(3) <------ZmHOX2a(2)                                                         ----     --------->YAB1   <---------ARR11(3)                                               --------->ATERF1(1)     --------->TOE1(3)--------->ARR14(3)            <---------HSFB2a(2)  ------>NtERF2 <------NtERF2    <---------YAB1    --------->ARR11(3)--------->LBD16             ---------->DOF2    <xxxxxxxxxxxxx ------->ATHB12      <---------GLK1(1)<---------LBD16           --------->ANAC58      <---------At4g35610 ------>ICU4         --------->GLK1(1)------>ZmHOX2a(2)         --------->ANAC58      <XXXXXXXXXXXXXX ==============================HOX2a_HOX2a    <----------DOF2  <---------LBD16    <---------DEAR3(1) =============================HOX2a_HOX2a     <---------DAG2  --------->MYB52(1)  --------->ALFIN1 ------>GT1  --------->ANAC58       <---------ARR14(2)       ----------->HVH21   *TSS --------->At4g35610 -ZmHOX2a(1) --------->ANAC58  --------->GLK1(2)    --------->HSFB2a(2)--------->At4g35610       ====   gtgattaccataaacacgctcagagatctcgagaagccgatccggaggctttttgtagaagaagcgacggaacagcgccatgggatggcgctgtctctcc  2466600                                                                                 --------->ARR14(2)                                                                                 --------->ARR14(3)                                                                                 <---------ARR11(3)                                                                                 <---------GLK1(2)             --------->DEAR3(2)                                                  --------->ARR11(3)             --------->MYB46(3)                                                  <---------ARR14(3)       <------ZmHOX2a(2)                 <------ZmHOX2a(2)            <---------MYB59      --------->AGP1                    <---------ARR11(3)         <---------WRKY18(1)      <---------ARR14(2)                --------->ARR11(3)        ----------->HVH21      --------->ARR14(2)           --------->ANAC58               --------->WRKY45<------ZmHOX2a(2)     --------->At4g35610           --------->ANAC58               --------->WRKY12--------->GLK1(1)  <------ZmHOX2a(2)              --------->MYB46(3)             <---------At4g35610 <-----------HVH21              -------->P --------->KAN4(2)    <-------GAMYB    <---------ARR14(2) -->ZmHOX2a(1)                  ------>MYB46(1)                <---------ANAC46  --------->AGP1 xxxxxxsmallRNA(se3)            ------>MYB83            ------------>CBF   --------->ANAC46    ------ XXXXXXMIR391<------------AtMYB77---------->DOF2  <------------CBF--------->WRKY38(1)       XXXXXXXXX =============HOX2a_HOX2a    --------->MYB46(3)  --------->ATHB12<---------MYB52(1)------>ZmHOX2a(2)   tccgatcagatccaaaccgtcgatttagtaaaccaacaagcagatcattctcgattgctccaattccgttgacctaaaccccagatccccttcttccccc  2466700                                                                                              -------                --------->TOE1(3)                                                             <------       <-----------HVH21                                                                     <-------      --------->ANAC46                                                            <---------MYB59      --------->At4g35610                                                   ---------->DOF2--------->LBD16      <---------At4g35610                                             <---------ANAC58    --------->HSFB2a(2) --->LBD16      --------->TOE2(3)       --------->DAG2                ----------->GT1     <---------HSFB2a(2) XXXXXXXXXXXX>MIR830*                  ---------->DOF2                <---------ANAC58   <---------LBD16   aaaaattcaggtcacaaaccctaatttctcacccctagctaaaaagttgacaaatttcgcttaattacaagagcgtgataaagacccaattcccagaatt  2466800                                               --------->ANAC46                             <---------------AGL15                            ----------------->AGL2                            <-----------------AGL2                            ----------------->AGL3                            <-----------------AGL3                            <-----------------AGL1                            <-----------------AG                            ----------------->AG                            ----------------->AGL1    <-----------GT1      --------->YAB1        --------->ANAC58 -->GLK1(1)             <---------ATHB12       --------->ANAC58       <---------ALFIN1    <---------- ---GLK1(1)     ------>NtERF2--------------->AGL15             ---------->DOF2        --------->GLK1(2) --GLK1(2)   ------>NtERF2 XXXXXXXXXXXXXXXXXXXX>MIR826      --------->YAB1  ---------->DOF2   ccttcttcacctctctgcctccaccaataatccaattttggaaacaaaaacgcaagtcgtaatcacaaagccaaaccccaaagttgagaatttttcaaac  2466900                                                     --------->TOE1(2)                                        --------->HSFC1(2)                                        --------->HSFB2a(1)                      --------->YAB1                                        <---------HSFB2a(1)        --------->HSFC1(2)                                        <---------HSFC1(2)         --------->HSFB2a(1)                                       <---------ARR11(1)          <---------HSFB2a(1)                                       --------->GLK1(2)          <---------ARR14(2)                                       ------->TEIL<---------ATHB12<---------HSFC1(2)                                       --------->ARR14(2)         --------->ARR14(2)                                       <-----------ARR10          <---------ARR11(3)               --               ------->TEIL            <---------ARR14(2)         --------->ARR11(3)     ----------->GT1   <---------ANAC58                   <---------CCA1(2)           --------->GLK1(2)  --------->DAG2<-   <---------ANAC58  ------>ZmHOX2a(2)<---------ARR14(1)         <---------GLK1(2)  ---------->DOF2-- -GT1       <---------ATHB12          <---------GLK1(2)<---------TOE1(2)        <---------ATHB12-----   tagtttcgttccaaatgaatcgatctctatgtacaatgccgaatcttctctcaatcgtgggaacaaagaatcttcgaagctaatcaaaaagttgttaaaa  2467000                                                                ------------------------>ANAC81     ---------->DOF2                                   --------->At4g35610                 --------->MYB52(1)    --------->AHL20(2)                                 ----------->GT1              ----------->GT1 ------->AHL20(1)                                      <---------At4g35610         ------------------ --------AHL20(2)                        <---------At4g35610   --------->DAG2    <---------ARR14(2) ------->AHL20(2)                        --------->At4g35610  ---------->DOF2--------->At4g35610 ---->YAB1                      ----------->HVH21    <-----------RAV1(2)   <------ZmHOX2a(1)  -------   ataaaataaaagagggagatagagagagaaggaagtgacagtgagatgaagaatttcaggtgaaaaaaggagaagaaggagcagaaatgaaaaaaacgaa  2467100  Previous    Next  AGI:  At5g07740.1    Description:  pseudogene, formin homology 2 (FH2) domain-containing protein, contains formin homology 2 domain, Pfam:PF02128; blastp match of 59% identity and 3.3e-175 P-value to GP|27817931|dbj|BAC55695.1||AP004275 P0453E05.6 {Oryza sativa (japonica cultivar-group)} Range:  from: 2458630    to: 2466581    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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