Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <-----                                                                               <---------YAB1  <-----                   ---------->DOF2                                            <---------AHL20(1) <---   <---------AHL20(1)                                                        <---------ICU4   -------   <---------ARR11(3)          ---------->DOF2                              --------->ICU4    <------   --------->AHL20(1)    ---------->DOF2                                    <---------YAB1    <------ ----ANAC58   --------->At5g28300          --------->ATHB12    --------->TOE1(3)            <-------- ----ANAC58  ------->GAMYB <----------ID1<----------DOF2       --------->TOE2(3)            <--------   tacaaaatatttcaacggtgagaaagagaaagacaaagtgaagctttattggaaaatataaaaaaccttgaaaatttcattattttttgtttttaagatt  2422400 ----RVE1(1) ----CCA1(1) ------AHL20(2)                        <---------ANAC58                                     --------- -->ARR11(3)                           <---------ANAC58                 ----------->GT1  --------->DAG2 ---ARR11(3)                  ---------->ID1                          ---------->DOF2   ---------->DOF2 ---GLK1(2)          <---------YAB1   --------------->AtSPL8       --------->ANAC58--------->ANAC58 -TOE2(3)           <-----------GT1  <-----------GT1               --------->ANAC58--------->ANAC58 -TOE1(3)       <---------GLK1(2)------>ZmHOX2a(1)       --------->AHL20(2)        ----------->GT1 --   ttttttttggaaatttcagaattttcatttttgtcctattttcgttccctaaaaaaaaaaaaaatatgaacgaaaagaaattagcaagaaaaaagtgtaa  2422500            --------->YAB1                                                             --------->HSFB2a(1)            -------->HAHB4                                                             <---------HSFB2a(1)           --------->ICU4                                                              <---------HSFC1(2)           <---------YAB1                                                              --------->HSFC1(2)      <------ZmHOX2a(1)               --------->YAB1                            ----------->GT1 -->GT1  --------->YAB1   <----------DOF2                                    --------->DAG2 ------->MYB52(1)   <---------YAB1 ------>ZmHOX2a(1)                        ---------->DOF2   aaaacagaggataatgatagttattcttctttttttcctataaacatcagagatagaaactacatacaactggacaaaaaaagggtagaaatttcttaag  2422600                                                                                                <----                                                                                                <----                                                                                <----------ID1  -----                                    ------->GAMYB                <------------CBF       <---------ICU4                                   <---------MYB52(2)        --------->TOE2(3) --------->DAG2   -----                                   --------->MYB46(3)  ----------->TBP        ---------->DOF2  ------                                <----------ID1       <----------DOF2         ---------->DOF2   ------        <----------DOF2  ---------->DOF2         <---------GLK1(2)<---------WOX13(1)   <---------ATHB51   aaacaaattactttgagtttttatttccaaagaaacaacaaaccatttgcaaattctttaaaaacttaattgaatttcgaaaaggccaaattatggcacg  2422700                                          <---------SPL7                                   <---------AHL20(2)                         <-------MYC3    --------->ANAC55(2)                  --------->SPL7   --------->AHL20(2)     <---------AHL20(1)  ------->MYC3    <---------ANAC58                ------>NtERF2     --------->AHL20(2)  <-------MYC2    <---------ANAC58                --------->LBD16     <---------AHL20(2)  ------->MYC2    <---------ANAC55(2)            --------->ANAC46 <---------AHL20(2)     --------->ANAC58--------------->AtSPL8         <---------LBD16 ---MYC3        <---------SPL7     ----------->TBP                    >>>>>>>>>>E2Fb ---MYC2       <---------ANAC58  ----------->TBP<---------MYB52(1)   <-----------GT1 -->MYC2       <---------ANAC58 <---------AHL20(2)                  <-----------GT1 -->MYC3<---------YAB1  --------->ANAC58--------------->AtSPL3  <---------AHL20(2) --->ANAC58    <---------ANAC46--------->AHL20(2)             <----------DOF2               <-------- --->ANAC58   ---------->ID1  <---------YAB1--------->SPL7  ------>ZmHOX2a(1)   --------->AHL20(2)   tttttattttatttttgtcgtatggcacgtttattatataaatccgtaccattagttatctcctcttttatttcccgcccattaaaacatccaactttct  2422800                                                                                           <---------STY1(2)                                                                                           --------->STY1(2)                            ----------->HVH21                                        ------->GAMYB                         --------->DAG2                                         =====================                   <---------------AGL15                 ----------->HVH21      <------ZmHOX2a(2)                   --------->TOE2(3)                     <---------ETT(2)       =====================                   --------->TOE1(3)                  --------->AtMYB61       ------->GAMYB--------->ZAT2             --------->ANAC46                        --------->MYB46(3)================HOX2a_HOX2a             --------->ANAC58                      xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->MYB46(3)             --------->ANAC58                      ------>NtERF2       ------>ZmHOX2a(1)   <---------ZAT2     <---------At4g35610---------->DOF2           <---------ETT(2)   <---------ICU4 <---------MYB52(2) --DOF2 <---------------AtSPL3              ------->TEIL --------->ETT(2)    --------->MYB46(3) -----   tctgttcttctgagtacgaaaccctaaaaagtgacagagatggatgaacatggcgaccatcgacagagtaatcctttcaacgatcaacaaactagctcgg  2422900            --------->ARR14(1)           <---------ARR14(2)           <---------GLK1(2)          <------ZmHOX2a(1)      ------>ZmHOX2a(1)     --------->TOE2(3) ============HOX2a_HOX2a           ----------->RAV1(1)                                     --------->ANAC58 ================HOX2a_HOX2a   <-------MYC3                    <-------GAMYB               --------->ANAC58 ------>GT1--------->ARR14(2)  ------->MYC3                   <---------MYB46(3)         --------->MYB52(1)   gtaaaatccttaggattcgccttgagaatttcatgtgccacagtaatctcgagattgagtttggcgattgggtcaatttcatcactggtcaaaacggaag  2423000                                                                          --------------->AGL15                                                                          <---------------AGL15                                                                    <---------MYB46(3)                                                                   --------->ALFIN1                                                              <---------LBD16            --------->TOE2(3)      <---------ARR14(2)        --------->ZAT2         <-----------GT1      <---------ANAC46               <---------ZAT2     <----------DOF2   <----------DOF2                   <---------HSFB2a(2)  <-----------ARR10    <---------------AGL15   <---------ANAC58 --------->LBD16  <---------ARR11(3)   <---------DAG2          <---------ANAC58<---------ANAC46              <-------  --------->GLK1(2)<-----------GT1 --------->ARR14(2)    --------->HSFB2a(2)     ----------->GT1  --------->ARR11(3)   ===================================================================MADS_MADS   taagtatcttttcacctaaatttagcttttttgagtgaattcgcttatggcttcgttttctcgagccgggtgtttgctattttcagtaaataagtctttt  2423100                                                                                         --------->WOX13(1)                                                                                     <---------WRKY18(1)                                                                                   <---------WOX13(1)                                                                                 <--------ATHB1                                                           <---------AHL20(2)    --------->ATHB12                                                           --------->AHL20(2)   <---------YAB1                                                       <--------HAHB4           --------->ICU4  <----------DOF2                   <---------YAB1     --------->ATHB12        <---------WOX13(1)---- ---DOF2                     <---------TOE2(2)        <---------ATHB12      <---------YAB1 <---------ATHB12   taggctttgattttggtttgtgctcaaaacccatgtttatgaatactcaattttgaatcatttaaatttgttgaatttctgaatgattgaccaattaaga  2423200                                                                          <---------ANAC58                                                               <----------DOF2                                       --------->ALFIN1      <---------ZAT14         <---------ANAC58                                     <---------At4g35610     --------->ZAT18    <---------AtLEC2    -                                   <-----------RAV1(2)       --------->ZAT14<----------DOF2      <--- <---------ARR14(2)       <---------ANAC58               <-----------GT1  <---------ANAC58       ---- --------->ARR14(2)       <---------ANAC46       <---------ZAT18     <-----------RAV1(1)  <---------- ----->At4g35610          <---------ANAC58       --------->ZAT18     --------->ALFIN1<---------ANAC58   gcggaaatgagttttggagagtgtgttttcgtggttttcaggtggtaagagtgcgatattgactgctctatgtgttgcctttggatgtcgagccagggga  2423300  Previous    Next  AGI:  At5g07660.1    Description:  structural maintenance of chromosomes (SMC) family protein. similar to MIM (HYPERSENSITIVE TO MMS, IRRADIATION AND MMC), ATP binding [Arabidopsis thaliana] (TAIR:AT5G61460.1); similar to hypothetical protein OsJ_027271 [Oryza sativa (japonica cultivar-group)] (GB:EAZ43788.1); similar to hypothetical protein OsI_029391 [Oryza sativa (indica cultivar-group)] (GB:EAZ08159.1); similar to SMC6 protein [Oryza sativa] (GB:CAD59413.1); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain RecF/RecN/SMC protein, N-terminal; (InterPro:IPR003395); contains InterPro domain SMCs flexible hinge; (InterPro:I Range:  from: 2422840    to: 2429913    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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