Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            ----------->RAV1(2)    <------ZmHOX2a(2)                        --------->RVE1(1)       --------->ARR11(3)                              -----                 ------>ZmHOX2a(2)          <---------ANAC46                                   ------                <------ZmHOX2a(2)         <---------MYB46(3)            --------->WOX13(1)    <------ ---->GT1      --------->ARR14(2)        --------->ALFIN1              ---------->DOF2    <-------TEIL --->GT1       <---------ARR14(2)    ---------->DOF2                  <---------ATHB12<---------TOE1(2)   aaaactttcaactcttggatccaaaaatacctggcgattcaaagtggtgggatcatgcctagaccagaacaaatcaagcagagactcataggtgcaatcg  2364000                       ------->GAMYB                       --------->TOE2(2)                       --------->TOE1(2)                                                   <---------ARR14(2)                   --------->MYB46(3)           --------->MYB46(3)                         ------->TEIL   <------ZmHOX2a(2)  --------->MYB46(3)   <---------HSFB2a(2)     <------ZmHOX2a(1)       --------->ARR14(2)  <---------ARR11(3) -------->P            --------->HSFB2a(2)   <---------TOE2(3)    <---------ANAC58  --------->ARR11(3)------->GAMYB<---------ANAC58          --------->LBD16            <---------ANAC46 ---->TOE2(3)      <---------MYB111(2) <---------SPL7    <---------LBD16              <---------ANAC58 --->YAB1     --------->TOE1(3)  <---------ANAC58    --------->ARR11(3)            <---------MYB52(1) ---ATHB12  ------->TEIL         <---------ANAC46    <---------ARR11(3)  --------->ETT(2) <---------CCA1(2)   ttaagatcatattgaaccctaacaacctccgaatggcctgtggtaccagaacaaacatctccgtatgaaggattgtctacggtcccttgggtgtatccag  2364100                                                                                              -------                                                                                             <-------                                                                                            <--------                                                                                           <---------DEAR3(1)                                                                                           --------->DEAR3(1)                                                                                          <------NtERF2                                                                                          --------->ATERF1(1)                                                                                         <---------ATERF1(1)                                                                                         ------>NtERF2                                                                                         <---------RAP2.6(1)                                                                                         <---------RRTF1(1)                                                                                         <---------RAP2.3(1)                                                                                         <---------ERF1                                                                                        <---------DEAR3(1)                                                                                        --------->DEAR3(1)                                                                                       --------->RAP2.3(1)                                            --------->ANAC58                           --------->RRTF1(1)                                            --------->ANAC58                           --------->RAP2.6(1)                                            --------->ANAC46                           --------->ATERF1(1)                                           ------>NtERF2                               --------->ERF1                                          <---------ALFIN1    <-----------------AG     <------NtERF2                                       --------->ANAC58       ----------------->AGL1   --------->DEAR4(2)                                       --------->ANAC58       <-----------------AGL1  ------>NtERF2                                    --------->At4g35610     --------->ARR14(2)        <---------ATERF1(1)                                    <---------At4g35610    <---------At4g35610        --------->LBD16                                    <---------ZAT2         --------->At4g35610       --------->LBD16                                    --------->ZAT2         <---------ZAT2            <---------DEAR3(1)                --------->LBD16--------->ANAC58            --------->ZAT2            --------->ANAC46               <---------LBD16 --------->ANAC46     --------->HSFC1(2)              <---------LBD16              ----------->RAV1(2)  ------>NtERF2    <---------HSFC1(2)              --------->LBD16        <-----------HVH21      --------->ANAC58 --------->LBD16                <---------GLK1(2)   cctcggtctgagtcacccctgggactctctgaaacgccagctcgacaccccagaaacatccagctccgaattgggcaaactgattccccggcgccggtgt  2364200                                <-------TEIL                                ------>ZmHOX2a(2)                               <------ZmHOX2a(2)                              <---------ARR14(2)                             =================================HOX2a_HOX2a        --------->ATHB12                             <------ZmHOX2a(1)                              <---------KAN4(2)                            --------->HSFC1(2)                           <---------ANAC58                            <---------HSFB2a(1)                          <---------ANAC58                            <---------HSFC1(2)                        <---------MYB52(1)                     ------>ZmHOX2a(2)                           --------->GLK1(2)        --------->HSFB2a(1)   <-----------TGA1  ===============HOX2a_HOX2a                  --------->ARR14(2)       --------->HSFC1(2)   <-----------HVH21<------ZmHOX2a(2)         <---------ZAT18--------->ANAC58   <-------TEIL -->ALFIN1          ================HOX2a_HOX2a              --------->ANAC58   <---------YAB1  ----- --MYB52(1)<---------LBD16  --------->HSFB2a(1)<---------ALFIN1  <---------ARR14(2)       <---------HSFB2a(1) -DEAR3(2) ----------->RAV1(2)--------->ARR14(2)       ------>ZmHOX2a(2) <---------ANAC46 <---------HSFC1(2)   gtcatcgtcatttccctgagcgatcggagaaggatccatattggtttgcccacttgatcccaaacccaatctgttgagtatgttcattgagaaatttcta  2364300                                                         <---------MYB52(1)                                                         --------->At5g28300                                                        --------->LBD16                                                        ----------->GT1                                                       --------->HSFB2a(2)                                                       <---------HSFB2a(2)                                              =====================================bZIP_DOF                                              <---------bZIP60(2)                                              --------->ANAC55(2)                                              <---------ANAC58              <---------AtMYB61                                              <---------ANAC55(2)          *TSS                                              <---------O2              <----------DOF2                                              --------->O2             <---------ANAC46                     <------ZmHOX2a(1)        <---------TGA1a    <---------ANAC58                  <-     --------->CCA1(2)         --------->TOE1(2)      <---------LBD16  <---------ANAC58          ----    <---------ARR11(3)        --------->At4g35610   <---------SPL7     <---------ANAC58  --------->ATHB12    --------->ARR11(3)       --------->GLK1(2)<---------ANAC55(1)<---------ANAC46       <---------YAB1 <---------------------WRI1--------->CCA1(2)  <---------ANAC58   <---------ANAC58     --------->YAB1- ----->DOF2     <------ZmHOX2a(1)             --------->TGA1a<---------MYB52(2)      <------ZmHOX2a(2)   aagagagatatgaacagaggagaggagagagatgctgcgaaactcaagacgtgtcttccggtaactagcgtttgcgttttggtagcgatcacgattagat  2364400                                                        --------->At5g28300                                                       ----------->GT1                                                    --------->MYB52(1)                                                  <---------WRKY38(1)        ----------->GT1                                                 --------->WRKY18(1)     ------>MYB83                                                <-----------HVH21        ------>MYB46(1)                                               ----------->GT1         <---------MYB52(2)--------->TOE1(3)                                             <-------TEIL              --------->DEAR3(1)--------->TOE2(3)      --------->TOE2(3)                     --------->ARR14(1)        --------->ANAC58   <---------MYB59      ------->GAMYB                         --------->CCA1(2)         --------->ANAC58   ------------     --------->MYB46(3)                    --------->ARR11(1)         --------->ANAC46  <---------ANAC55(2) --------ZAT6                  --------->At4g35610<---------WRKY12 --------->ZAT14      ------------- ------->GT1<----------DOF2  --------->YAB1--------->ARR14(2)      <---------ZAT14<---------AHL20(2) -------->YAB1         --------->At5g28300 <---------ARR14(2)  <-----------GT1   --------->AHL20(2)   agtgataaccacaacttttaatcgcagtgaatcatctgtgatatagatacggtcaaacggtgaatttactacaccgaaccagataaaattacctaaaata  2364500                                 <---------------------WRI1                             --------->LBD16                                                       --                            --------->ANAC46                          --------->GLK1(2)   <---------YAB1     --------->GLK1(1)     <---------LBD16                           <---------GLK1(2)  <-----------GT1     <---------GLK1(1)   <-----------GT1                         ---------->DOF2       <---------AHL20(2) --->AGL15      <---------AHL20(2)                              <---------WRKY45       <---------YAB1 ---->AG   <---------MYB52(1)<---------At4g35610           --------->ZAT14      <----------DOF2>>>>>>   taaaccgatatcggttattttttgaattttccgctatcgaatcgaacaaatacaaattcaatgtagtcaaagaatctaattcctttttttttattataca  2364600       --------->YAB1                                                                 ------->GAMYB     <---------WOX13(1)                                                              <---------MYB52(2)   --------->ATHB12                     --------->ICU4                 --------->ANAC58            <- <---------WOX13(1)   --------->MYB52(1)<---------YAB1                 --------->ANAC58            <- ------->ATHB12    --------->YAB1  --------->ANAC46                  --------->MYB52(1) ------->TEIL >>>EIN3     <----------DOF2     <---------AtLEC2       --------->At4g35610        <-----------GT1 --   ttgattgattaataactttaagcataacgttgtttacatgtcatttttgtaagaaatttgctgagcaaacaaaacgaaatttgtataacgaaccaaaaat  2364700                                                                            --------->ICU4           <------MYB46(1)                                                  --------->ARR14(2)           <------MYB83                                          <---------YAB1          --------->MYB59                                      --------->YAB1     <---------AHL20(2)                                       <---------ATHB12 --------TOE1(3)                                 <---------AHL20(2)         <---------ARR14(2) --------TOE2(3)              --------->YAB1 --------->MYB46(3)<---------ICU4  <---------YAB1 ------->MYB59     ------->TEIL  ---------->DOF2 --------->AHL20(2)    ----------->GT1      <-------TEIL   ttaggttttaatttggtcatgaactcaaacaaaaataaagaaattcaacaaataaatactctcactcattatagggcaaatatgaatacacatatacatg  2364800                                                                                                   <-                                                                                                   <-                                                                                                  ===                                                                                                  <--                                                                                                -----                                                                                               ------                                                            --------->AHL20(2)                -------                                                         --------->TOE2(3)                    <------                                                --------->ANAC58                              <------                                                --------->ANAC58                             --------        --------->YAB1                <---------YAB1     --------->TOE1(3)                   ------>MYB46(1)       <---------YAB1      --------->At4g35610  ----------->GT1                              ------>MYB83    --------------->AGL15--------->YAB1        --------->DAG2                              <---------MYB55(2)    --------->ICU4   <---------AHL20(2)       ---------->DOF2                              --------->MYB46(3)   aaaacacttattatagatagtttttaatcagcaaaaccatatgaatggaaaagcaaaaaccataaaatatacaaaaattcccatggtacccctccaaccg  2364900  Previous    Next  AGI:  At5g07470.1    Description:  PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3); peptide-methionine-(S)-S-oxide reductase. similar to PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1), peptide-methionine-(S)-S-oxide reductase [Arabidopsis thaliana] (TAIR:AT5G61640.1); similar to peptide methionine sulfoxide reductase [Arabidopsis arenosa] (GB:AAR15486.1); contains InterPro domain Methionine sulphoxide reductase A; (InterPro:IPR002569) Range:  from: 2362571    to: 2364375    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g07475.1    Description:  plastocyanin-like domain-containing protein. similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G27200.1); similar to Cu2+ plastocyanin-like [Arabidopsis arenosa] (GB:AAR15487.1); contains InterPro domain Cupredoxin (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) Range:  from: 2364746    to: 2365606    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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