Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        ---------->DOF2                                   --------->AHL20(2)                                   --------->YAB1                                  <---------ATHB12                               --------->ANAC58 -------TOE2(3)             --------->ANAC46                                     --------->ANAC46 <-- -----AHL20(2)            <-----------GT1    <---------ICU4              <---------ARR11(3)  ------->TEIL ---->AHL20(2)          <-----------GT1      --------->YAB1     ---------->DOF2  --------->ANAC58 ---   aatgaaatgaacaaaacgagaacaattttcactccaattaaaaagaatcataacttgtttttctaacaaagacgagaacttacaagtcatccatgaactt  2358900                                                                                                -----                                                                                                -----                                                                                                -----                                                                                              -------                                                                                              <------                                                                                             --------                                                                                             <-------                                                                                          --------->AHL20(2)                                                                                         <---------AHL20(1)                                                                                 <---------ARR14(2)                                                                                 --------->ARR14(2)                                                                              --------->DEAR3(2)-----                                                                        <---------AtLEC2--------->AHL20(2)                       <---------YAB1                  ----------->RAV1(1)   ------->TEIL--------->AHL20(1) -------At4g35610   <---------YAB1             --------->ATHB12    <----------DOF2 ----------------->AGL3 ------>At4g35610   --------->ICU4         <------ZmHOX2a(1)   <---------RAP2.6(2)<------ZmHOX2a(2)   agcagagaccaagacgctggtgatgatgagtctatggacattagaggaatcaatgggcaacaatggctgcttttgtatgaaccgatccaaatatatatac  2359000                                                                                                    <                                                                                                   <-                                                                                                   --                                                                                                   --                                           ------>ZmHOX2a(1)                                       <-                                       --------->ARR14(2)                                         <--                                       --------->KAN4(2)                                          --- ---->ANAC55(2)                        <---------ARR14(2)                           --------->ZAT14<- ---->ANAC58                           <---------ARR11(3)                     <-----------HVH21  ---- ---->ANAC58                 <---------ZAT18                                 <------MYB83 ---------->DOF2 -->CCA1(2)                 <---------ANAC58                                 <------MYB46(1) -------- -----GT1--------->ZAT6     <---------ANAC58                                <---------AtMYB61-------- ->ARR14(2)                --------------->AtSPL8            <---------WOX13(1)     <---------ZAT14-- --ARR14(2)      --------->At4g35610   --------->ARR11(3)  --------->ATHB12 --------->MYB59  <------- ---->ANAC46    <---------DEAR3(1)    <---------GLK1(1)   <---------YAB1<---------HSFB2a(1)  <-------   gcgactatgtaacacgagtcgctgcaatctgcgtacttgaatatcctctccatatagcttctgattgatatagaaggtttggtcactgcattgaaagctg  2359100                                 ------>ZmHOX2a(2)         <---------ZAT18       <---------ARR11(3)   ------>ZmHOX2a(1)           --------->ARR14(2)   =====================================HOX2a_HOX2a   ====================================HOX2a_HOX2a ------>ZmHOX2a(2)             <---------ARR14(2) ------ZmHOX2a(2)       <---------ATERF1(1) --------ARR14(2)       <---------DEAR3(2) ------->ARR14(2)      <---------DEAR3(1) ------->ARR11(3)     --------->SPL7 --------GLK1(2)      --------->RAP2.6(3)                 --------->HSFB2a(2) -------GLK1(1)      --------->MYB52(1)               <----------DOF2         <---------MYB52(1) ------>GLK1(1)     ----------->HVH21          ------>NtERF2          --------->bZIP60(1) --------ARR11(3)   <---------SPL7            ----------->HVH21       <---------bZIP60(1) ------->ARR10     --------->DEAR3(2)         <---------ETT(1)        <---------bZIP60(2)           - ->ZAT2  --------->At4g35610   --------->ARR11(3) ------>NtERF2    ----------->HVH21           <----- ->At4g35610       --------->MYB46(3) <---------MYB52(1)  <---------HSFB2a(2)<---------RAP2.6(3) ---- ------->AGP1    --------->MYB52(1)  <---------SPL7 --------------->AGL15    <-------GAMYB     <----- --ZAT2  <---------At4g35610 ----------->ARR10--------->ANAC46   --------->At4g35610           ------ --At4g35610   ----------->HVH21<------ZmHOX2a(2)<---------ALFIN1--------->CCA1(2)         <---------AtLEC2   agatcctcttgtgctccctgaacggacggctcagatcgtcgttcgtctccgacaccctttgtagaagagatgacatcgccgttatgacatttggcatgat  2359200       <---------MYB46(3)     <---------MYB52(1)                       <<<<<<<<<<<<<<<<<LFY                                  < -------->ANAC46                             --------->ANAC58                                       < ------ARR10                                 --------->ANAC58            <------MYB46(1)           <- -->ZmHOX2a(2)                               --------->ANAC46            <------MYB83           <---- ----ARR11(3)           --------->YAB1  <---------YAB1               --------->ALFIN1     <---------TOE2(3) --->ARR11(3)    ------>ZmHOX2a(2)  --------->WOX13(1)             <---------ANAC46       <---------YAB1   ctcagccattggttcttgatcgtgaatcatcttctgatcaatctgataagccattggatttagagagagatgtgtaggttattacatagattaagtttgt  2359300                                                                               <------------CBF                                                                              <---------ICU4                                                                              --------->ATHB12                                                                             --------->ICU4                                                                             <---------YAB1                                                                           -------->HAHB4                                                                           --------->ATHB12       ---                            <---------ANAC58                               <---------ICU4        <---           <----------DOF2  <---------ANAC58                               --------->YAB1        <---         *TSS               <---------ANAC46                              <---------YAB1         ----         ------>ZmHOX2a(1)<---------ANAC46                          <---------YAB1 <---------ANAC58 ------MYB83        ---------->ID1         --------->AHL20(2)       --------->AtLEC2         <------- ------MYB46(1) <---------AtLEC2  --------->AHL20(2)            <-----------HVH21  <---------ANAC58 --------AtMYB61<---------ANAC58  <-----------TBP           ------->TEIL  <---------ATHB12   -------- -------RAV1(1) <---------ANAC58<-----------TBP      <------ZmHOX2a(1)    --------->ICU4 --------->ZAT6   gttggtgtctcctcttttgcctgtcgttttgggtgtttatatagaataaatagtaggacatgtatgtgtcatgctaatgattattgggttctcactacag  2359400      <---------ATHB12 <---------AHL20(2) ------>GLK1(2)       <---------YAB1 ------ARR14(2)       <---------WOX13(1) ------GLK1(2)     <---------YAB1         --------->AHL20(2) ----->ARR14(2) <----------DOF2           <---------AHL20(2) --ZAT14   <---------ARR11(3)            --------->AHL20(2)                          --------->ARR11(3) ->ZAT14<---------GLK1(2)      <---------AHL20(2)         --------->MYB46(3)        --------->YAB1   attctccaaagattatctcttttgattaatggttttattgcaattttattctaagctctaaccactaaatttggaccatttggctaacatattggagaca  2359500                                                                   <---------RVE1(1)                                                                   <---------CCA1(1)                                         --------->AHL20(2)       --------->ARR11(3)                            --------->ANAC55(2)                   <---------ARR14(2)                            <---------ANAC55(2)      <---------------AGL15                            <------MYB46(1)  <---------AHL20(2)   <---------ARR11(3)                            <------MYB83 <---------AHL20(2) <---------TOE2(3)                   --------->DAG2   <---------YAB1   --------------->AGL15                  ---------->DOF2--------->ICU4     ----------------->AGL3               --------->YAB1 <--------P--------->AHL20(2)---------->DOF2                         ---          <---------TOE2(3)--------->MYB59   --------->AHL20(2) ----------->ARR10     --------->ARR11(3)   caatgtttgttttagattaataaagtcattaggtaagtattatttaattaaaaacccttataaaggaagatatttttcacatatataagatttgtaaaca  2359600                                                      <---------At4g35610                                                      --------->At4g35610                                                   <-----------HVH21                                                  --------->TGA1a                                                  <---------TGA1a                                                  --------->bZIP60(1)                                                  <---------O2                                                  <---------bZIP60(2)                                                  <---------bZIP60(1)                                                  --------->O2                                                  --------->ANAC46                                       <---------ANAC58           ----------->ARR10       ---------->DOF2                                    ---------->ID1===================================================bZIP_DOF                                  <-----------RAV1(1)<---------DEAR3(1)        --------->ZAT14        ---------->DOF2  <-------GAMYB <---------ANAC58       ----------->GT1  <---------ZAT14      <---------YAB1     ===================================MYC_MYB            --------->At4g35610  - ------->DOF2       <---------ARR14(2) <---------ANAC46       <---------MYB46(3)      --------->TOE2(3)   gaaagcttatgaaagtaatgcatattgggttgaattttgttgcttataactcacgtcgctgaattggttagaacttcgaactgcagaacattaaaagaaa  2359700                                                                --------->YAB1                                                            --------->DAG2                                                           ---------->DOF2                                                        --------->AHL20(2)                <----------DOF2                                                        <---------AHL20(2)            --------->REM1(1)                                                     ------>MYB83                    <-------TEIL             <---------ZAT6                          ------>MYB46(1)                <-----------GT1 ---------->GT1                                    <---------MYB59               --------->MYB52(2)   aaatgtgaataagtagtgttaccatgaagaatttctgtattcgaggtttatgaccaaattaaaaagtcataacttagaagcattagttacatcttttttg  2359800  Previous    Next  AGI:  At5g07450.1    Description:  CYCP4;3 (cyclin p4;3); cyclin-dependent protein kinase. Identical to Cyclin-U4-2 (CYCU4-2) [Arabidopsis Thaliana] (GB:Q9LY16); similar to CYCP4,2 (CYCLIN P4,2), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT5G61650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70506.1); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Cyclin-related 2 (InterPro:IPR013922); contains InterPro domain Cyclin-like (InterPro:IPR011028); contains InterPro domain Negative regulatory factor PREG (InterPro:IPR012389) Range:  from: 2358353    to: 2359309    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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