Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <---------ANAC46                                                                   ----------->GT1                                                                <---------TGA1a                                                                <---------ANAC46                                                                <---------bZIP60(2)                                                                --------->O2                                                                <---------O2                                                                --------->TGA1a                                                            ------>ZmHOX2a(2)                                    --------->ANAC46        --------->DEAR3(2)                                  <---------ALFIN1        --------->ARR14(2)                                ==========================================MYC_MYB                                --------->AtMYB61         <---------ARR14(2)                                <---------ALFIN1         <------ZmHOX2a(1) <---------AHL20(2)          <---------------AGL15 ------->GAMYB  <----------ID1----------->HVH21<---------YAB1          --------------->AGL15--------->MYB46(3)    --------->TOE1(2)     <---------YAB1           < -------->ANAC58              -------->P<---------At4g35610<------ZmHOX2a(2)--------->YAB1          < -------->ANAC58--------->YAB1============================================MYC_MYB                <---   gcaaaccatttacttcaataagaaaggttagcaaccacactcagcaaatgggacacataggatccgacgtggtttatattatagtagtctgatatagtag  2237200                                                         <----------DOF2                                                <------MYB46(1)                          ---------->DOF2                                                <------MYB83                      --------->ARR11(3)                                               <---------TOE2(2)                  <---------ARR11(3)     ----------->GT1                           <---------TOE1(2)                 --------->YAB1     < ---------WRKY12 <----------DOF2            <---------ANAC58                   <---------WOX13(1) <-- ---------WRKY38(1)                         <---------ANAC46        --------->GLK1(2) ----------->GT1 ------ZAT6    ---------->ID1               <---------ANAC58 <-----------GT1<---------YAB1        <--   agtcaatgggtatatttgtctttttcaaagactcagttccattgaagcgtaggttacttctttaaacaagactctgttttgaatgatattgtaaagttaa  2237300                                                <---------At4g35610                                                --------->At4g35610                                            <-----------HVH21                                         <---------ANAC58                                         --------->O2                                         --------->TGA1a                                         <---------O2                                         <---------bZIP60(2)                                         <---------TGA1a                                         <---------ANAC46                                         <---------ANAC58                                         <---------ANAC55(1)                                         --------->ANAC55(2)                                         <---------ANAC55(2)                                        ----------->bZIP910(1)           ========================================bZIP_DOF           <----------DOF2              <-----------------------TaNAC69(2)            <---------MYB59         ---------->ID1                 ----------->STF1                        --------->YAB1     <---------MYB52(1)                <---------TGA2(2)                        --------->TOE2(3)  <-------TEIL            xxxxxxxxxxxxxxxx>smallRNA(s)                          --------->TOE1(3) ---------SPL7     <------ZmHOX2a(1)  ----------->TGA1                       --------->ANAC46   <---- -------------AtSPL3  =============================bZIP_DOF             --------->ETT(2)------>MYB46(1) -------------AtSPL8  ---------->DOF2 ----------->HVH21                 <---------ETT(2)------>MYB83<   ggggtacgtttgtctttttcaggacaaagcgagaccatagatgacgtgtcaactgctaattttcaaaaactcggtctacaaaccataaccaaacttattt  2237400           --------->LBD16    <---------AHL20(2)                 --------->At4g35610    <---------ICU4             <----------DOF2    -------->ATHB1          <-----------GT1    <--------HAHB4     <---------YAB1  <---------At4g35610            <---------AtMYB61    --------->AHL20(2) --------->AHL20(2)                            <--------P    --------->ATHB51   <---------AHL20(2)                          <-----------RAV1(1)             --   --------->ICU4     --------->AHL20(2)                   <-------MYC2                         <----   <---------ATHB51   --------->AHL20(1)                   ------->MYC2                         <----   <---------ATHB12   <---------AHL20(1)         <---------WOX13(1)--------->ALFIN1             ----- -----AHL20(2)   --------->AHL20(2)   ------->TEIL         <-------MYC3<------MYB46(1)          ----- ---------AHL20(2) --------->AHL20(2)<---------AtLEC2      ------->MYC3<------MYB83           <------   attcaattatttccgtcaaaaaaatataattttctttttgcatctcaatggattgattccatgtgccaagtgttggtgttcatgagaaaattagtcgcag  2237500                                          --------->O2        ------->GAMYB                     ==============================MYC_MYB        ============================================MYC_MYB       <---------MYB52(2)    <---------AHL20(2)       --------->MYB46(3)    --------->AHL20(2)    <----------ID1      <---------AHL20(2)=====================bZIP_DOF ------->At4g35610      <---------YAB1    <---------TGA1a      ------->TEIL             --------->ANAC58 -----ZAT2            --------->YAB1      <---------O2         *TSS                     --------->ANAC58 -----At4g35610     <-----------TBP       --------->TGA1a      -------->P               --------->ANAC46 ---->At4g35610 --------->ANAC58          =====================bZIP_DOF       --------->YAB1 ---->ZAT2 --------->YAB1   <---------AHL20(2)          <----------DOF2    <---------ICU4 -----RAV1(2)   --------->ANAC58    --------->ZAT6  <----------DOF2       ------>ZmHOX2a(1)        --   ctgatgacaacaaacatcaagcatttataatttatataacactcacgagagcctctttctttatctacctcgtctcctaatcacaaacacacacaaatct  2237600                                                                  --------->ANAC58                                                                  --------->ANAC58                                                                >>>>>>>>>>AtWER             <--------                                                              --------->ANAC58              ---------                                                              --------->ANAC55(2)           <--------                                                              --------->ANAC58  <XXXXXXXXXXXXXXXXXXXXMIR172A/B           <---------bZIP60(2)                                <---------ANAC46  --------->At4g35610           <---------ANAC58                                   <---------ANAC55(2)          <---------GLK1(2)           <---------ANAC58                           <---------ARR14(2)        <XXXXXXXXXXXXXXXXXXXXMIR172E ----------->GT1                  <---------CCA1(2)   --------->ARR14(2)    --------->AtMYB61<-------TEIL ------->ZAT14         <----------DOF2     <----------DOF2 <---------MYB52(1)   <XXXXXXXXXXXXXXXXXXXXMIR172C/D   ctgaagtaaaatgacgttcccttctctttctgtctcatttctcttctttgccttcatattcgttacgcatgcattcgacctcagcatcatccaggttctt  2237700                                                                                                    <         <----------DOF2                                                                --------->ANAC58         <---------DAG2                                                                 --------->ANAC58      <-----------GT1                                                                   --------->ANAC46 -ARR14(2)                      <---------ARR14(2)                                  ----------->RAV1(1) >ARR14(2)                      --------->ARR14(2)<---------CCA1(2)    --------->ARR11(3)         --- -ARR11(3)           ---------->DOF2 <---------MYB52(1)   ---------->ID1          <-------TEIL  -----   cttgttttctactttctggctaacaaagtaaccagaaccggttttctcacttgtatatttgtttttttgagaaaatcatgtagatgcaacagggaacatg  2237800          <-------GAMYB         --------->MYB55(2)         --------->MYB52(2)         <---------MYB46(3)        <---------AtMYB61        --------->ALFIN1                                                           --------->At5g28300     --------->ANAC46                                   <------ZmHOX2a(2)          --------->DOF5.7(2)  <---------ZAT14                                      --------->ARR14(2)         ----------->GT1  <---------REM1(2)                                    <---------ARR14(2)       <------NtERF2  --------->ZAT14                   --------->LBD16   --------->At4g35610      ------>NtERF2   <-----  --------->SPL7                  <---------LBD16    ----------->ARR10        --------->DEAR3(1)  <-- ---------SPL7               <----------DOF2       <------ZmHOX2a(2)         --------->DEAR3(2)------ ------------>AtSPL3   --------->At4g35610       <---------GLK1(1)          ------>NtERF2<---------TOE2(3) ------------->SPL14   --------->ZAT2    <---------ETT(2)                 --------->ATERF1(1)  ------   tccgtacacggtggttgtcatgacaagctgtctttctccggagtcgacaagagatcagatcagcattgtttttggcgatgccgacggtaacaaggttaag  2237900                                                                             <---------ZAT14                                                                             --------->ZAT18                                                                             <---------At4g35610                                                                             --------->At4g35610                                                                           <---------ZAT18                                                                           --------->ZAT18                                                                         ------->MYC2       <---------AHL20(2)                                                <-------MYC2     <---------RVE1(1)                                                   <-------MYC3             ---    <---------GLK1(2)               <---------ARR11(3)                <---------ANAC58       <-------    <---------ARR11(3)           <---------DDF1                       <---------ANAC46       <-------    --------->ARR11(3)          <---------ETT(2)                      <---------AtLEC2    <---------- ----ANAC55(2)                  --------->ETT(2)                      <---------ANAC58  <---------MYB52(2) ---------GT1               --------->MYB59              <---------ANAC46------->MYC3  --------->ANAC58 ----->GT1                 --------->ZAT14        ---------->DOF2 <---------ANAC58     --------->ANAC46 --->ANAC55(2)            <---------MYB52(1)   <----------DOF2    <---------ANAC58     --------->ANAC58   taactagatttttttgtatatagttccagttaagtcgacatcttatttgctttaaagtggtttagataccttgcatgtgtgctcagtgcaagtaacttta  2238000                      --------->RVE1(1)                      --------->CCA1(1)                ----------->GT1                --------->TOE2(3)           <---------AHL20(2)         <---------ANAC46                      <-----------RAV1(2)     <     --------->AHL20(2)<---------ARR11(3)                                <------ZmHOX2a(1)       <--- ------>YAB1   ----------->GT1<---------MYB52(1)                 <------MYB83                <------- ---DOF2  --------->YAB1     <-------GAMYB                       <------MYB46(1)       <------------- --DAG2  --------->AHL20(2) <-----------RAV1(1)                 --------->MYB59       <---------LBD16 -GT1<---------AHL20(2)--------->ARR11(3)      ------->TEIL     --------->MYB46(2) --------->ALFIN1 -   tagtgatttaaataaaaatgttaaatatctctgttgttttaggtgtatgcaccgaaactagggggtttggtaagaggaccagggggtttggggaagtgtt  2238100  Previous    Next  AGI:  At5g07190.1    Description:  ATS3 (ARABIDOPSIS THALIANA SEED GENE 3). similar to embryo-specific protein-related [Arabidopsis thaliana] (TAIR:AT5G62210.1); similar to PIP2 [Capsicum annuum] (GB:ABF72433.1); contains InterPro domain Embryo-specific 3 (InterPro:IPR010417); contains InterPro domain Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976) Range:  from: 2237563    to: 2238663    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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