Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              <------                                                                  --------->ANAC58           --------                                                                  --------->ANAC58           --------                                                                <------ZmHOX2a(1)         <---------ZAT2                                                         <---------ICU4                   --------->ZAT2                                                         -------->ATHB1                  --------->ANAC46           --------->ANAC58                              --------->ATHB12          <---------ANAC58     <----------ID1                             --------->At4g35610                <---------ANAC58<- ---------->DOF2  <---------ANAC58              <---------At4g35610  <-----------RAV1(2) --------->ANAC58 -------AGL1      <---------ANAC58      ----------->GT1 <---------YAB1         <---------ANAC58   <-- -AtSPL8   --------->ANAC58          ---------->DOF2    --------->ICU4  <------ZmHOX2a(1)--------->ANAC58 >AtSPL8 ---------->DOF2      ---------->DOF2   --------->ZAT2<---------TOE2(3)<---------ANAC58   <--   cggcaaaggaacaaagccatgggtgtctcttccaaagggcaaaggtattaagctgaccatcattgaggaagccaggaagagacttgcttcccagcaagct  2203800  ---------->DOF2 -------ANAC58 -->At4g35610 ---ZAT2 -->ZAT2 ---At4g35610 ->ANAC58                          <---------ARR11(1) ->ANAC58 <---------At4g35610     <---------CCA1(2)   <---------ANAC46                            <-- ---------DOF2           <---------ICU4       <---------GLK1(2)                            <---------MYB46(3) -------ANAC46        --------->YAB1  <----------DOF2 <---------ANAC58                  <-----------RAV1(1) -------ANAC58 <----------DOF2    <---------MYB52(1)  <---------ANAC58          <----------DOF2   ---   gcttgaaagtccaactgctttgaatcatcaagacccgtttcttttacagactcgctgcttgtctcagtttgtgagtctatttcttttcttatgttgttgg  2203900                                                                                                 <---                                                                                                <----                                                                                                -----                                                                                             <------MYB83                                                                                             <------MYB46(1)                                                                                            <--------                                                                                           <---------MYB52(1)                                                                                          >>>>>>>>>TAC1                                <---------DAG2                                        ------------>AtMYB77                         <---------ZAT14          <---------ANAC46                 <---------At4g35610                         --------->ZAT14         <---------AtMYB61          --------->AHL20(2)  <----              --------->AHL20(2)<----------DOF2<---------AtLEC2       <---------At5g28300 <-------GAMYB -------GLK1(1)     --------->At4g35610  <---------YAB1              <-----------GT1 ----------->HVH21 ------>GLK1(1)     <---------At4g35610  --------->ICU4            <----------DOF2 --------->At4g35610   atttcaaaacccatcaaaaaatagctgagtagtgctttttgtaatgtttgtatggtggattttttggtgatttaccgtttaaatcagatgacagttggtc  2204000                                                                           <----------DOF2                                                                     <---------ANAC58       <---------ANAC58                                              <---------ANAC58       <---------ANAC58                                            <---------AHL20(2)   <----------DOF2                                            <---------AHL20(2)               <----- ------ALFIN1                   <----------DOF2               <---------YAB1                   ------ -----ZAT18              <----------DOF2                    <---------CCA1(1)         <---------HSFB2a(2) ---->ZAT18             <---------ANAC58                   --------->ARR11(3)  <---------ANAC55(2) -MYB46(3)              <---------ANAC58       --------->CCA1(2)<---------AHL20(2)    --------->HSFB2a(2) -----WRKY38(1)     <----------DOF2    <---------MYB46(3)  <---------ARR11(3)  --------->ANAC55(2)   cactcctttgcttagtcttctcctttgctttgcgctattagttgttgagagatgagtaatagatattattttcttggcattaagtaatctagaagaagac  2204100                                <------NtERF2                               ------>NtERF2                               <---------RAP2.6(3)                              ------->GAMYB --------->DAG2                              --------->RAP2.3(3)                              --------->RAP2.6(2)                              --------->DEAR3(1)                              --------->RAP2.3(2)                             --------->ATERF1(1)           ---------->DOF2   --------->ERF1---------->DOF2         ------>ZmHOX2a(1)   --------->RAP2.3(1)                                        <-----------HVH21       ----------->RAV1(2)  <---------At4g35610                            --------->ANAC58   <------ZmHOX2a(1)        --------->At4g35610                            --------->ANAC58       <-- ----ARR11(3)     <---------ANAC46     --------->ANAC46                    --------->ANAC46   ------- --->ARR11(3)     ----------->GT1<---------DAG2            ---------->ID1<---------ALFIN1     -------   ctcaaggactcctgaaagtgatgtgaattcagccgccttacacaaaaaagtcaaacattttggtgttttgaatacacacgcttcacacttggtcacaagc  2204200                  <---------DAG2                  <----------DOF2             <---------ANAC58             <---------ANAC46                                                                      --         <------------CBF                                                                         ---        --------->ATHB51                                                                          ---        <---------ICU4 <---------ANAC58                                    >>>>>>>>>TBF1          <--       <---------YAB1  <---------ANAC46                     <---------AHL20(2)                    ---       <---------AHL20(2)                                  --------->AHL20(1)                     ---     --------->YAB1    <---------ANAC58                    <---------AHL20(1)         <--------------  <----------DOF2<---------ANAC58   ------>ZmHOX2a(1)      <---------AHL20(2)    >>>>>>>>>TBF1    --- -------CCA1(2)  <---------ANAC58   <----------DOF2        --------->AHL20(2) >>>>>>>>>TBF1---------- -->ANAC58   <---------ANAC58 <---------HSFC1(2)     --------->ANAC55(1)>>>>>>>>>TBF1 --------------- -->ANAC58<---------WOX13(1)  --------->HSFC1(2) *TSS----------->GT1<------ZmHOX2a(1) <--------------   ttatcttttataattgcttgcttttccttggaaacatcctttccttctatccaactcgtaatttaatataggaagaagaagaagaagaagagtacctcat  2204300 ------->TOE2(3)                                                     --------->ABI4(1) ------>ANAC58                                                       --------->At4g35610 ------>ANAC46                                                       <---------At4g35610 -------ANAC55(2)                                                   --------->DEAR3(1) ------>ANAC55(1)                                                <---------ALFIN1 ------>ANAC58                                                  ----------->HVH21 -AtSPL3                     ---------->DOF2                   <-----------TGA1                ------ ------>ANAC55(2)    <---------YAB1                            <-----------HVH21         <----------DOF2 ------->AGL1     <----------DOF2                             --------->DEAR3(1)         <---------DAG2 >AtSPL8        <----------DOF2---------->DOF2             <---------ALFIN1         ------>ZmHOX2a(1) -AtSPL8 --------->ATHB12------>ZmHOX2a(2)--------->LBD16----------->RAV1(1) <----------DOF2   <-----   acgtaaaccattgatgggctcttttgatcgccaaagagctgttccgaaattcaaaacagcaacaccgtcaccgctccctctttctccttcgccttacttc  2204400                        ------>NtERF2                       --------->RAP2.3(3)                       --------->DREB2C(2)                       --------->DEAR3(1)                      --------->ORA47(2)                      --------->RAP2.3(1)                      <------NtERF2                              <-----------ARR10        ------>ZmHOX2a(1)      --------->HSFB2a(2)               <---------ARR14(2)                <-      --------->ZAT2 --------->LBD16                             <---------ARR11(1)               >>>      <---------ZAT2 ------>NtERF2                               --------->ARR14(2)               >>>      ----------->RAV1(2)  <----------DOF2                       ------->TEIL                    ----     ------>NtERF2   <---------ATERF1(1)                        <---------CCA1(2)                ---- --->ZAT14          --------->ANAC46                     ------>ZmHOX2a(1)     ------>ZmHOX2a(1)<---- ----ZAT14         <---------LBD16       ------>ZmHOX2a(1)      <---------ARR14(1) <---------TOE1(2)   actatgcctcctggccttactcccgccgactttctcgactctcctcttctcttcacttcctccaacgtatctatctatctcctccaacgtttcaaactat  2204500         ------>ZmHOX2a(1)      ---------->ID1  <---------ANAC58  <---------ANAC58 --------WOX13(1)                                ---------->ID1 >>>>>>ARR2                                --------->ATHB12                                 ========= >>>>>>ARR1                            <-------TEIL                                         ------>ZmHOX2a(2) ----->YAB1                           --------->ARR11(3)                 <---------CCA1(2)<---------ARR11(3) ----->ATHB12                      <---------TOE1(3)                   --------->YAB1     --------->ARR11(3) -----YAB1<---------CCA1(2)        <---------TOE2(3)           <<<<<<<<<TBF1          <----------DOF2   gattgtttgtccttatcttggaatattgaaagaattcaaggttcttgatttgtccatttcccttcttcttctctcatatcatcttcttctttgatcttga  2204600                     --------->ANAC58                     ----------->HVH21                     --------->ANAC46                     --------->ANAC58                    --------->SPL7                   ------>ZmHOX2a(1)                  --------->TOE1(2)                  --------->TOE2(2)              --------->ATERF1(1)             <---------ATERF1(1)             ------>NtERF2             <---------RAP2.6(3)            <---------ANAC58            <---------ANAC58         <-----------GT1                                                   <---------WOX13(1)     --------->ARR11(3)         --------->GLK1(1)             --------->MYB52(1)     --------->ARR14(2)      <-------TEIL                  --------->YAB1--------->ATHB12     <---------GLK1(2)    --------->ANAC58       <---------ZAT14   <---------MYB52(1)     <---------ARR14(2)   --------->ANAC58       --------->ZAT14<------------MYB.PH3(1) =========================HOX2a_HOX2a   <---------ZAT18 --------->YAB1<---------At4g35610  --------->AHL20(2)   aatcacagattttgccgtctcctacgacaggcacatttccagcgcaatctctgaactataacaataacggtttgctcattgacaaaaatgaaatcaaata  2204700  Previous    Next  AGI:  At5g07090.1    Description:  40S ribosomal protein S4 (RPS4B). Identical to 40S ribosomal protein S4-2 (RPS4B) [Arabidopsis Thaliana] (GB:P49204;GB:Q42346;GB:Q9FL39;GB:Q9LYQ6); similar to 40S ribosomal protein S4 (RPS4D) [Arabidopsis thaliana] (TAIR:AT5G58420.1); similar to 40S ribosomal S4 protein [Glycine max] (GB:AAM93434.1); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Ribosomal protein S4e, N-terminal and RNA-binding (InterPro:IPR013844); contains InterPro domain Ribosomal protein S4e, N-terminal (InterPro:IPR013843); contains InterPro domain Ribosomal protein S4e, central (InterPro:IPR013845); contains InterPro domain KOW Range:  from: 2202381    to: 2204078    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g07100.1    Description:  WRKY26 (WRKY DNA-binding protein 26); transcription factor. Identical to Probable WRKY transcription factor 26 (WRKY26) [Arabidopsis Thaliana] (GB:Q9C5T3;GB:Q8GYK8;GB:Q9LYQ5); similar to WRKY33 (WRKY DNA-binding protein 33), transcription factor [Arabidopsis thaliana] (TAIR:AT2G38470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21360.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) Range:  from: 2204249    to: 2205812    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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