Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->ARR14(2)                        --------->GLK1(2)                        <---------ARR14(2)                       <---------CCA1(2)    --------->ANAC58                   ----------------->AGL1   --------->ANAC58                  ------>NtERF2             --------->ANAC46                         --------->At4g35610                 --------->DEAR3(1) <---------WRKY45                        <---------AHL20(2)              --------->ANAC58      <---------WRKY12                        --------->AHL20(2)     <- ------ZAT6   --------->ANAC46      <---------WRKY38(1)            <-------TEIL    <-----------RAV1(2) -->ALFIN1    --------->ANAC58     --------->WRKY18(1)---------->DOF2      --------->AHL20(2)     <--   tgttagagtgctagtcacgctgcccaaatctgtaatggtcaacttcaaggaacacataaatcccctaaatacatgaaattaataagcaggtgaatgtaat  2202000                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                          -----------                                                                                          --------->ANAC58                                                                                        =============                                                                              <-----------------AGL1            --------->AHL20(2)                              <---------At4g35610<-----------GT1 ------         <----------DOF2 <------ZmHOX2a(1)          <----------DOF2           <-----------------AG  < --------At5g28300   ---------->DOF2           ---------->DOF2          <---------TOE2(3) --------->ANAC58 ---------GT1     <---------YAB1              <---------AHL20(2)<---------MYB52(1)      ---------->DOF2   tcacagtgtttctttaaaatatgaaaaggacctcatgcgattgtatatttaaagcttttgtttgctgtttgtttaagtttttcacatttggaaagtaata  2202100                            <---------At4g35610                            --------->At4g35610                        <-----------HVH21                        <-----------TGA1                       --------->ANAC58                       --------->O2                       --------->ANAC46                       --------->ANAC58                       <---------bZIP60(1)                       <<<<<<<<<<AtbZIP1                       --------->bZIP60(2)                       <---------TGA1a                       --------->TGA1a                       =================================bZIP_DOF                       <---------O2                       --------->bZIP60(1)                      ------>NtERF2                  --------->ANAC46            <---------TOE2(3) ----------->RAV1(1)           --------->YAB1--------->TGA2(2)    --------->ANAC46 <---------ALFIN1 ---->AHL20(2)    --------->ANAC58                      ------>NtERF2 -----AHL20(1)    <---------bZIP60(1)                  --------->ANAC58 -----AHL20(2)    --------->ANAC58 <---------KAN4(1)   --------->ANAC46 ---->AHL20(1)    --------->bZIP60(1)                  --------->ANAC58 >GT1     <---------ATHB51 --------->ANAC58          <---------ALFIN1   <---------ZAT18 ================================bZIP_DOF         --------->PCF2   ------>ZmHOX2a(1) --->ICU4 <---------ATHB12 --------->ANAC58  ---------->DOF2 <---------KAN4(1) -----------GT1 <-----------GT1  --------->YAB1   --------->ANAC46--------->TOE2(3)   <-----------GT1   ttttacaaaccaataatgtaacgccacgtcagcaacaatattccttctaaagaccccacgccaatattccttagtggagtttttaaaatcactgtttcat  2202200                              <----------ID1                  ----------->RAV1(1)         <----------DOF2 <---------AHL20(2)                 --------->REM1(1)   ---------->DOF2          <---------ICU4 --------->ICU4             <---------At4g35610  <------NtERF2  --------->MYB52(2)      --------->At5g28300             --------->At4g35610 --------->RAP2.6(2)     <---------MYB59----------->GT1            --   ctaaaaactgattttagctacaacaaaatataaggccgaaaaagaatgctttagttgggcctaaatatttcatgctgtaaaaatgggcctatctaaataa  2202300                                                                     <---------MYB52(1)                                                                    <-------GAMYB                                                                    --------->At5g28300                                                                   ----------->GT1                                                                   <---------ANAC46                                                                  <------NtERF2                                                                  --------->RAP2.3(1)                                                                 <---------RAP2.3(1)    <---------AHL20(1)                                           ------>NtERF2    --------->AHL20(2)                                           <---------ATERF1(1)    --------->AHL20(1)                                          <---------DEAR3(1)<-----------RAV1(2)    <---------AHL20(2)                                         --------->ZAT18   *TSS             <--   <---------ATHB12        <---------TOE2(3)                   <---------ABI4(2)--------->TOE2(3) ---   --------->AHL20(2) --------->ZAT6                <---------AHL20(2)        ------>NtERF2       --- ---------->CBF     ----------->RAV1(1)   <----------DOF2 ---------->DOF2    --------->DEAR3(1)   <--   gcccaataaatttatgcgagaacaacactagggttttagtttttcttttgatatataatgtaaagggcgccgttaatcgcagcctcagtggaaacagagc  2202400                                                                                                -----                                                                                                -----                                        --------------->AGL15                             --------->WRKY18(1)      --------->YAB1                    <---------------AGL15                            <-----------HVH21 -------ZAT2                           <-----------------AGL2                       --------->ARR11(3) ------>At4g35610                      ----------------->AGL3                       <---------ARR14(2) ------>ZAT2<-------TEIL               <-----------------AG                        <---------CCA1(2) -------At4g35610           ---------->ID1                                    ----------->GT1   <----   agctgcaaacatggttcgtcttctcaatttctcgtttttctcccaattttggtttagtctgtgtctatgtctcttctgtttagttatatctggtcatgga  2202500            <----------DOF2                                               ------->TEIL           <---------ANAC58                                             <---------SPL7           <---------ANAC58                                           --------------->AtSPL3     --------->YAB1                                                   --------------->AtSPL8     --------->ATHB51                                              --------->ETT(2)     <---------ICU4                                                <---------ETT(2)     --------->ATHB12                                              --------->WRKY38(1)    --------->ICU4                                               --------->LBD16    <---------ATHB51                                            <---------ANAC58    <---------ATHB12           <------ZmHOX2a(1)                <---------ANAC46 <---------AHL20(2)  --------->MYB52(2)                         <---------ANAC58 ---->ARR14(2)     <--------P  <<<<<<<<<<<<<<<<<LFY        <---------ANAC58 ---->ARR11(3)     <---------MYB52(1)               <-----------GT1--------->WRKY12 -----ARR14(2)   <---------MYB46(3)     ------>NtERF2      <---------ANAC58   tattcaattatgggcgttttggttagtttcttaggacaatggcgactctagttttctcgtttcatgccgtagaccgtacctgtaaatgtttcagactgcg  2202600                                     ------->TEIL                                   <---------ZAT14                                   --------->ZAT18                                   --------->ZAT14                             <---------WOX13(1)  --                                   <---------ZAT18                           --------->ATHB12     <--                        <----------DOF2<----------DOF2                    --------------------->WRI1          <---------ANAC58        <---------ZAT6                        <---------AHL20(2) <---------MYB52(1)          <---------ANAC58 --------->HSFB2a(2)                       <---------DAG2       <-------GAMYB        <-----------GT1 --------->GLK1(2)                            <----------DOF2     <---------MYB46(3)       <<<<<<<<<<GT-3b<---------At4g35610             <-----------HVH21 <---------YAB1   <-----------RAV1(1)   atgttgtatttttcttgacaattgagcttctgggtagtgtacttttgactaggctctgtcaaatgtgataactttttattgattgaatcgtctgttgttt  2202700                                                                                                  <--                                                                                                 <---                            --------->ANAC58        ---------->DOF2                 <---------WOX13(1)     --------->AHL20(2)     --------->ANAC46     --------->At4g35610               <---------ANAC58  <----------DOF2           --------->ANAC58  --------->HSFC1(2)                   <---------ANAC58 -------->ID1        --------->ICU4           <---------HSFC1(2)          --------->ATHB12       ---- ---------GT1     <---------YAB1    <------ZmHOX2a(1)                 ------>ZmHOX2a(1)          <---   tgaccttttatatatcaaatgtgattatgcaggcaagaggattgaagaagcatctaaagaggctcaatgctcctaagcattggatgcttgacaaacttgg  2202800          --------->MYB52(2)        <---------MYB52(1) ------>NtERF2                                                                               -------- -------MYB46(3)          --------->WOX13(1)                                                 <------- ------DEAR3(1)    ---------->ID1                                                          --------->ICU4 ----->ALFIN1  <---------ANAC58                  <---------ICU4                            <---------YAB1 ------AtMYB61 <---------ANAC58                 --------->AHL20(2)  --------->ICU4      <------ZmHOX2a(2)   tggtgccttcgtaagttgtttgtctcatcaatcttgtgtttttaagacaattcattacatttgttctgtaatgttgatgtgtttgtatcgatcattttta  2202900  Previous    Next  AGI:  At5g07080.1    Description:  transferase family protein. similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G47170.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83736.1); contains InterPro domain Transferase (InterPro:IPR003480) Range:  from: 2200333    to: 2202111    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g07090.1    Description:  40S ribosomal protein S4 (RPS4B). Identical to 40S ribosomal protein S4-2 (RPS4B) [Arabidopsis Thaliana] (GB:P49204;GB:Q42346;GB:Q9FL39;GB:Q9LYQ6); similar to 40S ribosomal protein S4 (RPS4D) [Arabidopsis thaliana] (TAIR:AT5G58420.1); similar to 40S ribosomal S4 protein [Glycine max] (GB:AAM93434.1); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Ribosomal protein S4e, N-terminal and RNA-binding (InterPro:IPR013844); contains InterPro domain Ribosomal protein S4e, N-terminal (InterPro:IPR013843); contains InterPro domain Ribosomal protein S4e, central (InterPro:IPR013845); contains InterPro domain KOW Range:  from: 2202381    to: 2204078    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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