Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  <---------AHL20(2)                                                               <---------AHL20(1)                                                               --------->AHL20(1)                                                               --------->AHL20(2)             ------>ZmHOX2a(1)                                 <---------ARR11(3)     <---------ANAC58                                          <---------AHL20(2)     <---------ANAC58                                          --------->ARR11(3)    <-----------RAV1(1)                                       --------->AHL20(2)    <---------AtMYB61                   <---------CCA1(2)   --------->AHL20(2)    --------->ALFIN1                ------>MYB83      <---------YAB1  <---------ANAC58                  ------>MYB46(1)   <---------ANAC55(2)                  --------->ANAC55(2)  <-----------RAV1(1)      --------->ANAC58           <----------ID1         --------->AHL20(2)  <---------ANAC46         --------->ANAC58      <------ZmHOX2a(1)           --------->YAB1<---------ANAC55(2)  <---------ANAC58       <---------AtLEC2  --------->ZAT6 --------->AHL20(2)<---------ATHB12    -----   gtttgtgtggtgctcctcttgaaatttgcaagtaaaccaagcttatctctaggattacgaaaaaatatatttgagtcaataatatagacaaatatgtaat  2133500                                                                                             --------                                                                                             --------                --------->AHL20(2)                                                          ---------                <---------AHL20(2)                                                         ------>MYB46(1)             --------->YAB1                                                                -------->P         --------->ATHB12    ------>MYB46(1)                                               ------>MYB83        --------->ICU4     --------->AtMYB61                                        <---------KAN4(1)       <---------WOX13(1)  <---------MYB59                                          --------->KAN4(1)  <---------LBD16        ------->TEIL            --------->YAB1                <---------WOX13(1)  -- ------>GT1<---------WOX13(1)------>MYB83 <---------TOE2(3)            <---------AHL20(2) ------>ZmHOX2a(1)   gttattcggattgattaataaaacatgaaccaaacctctcatttgatgtattcatagcacattttcaaaatgttttatttgatggattaatcctacctta  2133600                                          <---------AtMYB61                                          --------->MYB59                                          --------->MYB111(1)                                          --------->MYB46(2)                            --------->GLK1(2)                                                       <                           --------->ARR14(2)         --------->HSFB2a(2)                          --                           <---------GLK1(2)   <---------AtMYB61                                   <- ->TOE2(3)               ------->GAMYB<---------MYB46(3)                                ----------->GT1 ->TOE1(3)              --------->ANAC55(2)<------MYB83                                --------->DAG2 -------->AGL1          <---------ANAC55(2)<------MYB46(1)                            ---------->DOF2 --------->GT1        --------->MYB52(1)<---------ANAC46                 <---------CCA1(2)         <-   atggaaaaacaggggaaatatggataacggaatctctgagtggtttggtatggtttctcgattcgatttgggtttatatccaaacttgaaaagtaaaacc  2133700  <------MYB83  ----------->GT1                              <---------YAB1                         <---------AHL20(2)  <------MYB46(1)                              *TSS                                   --------->AHL20(2) ---------WOX13(1)                          ------>ZmHOX2a(1)               <-----------TGA1 ------->ARR14(2)                      <---------GLK1(1)        <<<<<<<<<SARD1        ----------->TBP --------GLK1(2)          ----------->GT1  --------->TOE2(3)    <<<<<<<<<CBP60g     --------->YAB1 --------ARR14(2)  ---------->DOF2     --------->GLK1(1)--------->ARR14(2)  <-----------HVH21   agattggtttaaacaaaaaaaaaaagaagagaaaaaccctgatttccttattcttccaaattcccaaatttctcaaatcgtcacaaatataaattccaaa  2133800                                                   --------->REM1(1)                                              <---------ICU4                                             <---------YAB1                                           --------->YAB1                                           --------->ATHB12                                           <---------ICU4                                      ------                                          --------->ICU4                                      <------                                          <---------ATHB12                       <---------ARR14(2)              ----------->GT1            <---------ARR11(3)              --------->YAB1     ---------   --------->ZAT14      <-------MYC3<---------At4g35610                 <-------TEIL      -----------   <---------ZAT14      ------->MYC3--------->At4g35610            --------->AtLEC2    ------->TEIL   atttctgcaccgaaacttgtttaaaacgtggtctagtcagcaaaatcattactacatctgtatcgcaccatgcattcatagcctatatgtatatcaatca  2133900                                                                                                  ---                                                                                    =================                                                                                    =================                                                                                    ------>ZmHOX2a(1)                                                                                 ====================    --------->TOE2(3)                                                            ------>ZmHOX2a(1)<-- --->YAB1                                                                        ==================== ---ATHB12                                                              --------->ZAT18       <------ >WOX13(1)                             <---------TOE2(3)                --------->ZAT14--------->ANAC58 ->CBF             *TSS           --------->ZAT6    --------->YAB1      <---------ZAT18--------->ANAC58   tagtttccataaaaactcaaaacacaaacaccaaaaacactatggataagacaatgacactgttcttgctcttgtccactctcctcctcacgacttcttt  2134000               --------->ICU4             --------->YAB1       ------>ZmHOX2a(2)      <---------GLK1(1)      <------ZmHOX2a(2)      --------->GLK1(1)     <---------AGP1     <---------ARR11(3)     --------->ARR11(3)    --------->RVE1(1)<----------ID1               --------->GLK1(1)                                 < ---------->DOF2---------->DOF2                   <---------GLK1(1)                                 < ------>At4g35610  <---------ICU4              --------->ANAC58                                   --- =============HOX2a_HOX2a                      --------->ANAC58                                   --- ============HOX2a_HOX2a                    <------ZmHOX2a(2)            <---------ALFIN1      ------ =============HOX2a_HOX2a                  --------->ARR11(3)         <---------ALFIN1  ------>ZmHOX2a(2) -------At4g35610 --------->ICU4      ------>ZmHOX2a(1)     --------->MYB46(3)         <------ZmHOX2a(2) ============HOX2a_HOX2a              =============HOX2a_HOX2a      -------->P        <---------ARR14(2) ----DOF2  <-----------HVH21   -------->P  <---------ARR11(3) -------->P--------->ZAT2--------->ARR14(2)   agctaaagatctctgtcataaagatgacaaaactaccctcctcaagatcaagaaatccctaaacaacccttaccacctcgcctcatgggatcccaaaacc  2134100                                                                                               ------                                                                                              <------ZmHOX2a(2)                                                                                             <-------                                                                                             --------                                       <-----------HVH21                                     <-------                                      <---------ZAT6                                         <-------                                --------->ANAC58                                             --------                                --------->ANAC58                                             --------                               <------NtERF2                                            <-----------HVH21                              <---------ATERF1(1)                                      --------->LBD16                              ------>NtERF2                                          <---------LBD16                             ----------->HVH21                                     ------>ZmHOX2a(2)                             --------->DEAR3(1)                                   --------->GLK1(1)                             <---------DEAR3(1)                                   <------ZmHOX2a(2)                            ------>NtERF2    <---------ALFIN1                     <---------GLK1(1)                            --------->RAP2.3(1)                                  <---------ARR11(3)                            --------->ATERF1(1)                                  <---------ARR14(2)                            <------NtERF2    ------->GAMYB                       --------->ARR11(3)                           <---------ATERF1(1)                                   <---------ARR14(3) <-------GAMYB             <---------RAP2.3(1)     <-----------HVH21             --------->ARR14(3) -----------RAV1(1)       <---------RAP2.6(2)--------->AtMYB61              <------NtERF2  ---------- ---------MYB46(3)        <---------DEAR3(1)--------->MYB46(3)            <---------DEAR3(1)<-------- --->MYB46(1)            --------->ZAT18    <---------MYB55(2)           --------->RAP2.6(3)--------- --->MYB83               <---------ZAT14  --------->WOX13(1)     --------->YAB1----------->ARR10 --->DEAR3(2)           --------->ALFIN1 <---------ETT(2)       <---------ATHB12 --------->ARR14(2)--   gactgttgctcttggtactgcctcgagtgcggcgacgctactgtcaaccaccgtgtcacttccctaatcatacaagacggcgagatctccggtcagatcc  2134200                     <---------ARR14(2)        <---------DEAR3(2)        <------MYB83 --------->ARR14(2)       <---------DREB2C(2)  --------->ZAT14    <-----------ARR10 ----------->HVH21   <---------ARR11(3) >ZmHOX2a(2)         ------->TEIL --GLK1(2)           <---------ARR11(1) ->ARR14(2)         <---------CCA1(2)                                        ------>MYB83 --ARR14(2)     -------->P                --------->LBD16                    ------>MYB46(1) --ARR11(3)     <---------At5g28300      --------->ANAC46                  ------->GAMYB        ----- ->ARR11(3)    <-----------GT1           <---------HSFB2a(2)             -------->P            <----- ->AGP1<---------DEAR3(1)                --------->HSFB2a(2)             ------>MYB83  --------->ANAC58 ->ARR10<------MYB46(1)            <---------ARR11(3)          <-----------HVH21       --------->ANAC58 -At4g35610  <---------ANAC58     <---------CCA1(2)   -------->P         ------>MYB46(1)       ------ >At4g35610  <---------ANAC58    <---------MYB52(1)<---------MYB52(2) --------->MYB46(3)       <----- --------->RAV1(2)  <---------ARR14(1)  <---------LBD16 --------->TOE2(3)--------->ANAC46      <-----   cccctgaagtcggtgacttaccgtatcttacatcccttatcttccgcaaactcactaacctcactggtcacatccaacccactatcgccaagctcaagaa  2134300                                                                    --------->ARR11(3)   <----------DOF2                                --------->GLK1(2) --------->GLK1(2) <----------DOF2   <---------DAG2         ------>MYB83       ------>ZmHOX2a(1)     <---------GLK1(2) <---------DAG2 -->TEIL                  ------>MYB46(1)    --------->LBD16<---------At4g35610   <---------WRKY18(1) ----ARR14(2)    <---------ZAT2          <---------ARR14(2) --------->ZAT2       --------->WRKY38(1) --->ARR14(2)    --------->ZAT2    <-----------HVH21    <-----------HVH21    <-------TEIL ----ARR11(3)    <---------At4g35610     --------->ARR14(2) --------->At4g35610  --------->WRKY12 ----GLK1(2)     --------->At4g35610    <---------MYB52(1)  <---------ZAT2   <---------ZAT14   cctcacttttctcagactaagctggaccaatctcaccggtccggttcctgagtttctgagtcagctcaagaatcttgagtacattgacctttccttcaat  2134400  Previous    Next  AGI:  At5g06865.1    Description:  other RNA Range:  from: 2132198    to: 2133747    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g06860.1    Description:  PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding. Identical to Polygalacturonase inhibitor 1 precursor (PGIP1) [Arabidopsis Thaliana] (GB:Q9M5J9); similar to PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2), protein binding [Arabidopsis thaliana] (TAIR:AT5G06870.1); similar to polygalacturonase inhibitor protein 5 [Brassica napus] (GB:ABX46551.1); contains InterPro domain Leucine-rich repeat, N-terminal (InterPro:IPR013210); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 2132351    to: 2133588    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g06870.1    Description:  PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2); protein binding. Identical to Polygalacturonase inhibitor 2 precursor (PGIP2) [Arabidopsis Thaliana] (GB:Q9M5J8;GB:Q9FL58); similar to PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1), protein binding [Arabidopsis thaliana] (TAIR:AT5G06860.1); similar to polygalacturonase inhibitor protein 5 [Brassica napus] (GB:ABX46551.1); contains InterPro domain Leucine-rich repeat, N-terminal (InterPro:IPR013210); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 2133919    to: 2135167    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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