Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  --------->ATHB12   <---------WOX13(1)           --------->YAB1                  --------->ZAT14                  <--------P             <---------ANAC46          -                  <---------ZAT14                 <-------GAMYB           <---------ANAC58          <               <---------MYB46(3)             <---------bZIP60(2)         <---------ANAC58--------->ARR14(2)            <-----------RAV1(1)<---------YAB1 <---------ANAC58         <---------MYB52(1) ------->TEIL   <-----------GT1--------->ZAT18             <---------ANAC46        --------->At4g35610 <---------ARR14(2) --DOF2<<<<<<<<<TBF1   --------->ATHB12       <---------ANAC58        <---------At4g35610<---------CCA1(2)   ttttttttcttcttctgtggttcactgatttgtatgatttgttttatgacttggttgatataagaaggaatcagttgcttcttcataatgtgtatctcca  2059800                                        <---------HSFB2a(1)                                        <---------HSFC1(2)                                        --------->HSFC1(2)                            --------->At5g28300                                        --------->HSFB2a(1)                      ----------->HVH21 --                                   <---------HSFB2a(2)                           --------->ZAT18  ---                                   --------->HSFB2a(2)                         <---------At4g35610---                                   <---------HSFC1(1)                          --------->At4g35610---    ---------->DOF2         --------->ZAT6           --------->ANAC58     --------->YAB1         <--- ---------->GT1             <-----------GT1          --------->bZIP60(2)--------->ANAC58    --------- ---------ZAT6            <-----------GT1            --------->ANAC58   --------->ANAC58    <--------   tagtgtaaaaggctccaaactctgaatttttcactatctagaagcttctgtagccacggcctgagattgagcacaagcattagctcacagtgattttaat  2059900      <----------DOF2  --------->ANAC58  --------->ANAC58 ------->LBD16 ------>ANAC46                <----------DOF2 ------>ANAC58               --------->TOE2(3) ------>ANAC58              <---------HSFB2a(1) ------LBD16               ------->TEIL                       ------>ZmHOX2a(2) >AHL20(2)                <---------ARR14(2)  =======================HOX2a_HOX2a -AHL20(2)        --------->ICU4              ------>ZmHOX2a(1)                            ----------   ccgcaagcctttctcttgcaattaagaagaacctttgtgatactcttcctctcatccacattgatctatctctgtgtgaatgaagcatatgaacaacaaa  2060000                                                                                       <---------AHL20(2)                                                                                      <---------AHL20(2)                                             --------->YAB1                           --------->AHL20(2)                                       --------->ANAC58                        <---------MYB46(3) <--                      <---------At5g28300   <---------ATHB12                 <-------GAMYB        ---        <----------DOF2                --------->ANAC58                   <---------LBD16         <--       <---------ANAC58          --------->GLK1(2)        ---------->DOF2--------->MYB52(1)      ----       <---------ANAC58          <---------ARR11(3)     <---------AHL20(2)<---------At5g28300   <---- ->RAV1(1)           <-----------GT1 ---------->DOF2   --------->AHL20(2)<-----------GT1        -----   aaacaagtagcttttggcaagagttacagtctcaaaatctaaagcaatcgtgtccaatttaaaagaaaaaacaattcacggttgtcgattaatttgcaag  2060100                                                                              <------NtERF2                                                                 <-------TEIL--------->LBD16                                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                --------->GLK1(2)                                                                --------->CCA1(2)                                                               --------->ARR11(1) --------->GLK1(1)                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                          <xxxxxxxxxxxxxxxxsmallRNA(i)                                                          <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                          <xxxxxxxxxxxxxxxxsmallRNA(s)                                                         <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                                         <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxx                                                       <------NtERF2        <---------ANAC46                                     --------->DAG2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ANAC46          <------ZmHOX2a(1)           <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ANAC58         <----------ID1               <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxx --------->ANAC58         ----------->GT1              ----------->RAV1(2) <---------LBD16 <---------AHL20(2) -------ZAT18            <---------TOE2(3)             <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ------>ZAT14      <---------------AGL15              <xxxxxxxxxxxxxxxxsmallRNA(s)<---------GLK1(1) - -------ZAT14      --------------->AGL15         <-------TEIL <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)     - ----->ALFIN1     <-----------------AG----------->GT1 ------>NtERF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---PIF5          <-----------------AGL1----------->GT1<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  ---- -->PIF5     <---------MYB46(3)    ---------->DOF2 <-----------HVH21<xxxxxxxxxxxxxxxxsmallRNA(s) ----   tgcaggccaaactggaggttaacatataaggaaaaaaaaaaggtgaaaaaattcgtcgcctgagagattcgaactctcgcggggaaaccccatttactta  2060200                     ------>NtERF2                    <xxxxxxxxxxxxxxxxsmallRNA(i)               <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               xxxxxxxxxxxxxxxx>smallRNA(s)               <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              --------->MYB46(3)              xxxxxxxxxxxxxxxx>smallRNA(s)              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 <---------ICU4           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                --------->ATHB12           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <---------AHL20(2)           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                --------->AHL20(2)-------->ATHB1         <xxxxxxxxxxxxxxxxsmallRNA(se3)                   <---------AHL20(2)  <---------AHL20(2)         <xxxxxxxxxxxxxxxxsmallRNA(s)        --------->AHL20(2)         <---------WOX13(1)      --------->ANAC58                       <---------AHL20(2)        <------------CBF      ------->GAMYB<xxxxxxxxxxxxxxxxsmallRNA(s)          <---------AHL20(2)   <---------ATHB51      --------->ANAC46             *TSS     <---------ATHB12 <---------AHL20(2)--------->ATHB51      --------->ANAC58  ---------->DOF2 ------------>CBF --------->AHL20(2)   --------->AHL20(2) xxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxsmallRNA(i)         <---------WOX13(1)    --------->ICU4 xxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxsmallRNA(i)     --------->ATHB12--------->MYB52(2) -------->ANAC58  <xxxxxxxxxxxxxxxxxsmallRNA(fl3)    --------->ICU4 <---------MYB52(1) -------->ANAC58  <xxxxxxxxxxxxxxxxxsmallRNA(si3)  <------------CBF --------->DOF5.7(2)  <---------AHL20(2) ----->At4g35610 <xxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------AHL20(2)--------->TOE2(3)    --------->AHL20(2) ----->ZAT2<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------TOE2(3)  ----------->GT1<---------YAB1    --   gcaggcaaacgccttaaccactcggccaaagcgacgatgatgctcaattaatgaattgattaatttaatcgttaattgaaattattagtataaaatagaa  2060300                                                                                 --------->YAB1                                                                                <---------ATHB12                                                                             <---------------AGL15                              <----------DOF2                               ----------------->AGL1                  <---------HSFB2a(2)                                   <---------ANAC58    ----------->GT1     --------->TOE2(3)            <---------YAB1     <---------ANAC58 ------->YAB1     --------->HSFB2a(2)          --------->ARR11(3)     <---------AHL20(2)           --   atcaaaatgtgaaatttcttccaaaacattagcttttcattcactcgtagaacttgtaatagagtagctcatttacttgccaaacatggttgtcttcaat  2060400                  <---------ANAC58                  <---------ANAC58   --------->ATHB12                --------->YAB1          <---------YAB1             ----------->GT1                 --------->TOE2(3)      --------->ZAT14       ------>ZmHOX2a(1)              <----------DOF2      <---------ZAT14    ------>ZmHOX2a(1)              <---------WRKY18(1)    ---------->DOF2 <---------MYB111(1)  ---------->ID1 <---------MYB46(3) >>>>>>>>>WRKY18     <-----------GT1        -- ----->TEIL     <---------YAB1 <---------WOX13(1)  ------->TEIL    --------->ICU4                ----   gtaactactactctgattatgcttgtcctcctaattgaatggttgaacaattgtaccttgactttagccattcttaattaacaaagctcaatctcgacga  2060500                                                                                                    <                                                                                                    -                                   --------->DAG2                                                   <                                  ---------->DOF2                                                <---                    <---------ANAC58                                  --------->AHL20(2)        <----          ----------->GT1    --------->YAB1                         ----------->GT1             -----      --------->AHL20(2)    <---------YAB1                    ---------->DOF2           <---------ZAT14 --------->GT1      <---------ANAC58                     ----------->GT1              --------------- ------>DOF2      --------->ARR11(3)           <---------TOE2(3)  ---------->DOF2   --------->MYB52(1)   aaagaaaaaaaaatgtgaaatttcttgattatcaaaaaaaggagtttttaagtttgaaattgtataaagaaagaaaataagaaaactgactgtacatatt  2060600                               ----------->GT1 <---------AHL20(2)        <------ZmHOX2a(1) ---------AHL20(2)        <------MYB46(1)                                                          -- -------->AHL20(2)        <------MYB83                                                             <- ---------AHL20(1)       --------->MYB59                                                          --- ------AHL20(2)      --------->DAG2                                                        --------->ANAC58 -----AHL20(2)       ------------------------>ANAC81                                       --------->ANAC58 ---->AHL20(2)     ---------->DOF2                                                         --------->ANAC46 >AtSPL8---------->DOF2 <--------P    ---------->DOF2                                 ----------->HVH21   aattttttttaaaagaaaaaaaaaaggtaggaaatgaaaaaaaagagagaactagacaaatttgttgatcaattctctaacttcttcgatgacaagccat  2060700  Previous    Next  AGI:  At5g06680.1    Description:  SPC98 (SPINDLE POLE BODY COMPONENT 98). similar to tubulin family protein [Arabidopsis thaliana] (TAIR:AT5G17410.1); similar to tubulin family protein [Arabidopsis thaliana] (TAIR:AT5G17410.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO23417.1); similar to gamma tubulin ring complex protein 3 [Physcomitrella patens subsp. patens] (GB:EDQ74423.1); similar to gamma tubulin ring complex protein 3 [Physcomitrella patens subsp. patens] (GB:EDQ53024.1); contains InterPro domain Spc97/Spc98; (InterPro:IPR007259); contains InterPro domain Gamma tubulin complex protein 3 (InterPro:IPR015697) Range:  from: 2056588    to: 2059788    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g06685.1    Description:  pre-tRNA. tRNA-Ser (anticodon: GCT) Range:  from: 2060154    to: 2060235    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g06690.1    Description:  (THIOREDOXIN-LIKE 5); thiol-disulfide exchange intermediate. Identical to Thioredoxin-like 5, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9FG36;GB:Q9SWQ2;GB:Q9XFI2); similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT5G04260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23414.1); contains InterPro domain Thioredoxin family (InterPro:IPR015467); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain (InterPro:IPR013766) Range:  from: 2060502    to: 2061957    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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