Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <---------LBD16                  <---------ARR14(2) --->GT1  --------->GLK1(1)          <------ZmHOX2a(1)                                            --- ->ANAC58<---------ARR14(2) <---------ALFIN1                                <---------ANAC46 -------- ->ANAC58--------->ARR14(2)<---------At4g35610                   ------>ZmHOX2a(1)      <----------DOF2   aaatttcgacggatttgttcaaattttgcagcacctcgaggatagttttcaattgagaaataagctccttagggacttgtttgtattctcctttaacaac  2016100                                    <---------ZAT14                                    --------->ZAT14                              <---------ARR11(3)                              --------->ARR11(3)                        ----------->GT1                      ------>MYB46(1)                                            ---------->DOF2                      ------>MYB83  <---------At4g35610                  --------->ARR14(2)                     --------->MYB52(1)                                  <---------ARR14(2)                     ----------->RAV1(1)                             <---------LBD16                    <---------MYB55(2)                             --------->GLK1(2)    <-------TEIL                    --------->AtMYB61                    --------->WOX13(1)  --------->TOE2(3)                    --------->MYB46(3)                --------->ANAC58--------->HSFB2a(2) ------>At4g35610  --------->MYB46(3)  <---------At4g35610 <---------ATHB12  <----------DOF2 ->MYB46(3) <----------DOF2  <---------CCA1(2)        --------->ANAC58<---------HSFB2a(2)    --------   agcttcagtgctatcttttccaccaacagttatatctctgcagataattgaaaacgaagcaatcaaacaattctggatactttaaaagcattcattttta  2016200                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                    <---------TOE2(3)       ---------                                                                   <-----------RAV1(2)     <---------ATERF1(1)                                                                  <-------TEIL           <------NtERF2                                                                 --------->GLK1(2)       --------->ATERF1(1)                                                                <---------ARR14(2)     <---------DEAR3(1)                 --------->TOE2(3)   <---------YAB1             <---------GLK1(2)      <---------ANAC58                 --------->TOE1(3)   --------->ICU4             --------->ARR14(2)     <---------ANAC58         <----------ID1            --------->YAB1         ----------->HVH21            <---------ANAC46 <---------AHL20(2)               --------->ICU4       --------->ARR14(2)             <---------LBD16 --------->AHL20(2)       ---------->DOF2              <---------ARR14(2)    ---------->DOF2<------NtERF2 ->AHL20(2)    ------->TEIL       <---------ATHB12    <------ZmHOX2a(1)<--------P   --------->ALFIN1   tattaaaaaataagacgaaccttgaatccaaagccgatgatgattcactgatagaaggattcgacagattcaggtaagcgaaagaagtggcggaggcagc  2016300                                                                                    --------->WRKY38(1)                                                                                    --------->WRKY12                                                                            --------->TGA2(2)                                                                            ----------->HVH21                                                                           <-----------TGA1                                                                           <-----------HVH21                                                                          <---------O2                                                                          --------->TGA1a                                                                          <---------TGA1a                                                                          --------->O2                                                                          <---------bZIP60(1)                                                    <-----------HVH21     --------->TGA2(1)                                                <------NtERF2             <---------ANAC55(2)                                               <-----------HVH21          --------->ANAC46                                               <---------SPL7             --------->bZIP60(2)                                               ------>NtERF2              --------->bZIP60(1)                                              <---------ANAC58            <---------TGA2(1)                                              --------->DEAR3(1)          --------->ANAC55(2)                                              <---------ANAC58            --------->ANAC58                                             --------->ATERF1(1)          --------->ANAC55(1)                                            ------>NtERF2                 ==================MYC_MYB -                                            <---------ATERF1(1)       <-----------HVH21<---------ANAC58 -NtERF2                                    --------->LBD16    <---------------AtSPL8  <---------ANAC58 ----At4g35610                             <---------DEAR3(1)  <---------------AtSPL3<---------WRKY18(1) --->ZAT2                 --------->ANAC58 --------->ANAC46   ======================bZIP_DOF      <-- --->At4g35610            --------->ANAC58<---------LBD16     ---------->DOF2      <--------P  <----- ----ZAT2         <---------ZAT2      <---------HSFC1(2)  --------->LBD16 --------->ANAC58    <------ >ATERF1(1)       --------->At4g35610 --------->HSFC1(2)<---------LBD16  <-----------STF1    <-------   tatcgccaatgggaacagagagctcgaccagcaagttggaagtctccggcgtcccttcaccggagaaagtacggtcacgtcaccggttgacttgggcgtc  2016400                    <------NtERF2         <---------ETT(2)       --------->MYB52(1)      ----------->HVH21      ----------->TGA1    <---------At4g35610    --------->At4g35610 ---------->DOF2    --------->ZAT2 --------->LBD16    <---------ZAT2 ----------->GT1                                                             <----- -------->ALFIN1   <------NtERF2                    --------->ARR14(2)                     --------->TOE1(2) -------ANAC46   <---------LBD16                    <---------ARR14(2)                     --------->TOE2(2) -NtERF2 <---------bZIP60(1)                  --------->TOE1(2)  --------->ANAC58    <-----------GT1 -----HVH21   --------->ANAC58          --------->HSFB2a(2)      --------->ANAC58 <---------GLK1(1) --DEAR3(1)   --------->ANAC58          <---------HSFB2a(2)    ---------->DOF2   >>>>>>>>>>GATA-1   gagtggagctgacgacaaggccggagaaaagagagaatagttttagaacgagcgaattttgaagcgaaagccatggaattgtggatttcacaacgtagga  2016500  <---------TOE2(3)               <<<<<<<<<TBF1                                  --------->LBD16 -ZmHOX2a(1)            <----------DOF2 *TSS        <-----------GT1            <---------LBD16   gattgagaatggacaagacttgattacttttatttcttcttcatctctaagaaattacatttctgttaaatcgattatgtctccggttaacaaatatcaa  2016600                                               --------->DEAR3(1)                                              --------->RAP2.3(1)                                              <------NtERF2                                              *TSS                             --------->LBD16 ------>NtERF2                           <---------LBD16   --------->LBD16                   <---------YAB1    <---------AHL20(2)                                    ----------                   ----------->GT1   <---------YAB1                                   --------->WOX13(1)                 --------->YAB1     <---------AHL20(2)                  --------->ALFIN1 >>>>>>>>>RAP2.2                --------->ICU4      --------->AHL20(2)---------->DOF2--------->DAG2 <------ZmHOX2a(2)              <---------ICU4--------->LBD16 --------->ANAC46        ---------->DOF2--------->ARR11(3)           --------->YAB1 <---------LBD16  <---------LBD16   <------NtERF2         <---------ARR11(3)   acacactggttcaacataatgatgttaaaccgggaaattttaattcccgccgaaaacaaagtcggagacaaaaagtgggaagagagatcaatctaaagac  2016700                                                             --------->YAB1                                                            <---------ATHB12                                                    --------->GLK1(2)                     <---------ATHB12                              <---------ANAC58     <---------GLK1(2)                <----------DOF2                              <---------ANAC58     --------->ARR14(2)              <---------ANAC58                            <---------ARR11(3)     <---------ARR14(2)     --------->ZAT2--------->WOX13(1)                            --------->ARR11(3)    <------ZmHOX2a(1)       --------->At4g35610                     --------->At4g35610       <------ZmHOX2a(1)    ---------->DOF2<---------ANAC58 >DOF2          <------ZmHOX2a(1)     ---------->DOF2     --------->WOX13(1)  ----------->HVH21   gaaaactttagaaatggaggaagagctcaagagcttgagcaaaagcttaggaggattctgcaatcatcttcaaagtagctgtgatgctttcaatcactct  2016800                 ------>ZmHOX2a(1)        <------NtERF2       ------>NtERF2      --------->DEAR3(1)                      <-----------GT1     --------->ATERF1(1)                     ---------->ID1    <---------ATERF1(1)                  <----------DOF2  ------>ZmHOX2a(1)  --------->TOE2(3)    <-----------HVH21           <-----------GT1    <---------CCA1(2)         --------->TOE1(3)<------   --------->DEAR3(1)      <----------DOF2   <-----------GT1          --------->YAB1         <-------   ctccagcgtcgccctattcctctcggtctctttttctctctctctttttccccatttctcctccgatttttgtcataaaccctaaaaattgaatttttcg  2016900                                                            --------->HSFC1(2)                                                            --------->HSFB2a(1)                                                            <---------HSFB2a(1)                                                            <---------HSFC1(2)                                                            --------->ZAT2                                                            --------->At4g35610                                                            <---------ZAT2                                                        --------->DEAR3(1)              <----------DOF2                          --------->ANAC46        --------->HSFB2a(2)         <-------TEIL                                <---------ALFIN1          --------->HSFC1(1)        --------->ARR14(1)                       --------->GLK1(1)  --------->At4g35610       <---------ARR14(2)                       <---------ARR14(2)  <---------At4g35610       <---------GLK1(2)                        <---------ARR11(1)  --------->ZAT2       --------->ARR11(1)                       <-----------ARR10<---------ANAC58       --------->ARR14(2)                       ------->TEIL<---------At4g35610<---------HSFB2a(2)      <---------HSFB2a(1)                       --------->ARR14(2)  <---------ZAT2 -----------AGL1                               <---------CCA1(2) <---------ANAC58           <-------- ----GT1--------->GLK1(2)<-------TEIL    <---------ATHB12--------->LBD16      <---------LBD16      --   attttggcagattcggcttcatcgacgttcatcaagggtctcaatcgtcgaatctccaccgcagcttccgagctcagttttctggaatctatgtcttttg  2017000  Previous    Next  AGI:  At5g06580.1    Description:  FAD linked oxidase family protein. similar to FAD linked oxidase family protein [Arabidopsis thaliana] (TAIR:AT4G36400.2); similar to FAD linked oxidase family protein [Arabidopsis thaliana] (TAIR:AT4G36400.1); similar to hypothetical protein OsJ_022269 [Oryza sativa (japonica cultivar-group)] (GB:EAZ38786.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39881.1); similar to unknown [Picea sitchensis] (GB:ABK24997.1); contains InterPro domain FAD-binding, type 2; (InterPro:IPR016166); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain FAD-linked oxidase-like, C-terminal; (Inte Range:  from: 2011289    to: 2016540    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g06590.1    Description:  similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99420.1) Range:  from: 2016646    to: 2018836    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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