Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     --------->GLK1(2)                                                --------->ANAC58           <---------ARR11(1)                                                     --------->MYB52(1)           <-----------ARR10                                                     <---------ARR14(2)           --------->GLK1(2)                                         --------->ANAC46     --------->ANAC55(2)           --------->ARR14(2)                         --------->ANAC58           --------->ARR14(2)           <---------ARR14(2)                         --------->ANAC46  --------->TOE2(3) <---------ANAC55(2)    <---------GLK1(1)                     --------->ZAT6             --------->ANAC58  <---------ARR14(2)    --------->GLK1(1)           <---------MYB52(1)    --------->ANAC58------>NtERF2 --------->ANAC58 ----YAB1  ------->TEIL       <---------ANAC58      <---------ALFIN1 --------->ANAC58  --------->ARR14(2) ->YAB1   <---------ARR14(1)  <---------ANAC58  <<<<<<<ZML2<---------At4g35610--------->YAB1   attctgaaatccgaatctaacaatctgtgaatgcgtttgctctcccactagaacacactccatctcactagacgccttaatcagaaacggaaacgtgatg  2000700                         ----------->RAV1(2)                        --------->ARR11(3)                        <---------ARR11(3)                                --------->At4g35610                 --------->GLK1(1)                                  --------->ZAT14                <---------ARR11(3)                                 --------->ALFIN1             --------->LBD16                                  ----------->RAV1(1)         --------->ARR14(2)                                 <---------ZAT14                      <---         <---------ARR14(2)               ---------->DOF2   --------->ZAT14        --------->ATHB12 -   ttatctggccaaatccgagatttcaacatctgggtatagaacccaaaagccttactaggctctgcaccagtggagaagcagcgaatgagtagattgaaga  2000800                                          --------->ARR14(2)                                          <---------ARR14(2)                                         <---------CCA1(2)                                         --------->GLK1(1)                                         <---------GLK1(1)                                  <---------SPL7                                  --------->LBD16                                 <---------ANAC55(1)            <-------GAMYB                                 <---------ANAC58              <---------MYB46(3)                                 --------->ANAC55(2)           --------->MYB52(2)                                 <---------ANAC46          <------MYB46(1)                                 <---------ANAC58          <------MYB83                                 <---------ANAC55(2)       <---------MYB46(3)        ================                              --------->GLK1(2)           <---------AtMYB61          ------->GAMYB                             <---------GLK1(2)           <--------P                 --------->ANAC46                             <---------ARR14(2)         <---------ANAC58          <---------DOF5.7(2)                            <---------HSFB2a(1)         <---------ANAC58         <---------WRKY12        <---------TOE1(3)   --------->HSFB2a(1)        <------MYB83              <---------WRKY45        <---------TOE2(3)   <---------HSFC1(2)         <------MYB46(1)           <---------WRKY38(1)  --------->ICU4            --------->HSFC1(2)         --------->ATHB12 --------->ALFIN1 -------ID1                ----------->ARR10           --------->MYB55(2)       --------->DOF5.7(2) --------->DOF2  ------->TEIL--------->ARR14(2)        <---------MYB46(3)      <-----------HVH21 <---   cgaaaagattagggttttgaatctgagagaagattccgtatgcatatcccaagagattggttggtttgttgaaggtggagtcgtcaacgcagagagcgag  2000900                        --------->At4g35610                        <---------At4g35610                      <------NtERF2                    <---------DEAR3(1)                                   --------->DAG2             -                  <-----------HVH21                         ================================HOX2a_HOX2a                 --------->O2                             <---------ARR11(3)                        -                 <---------O2                  --------->ANAC58         ---------->DOF2        ------                 --------->TGA1a               --------->ANAC58     --------->ETT(1)           ------                 <---------TGA1a             ---------->DOF2------>ZmHOX2a(2)         --------->ARR14(2) ==========================MYC_MYB  <-------TEIL          --------->ARR11(3)         <------ZmHOX2a(1) ---ZmHOX2a(1)   =======================================bZIP_DOF<---------AtMYB61    --------->ATHB12   gagacgactggcaacgaagacgtcggagatgagatgggttcgtaagagaaagccatgtatgatcttgaggtcggaaaaggaagagcaggattggagcaag  2001000          <---------MYB46(3)         --------->ALFIN1     <---------ANAC46    <---------LBD16                                                                    --------->ARR14(2) <---------HSFB2a(1)                                                                   --------->GLK1(2) <---------ZAT2                                                                        <---------ARR14(2) --------->HSFC1(2)                                                   <---------ARR11(3)  ----------- --------->ZAT2                                                       --------->ARR11(3)--------->At4g35610 <---------HSFC1(2)                                               ---------->DOF2     <---------GLK1(2) -------->ANAC58                                              --------->ANAC58     --------->YAB1 -------->ANAC58          --------->REM1(2)                   --------->ANAC58 <---------AHL20(2)   < --->ANAC58               <-------GAMYB <-----------GT1  --------->DAG2        --------->AHL20(2) <-- --->ANAC58              --------->ALFIN1               ---------->DOF2       --------->AHL20(2)  ---   gcaagcttcgggtgtttgaatcgaagtgtgttgagcacaatgttactcattctctgcaaaaagtacccaaaagttctcaaatttataagaatctgacata  2001100                                                                                               <-----                                                                                             <------ZmHOX2a(2)                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                           ==========                                                                                           ========== ------->GAMYB                                                ------------>CBF             <------ZmHOX2a(1) >HVH21     ------>ZmHOX2a(1)                             ----------->GT1  <---------At4g35610 ------ ------------MYB.PH3(1)        <----------DOF2      --------->YAB1         --------->At4g35610------>ZmHOX2a(2) ---------GT1          <---------TOE2(3)          --------->AHL20(2)<-----------GT1 <-----------HVH21 ------>MYB52(1)<---------MYB52(1)      ---------->DOF2--------->MYB52(1) ------->TEIL ---------->DOF2   taacggtctatttcctctgttttttaagtttgacttttgtaacaaagagcataaaaataagggtaacaattttctgcatctgcatttgtcaaaggatctg  2001200   ------>ZmHOX2a(2)  <------ZmHOX2a(2) <---------ARR14(3) <---------ARR14(2) --------->ARR11(3) --------->ARR14(3) --------->ARR14(2) <---------ARR11(3) <-----------ARR10 <---------AGP1 ----HSFB2a(2)                                 ---------->DOF2 -AGP1                               <---------WOX13(1) >GLK1(2)                           <---------ANAC58 >ARR11(3)                          <---------ANAC58 -ARR14(2)                          <------------CBF                                  ---------->DOF2 >ARR14(2)   ----------->GT1       --------->ATHB12                                 --------->LBD16 -ARR11(3) <------------CBF       <---------YAB1                                   <---------HSFB2a(2) =========HOX2a_HOX2a             --------->ICU4                                   --------->HSFB2a(2) ========HOX2a_HOX2a            <------------CBF                 <-----------------AGL1         <---- --->HSFB2a(2)      --------->AHL20(2)    <----------DOF2  ---------->DOF2   <------NtERF2<---------GLK1(2)   gaagatcttacaaaattgaaaatttaagatgatgtattgattgtctttagaaagaaaacttgaaagtatcagttttggcagagtcccagaaagaaactct  2001300                                                             --------->HSFC1(2)                                                             <---------HSFC1(2)                 <----                               <----------DOF2               <---------At4g35610       <-----------HVH21                      <---------At4g35610                 <--------P          <---------ANAC58  -----                 <---------ANAC58                      --------->LBD16        <---------ANAC58  <----                 <---------ANAC58                     --------->LBD16      <----------DOF2 --------->AtLEC2     <---------DEAR3(1)  <---------At4g35610         <------NtERF2        <---------ANAC58 --------->ANAC58 ------DOF2<----------DOF2 <----------DOF2           <---------LBD16      <---------ANAC58 --------->ANAC58   ttgttcttcggctctttttgcttcttctgctttcttttctaactcttggatagtccccgggtaagcttcttcaatggctttcttgaatttgtcatgcaaa  2001400                 --------->LBD16         <---------At4g35610                                                                 <-------         <-------GAMYB                                                               --------->ANAC58         --------->At4g35610                                                         --------->ANAC46        --------->MYB52(2)   <----------DOF2                                         --------->ANAC55(1)      <---------MYB52(1)  --------->ARR11(3)                                         --------->ANAC58     <-----------HVH21    <---------ARR11(3)                                   ------>ZmHOX2a(1) -----ARR14(2)  --------->LBD16                                                ====================== ---->ARR14(2)  <---------ANAC46       <------MYB46(1)                       ----------->RAV1(2) -----GLK1(2)  <---------LBD16         <------MYB83  --------->GLK1(2)   <-----------GT1  -----------   ttctctctgtcagttgtcccggagacaagttctttagcatttggtttcttcagaaattctaacacattcaacaaattactcctgcacaagtaatgttact  2001500                       --------->ANAC58                       --------->ANAC55(2)                       --------->ANAC46                       --------->ANAC58                      <-------TEIL                     --------->CCA1(2)                  <---------YAB1                     --------->ARR14(1)               <-----------GT1                    --------->ARR14(2)           --------->ANAC55(2)   --------->MYB59  <---------ARR14(2)    --------->At4g35610 <---------MYB52(1) --------->ARR11(1)    ----------->RAV1(2)                                       < ----GT1 --------->At4g35610 --------->YAB1      <---------ANAC55(2)                             <--- ============HOX2a_HOX2a     <-----------GT1    <-------TEIL          --------->ZAT18            <--- >GT1 <------ZmHOX2a(2)<---------ANAC55(2)<---------At4g35610  --------->AtLEC2       --------->At4g35610   ccagttagatcaactcaatacagatacgaaatcacaattctttcatctgatacatatcaccattgatgcaaatgcacaaatagctctcagataaatgcta  2001600  Previous    Next  AGI:  At5g06540.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39889.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 1999182    to: 2001050    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g06550.1    Description:  Identical to F-box protein At5g06550 [Arabidopsis Thaliana] (GB:Q67XX3;GB:Q9FG15); similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G78280.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75104.1); contains InterPro domain Transcription factor jumonji (InterPro:IPR013129); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347) Range:  from: 2001135    to: 2003076    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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