Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    --------->YAB1                                                                                 <---------YAB1                                                                               --------->YAB1                                                                              <---------YAB1                                                                    <---------ARR14(2)                                                                    --------->ARR14(2)                                                    <---------At4g35610     <---------ICU4       <---------AtLEC2                             --------->At4g35610    <---------YAB1  <----------DOF2                       --------->YAB1             --------->GLK1(1) ---ARR11(3)                   <---------ATHB12  ------>ZmHOX2a(1)<------ZmHOX2a(1) <---------YAB1 -->ARR11(3)         ---------->DOF2   <---------ATHB12 ----------->RAV1(1)--------->ICU4    ------>ZmHOX2a(1)   tcatcttttgcatcaattcaactaaaagtttcaatctttctatcatttctcctcagcccaacaaaacaggaatccacattattatcatggttctcctcaa  1960800                                                                                              -------                                                                                              <------                                                                                              <------                                                       <---------LBD16                        -------                                        <---------ARR11(3)                        --------->ANAC46                 ----------->GT1        --------->GLK1(2)                         --------->ANAC58           <---------ATHB12     --------->ANAC58     ----------->HVH21            --------->ANAC58     --------->GLK1(2)          --------->ANAC46     --------->ETT(2)            --------->SPL7    <---------GLK1(2)           --------->ANAC58     <---------WRKY38(1)         <---------LBD16   accctagattctaatcaactcgttacacacttacaggccaaaaatctgaaaatagtcgacggagtcatcaacaggttgaatgctacggcatgagttacag  1960900                                               <---------ANAC58                                            --------->GLK1(2)                                           --------->ARR14(2)                                           <---------GLK1(2)                                           <---------ARR14(2)                                       --------->ATERF1(1)                                       <------NtERF2                                      ------>NtERF2                                     --------->RAP2.3(3)                                     --------->RAP2.3(2)           <----------DOF2           --------->DEAR3(1)         <------NtERF2              --------->ATERF1(1)         --------->At4g35610        --------->RRTF1(1)                                             <-         --------->ZAT2             --------->RAP2.3(1)                                --------->ZAT2         <---------At4g35610        --------->ERF1                                     <---------ZAT2         <---------ZAT2            --------->LBD16                                     --------->At4g35610    --------->DAG2                 <---------ATERF1(1)                       --------->ATERF1(1)   <-   --------->DAG2              --------->ARR14(2)                     --------->ARR14(2)         ----   ---------->DOF2             <---------ARR14(2) <---------ZAT2      --------->GLK1(2)----------->RAV1(2)  ---------->DOF2  <---------ALFIN1<---------RAP2.3(1)           --------->LBD16       <---------At4g35610 -->ANAC55(2)      ----------->RAV1(1)----------->RAV1(1)       --------->HSFB2a(2)    ============== ---ANAC55(2)   --------->ANAC58  --------->ANAC46--------->At4g35610 <---------ARR14(2)      ------- ---HSFB2a(2)   --------->ANAC58 --------->SPL7<---------ANAC58<---------LBD16       ================ -->HSFB2a(2)   --------->ANAC46 <---------LBD16  --------->ZAT2--------->LBD16      <-----------RAV1(2)   aacaaaaaggcagctttctcgccacagttccagcatccggcgccagattccgagcagaaaactctcccggagaatcggagtcgtccctcagctgaagaat  1961000             <---------HSFB2a(2)          --------->CCA1(2)                                                 <------MYB83          --------->ARR14(1)                                                <------MYB46(1)          --------->GLK1(2)                                                --------->MYB59         <---------GLK1(2)                                            <---------TOE1(3)         --------->ARR11(1)                                           <---------TOE2(3)         <---------ARR14(2)                                      --------->At4g35610       ----------->ARR10                                         <-------GAMYB --------REM1(1)                                                --------->MYB52(2) ----------RAV1(1)                <---------WOX13(1)            --------->MYB46(2) ----->YAB1<-------TEIL         --------->ATHB12                <---------MYB46(3) ==========RAV           <---------ANAC58                     <---------MYB52(1)<---------ANAC46 -->YAB1 --------->ARR14(2)    <---------YAB1<---------ANAC46 <--------P<------ZmHOX2a(1) ==========RAV           <---------ANAC58<-----------HVH21  <---------MYB46(3) <-------TEIL  --------   gatgttgcagagattcgcgaggcaattgggtttgtgattgaatcgtcgcgagtgaattacactggttagttgaaggataggtccgtctaataagggtgga  1961100                                         ===============================HOX2a_HOX2a                                         <------ZmHOX2a(1)        --------->MYB46(3)            <-----------RAV1(2)           <---------ANAC46       ------>NtERF2                 <------ZmHOX2a(2)          <------ZmHOX2a(2)      --------->RAP2.6(2)       <---------ANAC55(2)            <---------ARR11(3)   --------->ANAC58             <---------ANAC46           *TSS--------->ARR11(3)   --------->ANAC58             --------->ANAC55(2)    <---------LBD16  <---------CCA1(2)   --------->ANAC46            <---------LBD16 <---------ARR14(2)------>ZmHOX2a(2) ->ALFIN1--------->AtMYB61 <---------ICU4==============================HOX2a_HOX2a            -------   gatggaagccaccatcgtcttcgttttcttcattacgggatcaggagaggttttggctctggagagatcgtcgtgtatcgattactactactacttgtcc  1961200                                                                  ----------------->AGL1                                                      <-----------GT1                             ---                                                  <---------CCA1(1)                             -----                                                  <---------RVE1(1)                   ------>NtERF2--                                                 --------->ARR14(2)                   <---------At4g35610                                        --------->AtMYB61      <---------SPL7  <---------ARR14(2) ---                                <-----------GT1  --------->ARR11(3)            --------->ARR14(2) <--                           <---------ANAC46      <---------ARR11(3)          ----------->ARR10  <----                   <------------CBF    ----------------->AGL2--------------->AtSPL3  --------->DEAR3(1) --->ID1      ----------->GT1<---------ZAT6      <---------ARR14(2)       ----------->GT1      ------   ctaatcgaaccagaccgagtaaattggtttagtgttacaagaccaaaaccagatatttatcttatcgtaccagaccgagtaaattcgccgcttatcgcct  1961300        ----------->GT1       <---------DEAR3(1)      --------->SPL7                         --------->LBD16    <---------SPL7                          ------->GAMYB    ----------->HVH21                      <---------LBD16    --------->LBD16                       -------->P  <---------LBD16                       <---------WRKY38(1) ------>DEAR3(1)                      <-----------HVH21 ->NtERF2--------->At5g28300        --------->LBD16 ---->NtERF2                      <---------LBD16               <---------ANAC58 -------->HVH21                  --------->MYB52(1)             <---------ANAC46 -------ETT(1)       --------->ARR11(3) <---------WRKY12  <---------TOE1(3)   ------------>CBF -----ATERF1(1)      <---------ARR11(3)--------->WRKY18(1)<---------TOE2(3)  ------>ZmHOX2a(1) --->DEAR3(1)  --------->YAB1 <-----------HVH21<-----------HVH21<---------ANAC58     <---------YAB1   ccgacccggacggtgaatcggaataccttctgggttaccgggtcaaccgggtcactgggtaaggtttcgttttcttctcctccaattctcatttcatctt  1961400                                           <---------ICU4                                          --------->ICU4                                        <---------GLK1(1)                                        --------->GLK1(1)                                      ------                               <-----------HVH21                                  <----------DOF2                           --------->HSFB2a(1)                               ----------->RAV1(2)                           <---------HSFB2a(1)       <XXXXXXXXXXXXXXXXXXXXMIR851-3P            <-----                           <---------HSFC1(2)   <---------ANAC58       <---------HSFB2a(1)     <-----                <---------TOE1(3)  <---------At4g35610                 <---------HSFC1(2)   ---------            *TSS<---------TOE2(3)  --------->At4g35610<----------DOF2  --------->HSFB2a(1)  <-------- <---------GLK1(1)         --------->HSFC1(2)   <---------ANAC58       --------->HSFC1(2)  <-------TEIL --------->GLK1(1)      <------ZmHOX2a(1) <---------ATHB12  <---------MYB46(3) ------>ZmHOX2a(1)   cagatttcttcatcgattagggtttaggaaccttgtcatcggaaatcatttcttgtctttgtttgttattcgaagcttctcctgcttatttgatacatat  1961500                        --------->MYB46(3)                   --------->ANAC46                 <---------AtLEC2                <---------REM1(2)         <---------ARR14(2)                                                           ------>ZmHOX2a(2)         --------->ARR14(2)                          --------->ARR14(2)             <---------ARR14(2) --->ARR14(2)--------------->AGL15                   <---------ARR14(2)             --------->ARR14(2) ----ARR14(2)<---------------AGL15              <-----------HVH21              --------->MYB52(1)   < ----GLK1(2)<-----------------AGL1     <------ZmHOX2a(1)            --------->At4g35610  <------ZmHOX2a(2) >ANAC55(2) <-----------------AGL3   <---------TOE2(3)             --------->DEAR3(1)<------ZmHOX2a(2) -ANAC55(2) --------->ZAT6           <---------TOE1(3)     <----------DOF2    ----------->HVH21   <--   tctctcttccagttactctacatggaaccattcgttgttaaggagaacatcgtcgcatccgcttcttcgccgatgaagaagcgacggatcgatcacactg  1961600          --------->ARR14(2)          <---------ARR14(2)         ----------------------->TaNAC69(2)        <---------MYB46(3)                                                         <---------DOF5.7(2)    ----------->HVH21                                                           <------MYB83  ----------->RAV1(2)                                  --------->CCA1(2)        <------MYB46(1)  <---------ZAT2                                      <---------ARR14(2)       --------->MYB59  --------->At4g35610                                 --------->ARR14(2)  <------NtERF2             <  <---------At4g35610                                 --------->ARR11(1) --------->LBD16          ---  --------->ZAT2               --------->ZAT6     <---------DOF5.7(2)   <---------ANAC46       ====== -----------RAV1(2)  <---------TOE2(3)         <---------MYB46(3)      <---------LBD16         ------ ---------HVH21     <-----------GT1        <---------DEAR3(1)     ------->TEIL --------->MYB46(2)----   agtcagctgatggttctgcgattaacgcttctaactctagtagcatcggtggtaacgatacggtgatgaacatggcggagtttggtaacgacaactccaa  1961700  Previous    Next  AGI:  At5g06410.1    Description:  DNAJ heat shock N-terminal domain-containing protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO39912.1); contains InterPro domain Heat shock cognate protein B, C-terminal oligomerisation; (InterPro:IPR009073); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623); contains InterPro domain Co-chaperone Hsc20; (InterPro:IPR004640) Range:  from: 1959537    to: 1961159    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g06420.1    Description:  zinc finger (CCCH-type/C3HC4-type RING finger) family protein. similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G01350.1); similar to Os02g0301000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046620.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64331.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 1961412    to: 1963039    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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