Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->ANAC55(2)                                     <------ZmHOX2a(2)         <---------ANAC55(2)                                    --------->ARR11(3)         <---------ANAC46                                       <---------ARR11(3)              -----   --------->SPL7                                         --------->CCA1(2)   <---------At4g35610 <---------SPL7   --------->ATHB12             <-----------------------TaNAC69(2)     ---------->DOF2   cagggtacgagacgtattggtcattgctctgagaattggaagcgagggagacgaagagagatttgagatcatcgagcttcttctgagtaaaagctctgca  1904700                         <------ZmHOX2a(2)                                            <---------At4g35610                        <---------ARR11(3)                       <---------MYB46(3)   --------->At4g35610           --------->ANAC46                                      <------MYB83    <---------HSFB2a(2)           --------->ANAC58  --------->GLK1(1)                   <------MYB46(1)<---------LBD16           --------->ANAC58  <---------GLK1(1)        ---------->DOF2  <---------At4g35610    ------- ------>RAV1(1)         --------->ARR11(3)          ----------->HVH21  --------->At4g35610<---------ARR14(2)   acaaaacacaaacacacaattgataagatcgatttccaatttagaacttagggagtgaaagggagattggttccgatgaatacctggaagcagaaatgaa  1904800                                         <------NtERF2             <---------MYB52(1)                                        ------>NtERF2 --------->ZAT2            <---------ANAC58                                        --------->LBD16            <---------ZAT2                                       --------->DEAR3(1)         --------->LBD16                                       <---------LBD16<---------ZAT2         <---------MYB52(1)                           <-----------GT1            --------->ZAT14 <------MYB46(1)                         --------->GLK1(1)            --------->At4g35610  <---------ANAC58      ----------->RAV1(1)<---------GLK1(1)            <---------At4g35610  <---------ANAC58  --------->YAB1  <---------ARR14(2)   <---------DEAR3(1)       <---------LBD16 <---------ANAC46 --------->ICU4   --------->ARR14(2)  <---------LBD16 <---------ZAT14 <------MYB83---------->ID1   <- --->DOF2------->GAMYB   --------->HSFB2a(1)      <-----------GT1 ------>NtERF2 <---------ANAC58 <---   gcgatgatcaacagaagacgaattcgaatttcccattctcgccgggggtttttctctgctcagttctccggctggtttcgtttcgtcgtctctgttcttc  1904900            <---------ARR11(3)            --------->ARR11(3)         <---------WOX13(1)       --------->ATHB12                                                           --------->ICU4      <---------YAB1                                                            ------->TEIL  <---------YAB1                                                        --------->ANAC58 <---------AHL20(1)                                                     --------->ANAC58       ------ <---------AHL20(2)                       -------->P                    --------->ANAC46     <------- --------YAB1 ------>ZmHOX2a(2) <-----------GT1                     --------->ANAC58      --------->ZAT14 ---------------------ANAC81 <---------ICU4      --------->AHL20(2) --------->ANAC58 <---------YAB1   tattatttttgattgatcttcaacttcttcaaaattacaacttcaaccccttaaaatataagtatttgataagcacgaaatgtacttatcagagaactaa  1905000         <XXXXXXXXXXXXXXXXXXXXMIR838      <------MYB46(1)                                                      <----------DOF2      <------MYB83                        --------->ARR11(3)   <---------AHL20(2)   >>>>>>>>>CBP60g                    --------->At4g35610 <---------YAB1  ------>ZmHOX2a(2)   >>>>>>>>>SARD1               <------ZmHOX2a(1) <------ZmHOX2a(1)     <---------ARR11(3) --->MYB52(1)                <------ZmHOX2a(1)  <---------TOE2(3)       --------->ARR11(3) --MYB52(2)          ---------->DOF2--------->YAB1===============================HOX2a_HOX2a        >   cagaaatttggtgagaagtagaagaaagagaggaggaatcagaagaaattgaggaagaagatgatttttttgatgatctttcgatggattgtttacagag  1905100                         --------->ANAC58                         --------->ANAC58                                   --------->ANAC46                         --------->ANAC46                           ---------->DOF2                      --------->ZAT18                              <---------WRKY38(1)         --------->GLK1(1)             <---------ARR14(2)          <---------WRKY12         <---------GLK1(1)      ---------->DOF2<----------DOF2    --------->WRKY18(1)        --------->ARR11(3)   --------------->AGL15               <-----------HVH21    ---------->DOF2   --------->ZAT14  --------->ARR14(2)     <-----------RAV1(2)  *TSS  <---------ARR11(3)   <---------------AGL15   --------->ZAT6<---------WRKY45   ----------->HVH21 >>>>>>>>TBF1         <-------TEIL    <------ZmHOX2a(1)--------->ANAC46  --------->ZAT18--------->RAP2.6(3)   aagaagaaaagatttcttctcaagtacacgaccataaagaggaaatgggctttaaacactaaacccaggtcaaagcccacgaaggcccatgaaggctcac  1905200                                              --------->At4g35610                                              <---------At4g35610                                              --------->ZAT2                                             ----------->RAV1(1)                                      --------->HSFB2a(2)                                      <---------HSFB2a(2)                                   --------->ARR14(2)                                   <---------ARR14(2)                            --------->ANAC58                                   <---------ARR11(3)                            --------->ANAC46                                   --------->ARR11(3)                            --------->ANAC58                                  <---------CCA1(2)                          <<<<<<<<<GATA-2                                 <---------MYB46(3)                          <<<<<<<<<GATA-3                              <---------ANAC46<---------ZAT2                 <<<<<<<<<GATA-4                             <---------MYB46(3)                              <<<<<<<<<GATA-1                         <---------AHL20(2)--------->At4g35610      <---------ANAC46         *TSS                     <----------DOF2 ------>ZmHOX2a(2)              <---------ANAC58       ----------              --------->AHL20(2)--------->ALFIN1             ---------->DOF2--------->ARR14(2) --------->YAB1      <---------DAG2<---------AGP1 ----------->GT1   <---------ANAC58---------->DOF2   taatcttcatttcggtttaaatactttttaatgggtggatctcgaagcagcagagtgaaatataaaagttgcgagttgaatccacacaaagaacagaaaa  1905300           ---------->DOF2     <---------ARR11(3)     --------->ARR11(3)                      <-------TEIL    --------->YAB1               --------->ZAT18           <-------TEIL   ----------->GT1       --------->ANAC46   --------->CCA1(2) ---------->DOF2  <------NtERF2--------->At4g35610  <-------TEIL <----------DOF2 ->GT1    <---------AHL20(2)   <---------At4g35610 --------->CCA1(2)    --------->GLK1(1)          <-   taagaaagataataaaaggaggcaaacacgaagagctcacaacaagattcaagattcaagattcatgctttcagatttcaactagtgagtctaatctgta  1905400                <---------ARR14(2)                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <---------ICU4                                                                           ----        --------->ATHB12    <---------ANAC58                                                     ----       --------------------->WRI1                                                               -----      --------->ANAC55(2)   <---------ANAC58                                                   <-----  --------->TOE2(3)    ------>ZmHOX2a(1)       <----------DOF2                            <----------  <---------MYB59     --------------------->WRI1                                        <----------DOF2 ----------GT1  --------->ARR14(2)     <-----------GT1   <---------YAB1            xxxxxxxxxxxxxxxxxx   taaaccttacttattgcaaatcgtccttgttcttgtcgaatatacagttcttttttggtatcattttttatgtgtctatgtctgttttgactttgttgcc  1905500         <---------------AGL15                                                            xxxxxxxxxxx         --------------->AGL15                                                           xxxxxxxxxxxx        ----------------->AGL2                                                         xxxxxxxxxxxxxx      <-----------GT1                                          --------->At5g28300     xxxxxxxxxxxxxx ----->LBD16                                                  ----------->GT1         xxxxxxxxxxxxxxx -->NtERF2                      <----------DOF2          ---------->DOF2         ------>ZmHOX2a(1) xx ---->LBD16        ---------->DOF2                     <---------WOX13(1)       --------------->AGL15 ----ANAC46 --------->ZAT6   <---------ARR11(3)     --------->AHL20(2)          ===================== -RAV1(1)=======================================================================================MADS_MADS xxxxx>smallRNA(fl3)         --------->ARR11(3)     <---------AHL20(2)    ------>ZmHOX2a(1)    ------   gagaaattttactaaaactagtaaagcttaagctctttcagtcgtttttcatgtttaattgaagcagtaaattgtccttcttcctctattggatgccatg  1905600  Previous    Next  AGI:  At5g06260.1    Description:  nucleolar protein-related. similar to calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G34070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15842.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain TLDc (InterPro:IPR006571) Range:  from: 1902600    to: 1905102    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g06265.1    Description:  hyaluronan mediated motility receptor-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G44280.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96442.1) Range:  from: 1905293    to: 1908168    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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