Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              <---------ANAC58                                                                            --------->ANAC55(2)                                                                    ----------->GT1                                                                   --------->DAG2                                          --------->YAB1     --------->At4g35610                                  --------->ALFIN1           <---------At4g35610                                <---------bZIP60(2)         ----------->RAV1(1)                                <---------O2              <---------At4g35610                                <---------TGA1a           --------->ZAT2    <---------ANAC58        -                    ----------->GT1      --------->ICU4   --------->At4g35610           <---------YAB1              --------->YAB1    <---------ANAC46          <---------ZAT2   <-------TEIL ----------->HVH21           --------->YAB1       <---------ZAT2--------->GLK1(2)  ---------->DOF2      --------->CCA1(2)     --------------->AGL15      ==============================bZIP_DOF <-------TEIL<---------YAB1---- -------YAB1 --------->AHL20(2)<---------AtMYB61   ---------->DOF2 <---------------AtSPL8        <---   attatttctctaaaaataaaaattgaaataagtgaggtgggaaatgataatcttacagcgagcagcagaaaggtacatacgtggtatgatatgactggat  1879800                                                                                <-----------TGA1                                                                               <---------bZIP60(1)                                                                               <---------O2                                                                               --------->O2                                                                               --------->bZIP60(2)                                                                               --------->ANAC58                                                                               --------->ANAC55(2)                                                                               <---------ANAC55(2)                                                                               --------->TGA1a                                                                               --------->bZIP60(1)                                                                               ======================                                                                               <---------TGA1a                                                                               --------->ANAC46                                                                              <-----------bZIP910(1)                                                                          --------->ANAC58                                                                          --------->bZIP60(2)                                                                          --------->ANAC58                                                                          --------->ANAC46                                                                    ------>ZmHOX2a(1)                                                                  ----------->RAV1(2)                                                                  ------>ZmHOX2a(2)                                                                  ----------------------->TaNAC69(2)                                                                 <------ZmHOX2a(2)                                                                --------->ARR14(2)                                                      <---------LBD16     --------->AtLEC2                                                 ======================bZIP_DOF--------->ANAC58                                                 --------->ANAC46--------->GLK1(2)                                           --------->At4g35610  <---------ARR14(2)                                           <---------ZAT2   ---------->DOF2   <-----------STF1                             <---------ANAC58    --------->O2   <---------ARR14(3)                             ----------->GT1     <---------O2   --------->ARR11(3)         <--------- <-------GAMYB               <---------ANAC58    --------->TGA1a<---------ARR11(3)     <---------CCA1(2) -------->MYB52(2)           <---------ANAC46  <---------ALFIN1 <---------GLK1(2)--------->TGA2(2) -------->AtMYB77    <---------MYB52(1)    <---------At4g35610  --------->ARR14(3)   <---------ICU4 --------HVH21      <---------SPL7       <---------ZAT18    =============================bZIP_DOF <--   gtcagttacaaatggagaagtccgttcgattgagtgaattttgtgagctccacgtctacggataaagatcctggccatgccacgtcatcatctctttctc  1879900                                              <---------MYB52(1)                                           ---------->ID1                                          <-----------GT1                                       <----------DOF2                ------------>CBF  --------->LBD16                ---------->CDC5                    <---------At4g35610 =bZIP_DOF                    --------->ZAT2 <------------------------ANAC81         <-----------GT1 -DOF2                        <---------ZAT2<------------------------ANAC81     --------->AHL20(2) -------ALFIN1                <---------At4g35610                   --------->At4g35610          <---   cctccccaaaaaaaactcgagcatcaaattcgagctcagcgttttttcgttttttttttttggttctctcatctcaatctcattatatcaccagtcaaaa  1880000                                                                                 <---------RAP2.6(3)                                                                              <---------At5g28300                                                                          <---------------AtSPL3                                                                       <---------ARR14(2)                                                                     <------NtERF2                                                                     --------->LBD16                                                                   <---------LBD16   <---------TOE1(3)                        --------->KAN4(2)                      --------->At4g35610   <---------TOE2(3)       --------->ARR11(3)                                      <---------At4g35610--------->WRKY18(1)       <---------ARR11(3)     ---------->DOF2               <-------TEIL <---------ANAC46          <- <---------HSFB2a(2)  <---------YAB1                <-------GAMYB<---------SPL7  <-----------HVH21 <- ---------CBF   --------->MYB52(1)         <--------P<---------MYB52(1)--------->ARR14(2)   ---------   attgtagaagacatttcccaactgattattcgtaaagcttacatggtagatggcagttaagtttcatcggccgggtcttgtaccgtcaaggtaaaccaat  1880100                                                                        <---------At4g35610                                        <---------LBD16             <---------REM1(1)                                       <---------ANAC58         <XXXXXXXXXXXXXXXXXXXXMIR171B/C                                       <---------ANAC58     --------->YAB1                      <---- --------ANAC58                        <---------ANAC46 <---------AHL20(2)                     <----- --------ANAC58            <---------AHL20(2)          <---------WOX13(1)                     <------ --->CBF         --------->GLK1(2) <----------DOF2  <---------YAB1<------------CBF        <---------GLK1(1)   agcttacatttctctcgataatcttcgattttatgctcttttcgtggaatttttctgattaatcgtggtattgtagctgttcaaacccttggatgtccgt  1880200                                                                  <------ZmHOX2a(1)                                                               <---------HSFB2a(2)                                                               <---------LBD16                                                               --------->HSFB2a(2)                                                          --------->HSFB2a(1)                                                          --------->GLK1(1)                                                          <---------GLK1(1)                                                         <---------ARR14(2)                                                         --------->ARR14(2)                                                      <---------ANAC46                                                     <---------LBD16                       --------->YAB1                                                     <---------At4g35610                  <---------YAB1           <---------ANAC58                          --------->At4g35610                --------->YAB1           <---------ANAC58 <---------YAB1        <---------At4g35610                  <---------ATHB12   --------->TOE2(3)     <-----------------AGL3   --------->At4g35610                  <---------YAB1 -----MYB52(1)           <-----------------AGL2   --------->ZAT2--------->LBD16 ----------->HVH21 --GAMYB   <---------ANAC46 --------->REM1(1)    <-----------RAV1(1)        <---------ANAC58 ---MYB46(3)     <---------At4g35610 --------->AHL20(2)--------->LBD16      <---------ANAC58   tggaaccttgatttcgtgcagaagagtgctacaattggattatatatcaaactgctgcggaaattccaggactcaattgtttgtgacctatgatgataag  1880300                                                                                                -----                                                                                                <----                                             --------->ANAC46                              --------->ALFIN1                                            <---------LBD16                              <---------ANAC46                                           --------->MYB52(1)                 --------->At4g35610                                          <---------ZAT14         <-----------GT1        <---------ANAC58                               --------->ANAC58         --------->MYB46(3) <---------At4g35610 <-----                               --------->ANAC58   <------ZmHOX2a(1)       ------->TEIL   <---------ANAC58                   <---------DAG2         --------->ZAT14     <----------DOF2 <---------At4g35610   <----------DOF2 <----------DOF2        --------->ZAT18    <---------DAG2--------->At4g35610<------   aactactttcttcagagaaaactttttggaaacaagaaaatgagttcacggaggactacccagccttttctccttgcatctgctgaagatggagtggctg  1880400                                        <---------MYB59                               --------->At4g35610     --------->WRKY18(1)     <------ZmHOX2a(1)    <-----------HVH21        ===============================HOX2a_HOX2a      <---------ANAC46 ---->At5g28300             --------->LBD16                                 --------->ALFIN1 ---GAMYB                 <-----------RAV1(2)                      ------->TEIL <---------ZAT18   <-- ----MYB46(3)             <---------LBD16             --------->ZAT6        <---------AtMYB61     <-- ---ANAC46         --------->ICU4    <----------ID1  <------ZmHOX2a(2)  <---------At4g35610       <--   ttaatgggtcaagagctagcgatgatgttcaggagatgagggccaaactcagtggatcactacaagatgaatatagctgtggtgaacttattcagtcttt  1880500                                                   <---------HSFB2a(2)                                          <---------ARR11(3)                                          --------->ARR11(3)                                         --------->GLK1(1)                                         --------->CCA1(1)            <------ZmHOX2a(1)            <---------GLK1(1)       ------>NtERF2                     <---------CCA1(1)                     <---------ANAC46    --------->At4g35610                  <---------RVE1(1)            --------->ZAT2    <---------At4g35610                  --------->RVE1(1)            <---------At4g35610 -------AtLEC2                          --------->ARR11(3)            --------->At4g35610 -------ANAC58                          <---------ARR11(3)<---------YAB1  ----------->RAV1(2) -------ANAC58 <----------DOF2 ---------->DOF2     --------->HSFB2a(2)<---------ZAT2             <---   gcatgatgctgccaggacttttgaactggctcttaaagagaagatatcttcttcgagattaccatggttttcagcagcctggctcggagttgatagaaat  1880600                                                                         <------MYB46(1)            <                                                                         <------MYB83               -                                                                     <---------MYB46(3)            <-                                                             <---------ANAC58                      --                                         --------->TOE2(3)   <---------ANAC58     <---------ZAT18----                           <---------DEAR3(2)           ------>ZmHOX2a(1)<---------MYB46(3)     -----                          --------------->AtSPL8    ------>ZmHOX2a(1)--------->MYB52(2)  --------->YAB1 ----TEIL                 --------------->AtSPL3 ------>ZmHOX2a(1)--------->TOE2(3)   <----------DOF2   gcatgggttaagacgttttcttatcaggtctgtaccattctaacatcagtcctccttcctagtgcttacattagttggtttctttgcactttcatggtac  1880700  Previous    Next  AGI:  At5g06210.1    Description:  RNA-binding protein, putative. similar to GR-RBP5 (glycine-rich RNA-binding protein 5), RNA binding [Arabidopsis thaliana] (TAIR:AT1G74230.1); similar to unknown [Picea sitchensis] (GB:ABK22008.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15865.1); contains InterPro domain RNA recognition motif, glycine rich protein (InterPro:IPR015465); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 1878472    to: 1879741    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g06220.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G11560.3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G11560.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G11560.4); similar to Os08g0482100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062067.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09288.1); contains InterPro domain LETM1-like (InterPro:IPR011685) Range:  from: 1880193    to: 1885644    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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