Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <---------MYB46(3)                                     <---------AtMYB61                                    --------->LBD16                                 <---------ZAT2                                   <---------MYB52(1)                                 --------->At4g35610                       --------------------->WRI1                                 --------->ZAT2                            <---------ANAC58 ---------                <-----------HVH21<---------At4g35610                <-----------GT1     <---------LBD16           --------->GLK1(1)    <---------ARR14(2)            <---------DAG2      --------->DOF5.7(2)           <---------GLK1(1)    --------->ARR14(2)       <-----------HVH21 <---------ANAC58<---------MYB52(1) -------->RAV1(1)          --------->MYB52(1)   <----------DOF2<----------DOF2 ---------->ID1   caacagtttggagatttctgtcagaaaacgagcggagctgtggtttctgcctttgcctctgtcacctttttagccatccttgtcgttatctccggtgttt  1878100                                                                   <---------ICU4                                                                  --------->ICU4                                                               --------->AHL20(2)  ----------->GT1     --------->MYB46(3)        <----------DOF2                 <---------AHL20(2)  --------->ICU4 >ALFIN1                   <---------GLK1(2)               ----------->GT1  <---------ANAC46   ctctcaaacgaccctaagtcaacaatacagactctttgagcgcaagaagaagcattgccaagggtttaattagtatttgtgtgaaatgtttatatggaag  1878200                    <---------ZAT18                    --------->ZAT18                                                                 <                    <---------ZAT14                                                            <-----                  <---------ZAT18                                          --------->ATHB12    <-----                  --------->ZAT18                                   --------->At4g35610     <--------                 <---------ANAC58                  --------->ICU4  ----------->GT1   <---------AHL20(2)                 <---------ANAC58          <---------MYB52(1)---------->DOF2      ----------->GT1   <   aagcttatattttgtatttgtgtgctcttggtgactctgttttctgttttgtattgatttttggaaagacagcaaaatgaatggaagttaattgtcactt  1878300                       <---------MYB52(1)      --------->AHL20(2)      <---------AHL20(2) --------->MYB52(2) ---------ANAC58  --------->ARR14(2) -----DOF2        <---------ARR14(2)                                                           <----- ----DAG2         --------->ARR11(3)                             <---------CCA1(2)      ---------->DOF2 ---GT1           --------->GLK1(2)                         ---------->ID1   <-----------GT1--------- ---------ANAC58  <---------ARR11(3)                <---------YAB1  <---------LBD16------------>CBF   tttcttgtttaaattttgaaaatctgttagttaacttaagcgtatagattagttttgattttgtcccatctctggattatatccatacaataaatccgtt  1878400                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                 --------->ANAC58 <--                                                                                 <---------ANAC46 <--                                                                         ------>ZmHOX2a(1)        <--                           <------------CBF                             *TSS  ----------->HVH21   ---                      <-----------------AGL1                           <---------ZAT18            <--                  <-----------RAV1(2) --------->YAB1                   --------->ZAT14            <--           ------->TEIL    --------->ARR14(2)                       ------->GAMYB--------->ANAC58<--- ----MYB52(1)   <-----------HVH21    <-------TEIL                  --------->MYB46(3)      --------->AHL20(2) ------>AtSPL8  ------>NtERF2      <---------ARR14(2)            ----------->RAV1(1)       <---------AHL20(2)   ccctctccaaatggaccgggccaggcccatattggccgattcatgacatgcttattcgtagtctctccaacagtcctctcgcgacgcataaattttaatg  1878500              <---------MYB46(3)            <---------ARR14(2)         --------->ANAC58         --------->ANAC58     --------->ANAC58     --------->At4g35610     --------->ANAC58     ----------->RAV1(2)  ------>NtERF2           <---------At4g35610  <---------ATERF1(1)    ------>NtERF2  --------->ABI4(2)     <---------ALFIN1 -------->DEAR4(2)     --------->ATERF1(1) ------NtERF2 <---------DEAR3(1) -------->ATERF1(1)   <---------ATERF1(1) -------->RAP2.3(1)   ------>NtERF2 --------RAP2.3(1)    <---------RAP2.6(3) --------ERF1 ------>ZmHOX2a(2) --------DEAR4(2)     <---------DEAR3(2) --------ATERF1(1)   --------->ANAC46 --------ORA47(2)    <---------DEAR3(1) ---->NtERF2--------->ARR14(2) --------->GLK1(1)                                      <-----------RAV1(1) --------RAP2.6(1)   --------->RAP2.6(2)                                              --------->ALFIN1 --------RRTF1(1)    <---------ATERF1(2)                                              <---------REM1(1) -------RRTF1(3)     --------->ATERF1(2)                 --------->LBD16           --------->ALFIN1 -------RAP2.6(2)   <---------ORA47(1)                   ------>NtERF2           --------->DEAR3(1) -------RAP2.3(2)   <---------ANAC46                    <---------ALFIN1         <---------ANAC46 -------RAP2.3(3)   --------->ATERF1(1)                 --------->DEAR3(1)     ------->GAMYB -------DREB2C(2)  <------NtERF2                      <---------ATERF1(1)     --------->ANAC46 -------RRTF1(2)   <---------ATERF1(1)                ------>ZmHOX2a(1)       --------->DEAR3(1)   -- ------>ATERF1(2) ------>NtERF2<---------GLK1(1)<-----------GT1            --------->ANAC46        <- -------DEAR3(1)  <---------MYB46(3)    --------->At4g35610              --------->ANAC46  <---------ANAC46 -------ATERF1(2)--------->ALFIN1       <---------At4g35610              --------->ANAC58  <---------ANAC58 ------------------WRI1<------NtERF2 <---------MYB52(1) --------->ANAC46 --------->ANAC58  <---------ANAC58   gcggcgctcgcaaggatcggtggccggcacctgaaatccgtctgcttaataaactcctccgcctcatgtttcttcacacaacgccgtggtgttgcttcca  1878600            --------->At5g28300           ----------->GT1           <---------MYB46(3)            ------->TEIL    --------->ATHB12              <---------DAG2                                           <---------LBD16   <---------YAB1                 <----------DOF2        --------->ANAC46                  <---------At4g35610  <----------DOF2              <-----------GT1       <-----------GT1               <---------TOE2(3) ------->ARR11(3)              ---------->ID1    <---------YAB1                    <---------TOE1(3) --------ARR11(3)             <-----------GT1    <---------WOX13(1)             <---------AHL20(2)   agctctttattggtggtaactctctattcatttttcctttttgaatctgtgattaatacaatccatttctaggctgtagaattttaaggttttagcggat  1878700                          <---------WOX13(1)                       <---------AHL20(2)                       <---------YAB1                      <---------AHL20(2)              --------->YAB1                 <-------TEIL                        --------->ICU4             <---------YAB1        ----------->GT1 --------->YAB1                  <---------At4g35610 <---------ARR14(2)   --------->AHL20(2)        --------->HSFB2a(2)   ---------->DOF2   gcaaatttgttgaatatgattcattttaattgaaaattggtaaatctcttctgtaatgatgttgtaagtcttgaaagttattttcttctgcgagctattc  1878800                                               <----------DOF2                                            <-----------GT1     --------->ZAT14              <----------DOF2               --------->ANAC58                 <---    <-----------RAV1(1)          <---------ANAC58               --------->ANAC46                 ----  <---------At5g28300            <---------ANAC58               --------->ANAC58                 <--- <-----------GT1                 <---------ANAC46             ---------->DOF2             <----------DOF2   tattcactgttgtccagtaaccatttcttctcatggctttgattttttactttgtgtttctcttcaaagccatgtttctgtgaaactttggtctttttgt  1878900                                                                                     --------->ICU4                                                                                   <--------ATHB1   <                                    ----------->RAV1(2)                            <---------ICU4   <            <------MYB83        <---------YAB1                                     --------->YAB1   - ------At4g35610      <---------AHL20(2)                                          <---------ATHB12 -- ----->At4g35610   ----------->GT1 ------->TEIL    <----------DOF2                <---------ATHB51 <- ------ZAT18<------MYB46(1)  --------->ICU4        <---------DAG2     <-----------GT1<---------YAB1<-   gctcacatgttgttcggtttgtagtaaattgattatgaacctgatgttctctactttctgaacattttgaatttacaatctccaataatgcttaattccc  1879000  Previous    Next  AGI:  At5g06200.1    Description:  integral membrane family protein. Identical to Putative UPF0497 membrane protein At5g06200 [Arabidopsis Thaliana] (GB:Q9FFZ7); similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT3G11550.1); similar to unknown [Striga asiatica] (GB:ABD98039.1); contains InterPro domain Conserved hypothetical protein CHP01569, trans-membrane plant (InterPro:IPR006459); contains InterPro domain Protein of unknown function DUF588 (InterPro:IPR006702) Range:  from: 1877334    to: 1878117    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g06210.1    Description:  RNA-binding protein, putative. similar to GR-RBP5 (glycine-rich RNA-binding protein 5), RNA binding [Arabidopsis thaliana] (TAIR:AT1G74230.1); similar to unknown [Picea sitchensis] (GB:ABK22008.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15865.1); contains InterPro domain RNA recognition motif, glycine rich protein (InterPro:IPR015465); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 1878472    to: 1879741    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version