Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        ----------->GT1                                   --------->TOE1(3)                               --------->GLK1(2)                             <---------ICU4                                        ------->TEIL                             --------->YAB1                                     --------->ANAC58                            <---------YAB1     --------->ANAC58          --------->ANAC58                            --------->ICU4     --------->ANAC58          --------->ANAC58                            <---------ATHB12 ---------->DOF2  --------->DAG2    --------->ANAC58      ---------->DOF2  --------->ANAC46 --------->DAG2       ---------->DOF2    --------->ANAC46   -- >ANAC58            --------->ANAC46   ---------->DOF2--------->MYB52(1) --------->ANAC46    -------- >ANAC46         ---------->DOF2   --------->TOE2(3)<---------MYB52(2) <---------ALFIN1      <------- >ANAC58      --------->TOE2(3)    <---------MYB59--------->WOX13(1) ----------->RAV1(1)<---------MYB52(1)   gagtgattcaaagctaacttaaaccccacaatgataacctaaaaagctaaagcaattaacagaaaaagaggcaacactcaacacgaacctgttatttaaa  1866000         --------->ANAC58         --------->ANAC58         -------->P       --------->MYB46(3)      <---------At4g35610          --------->ANAC55(2)      --------->At4g35610         <---------TOE2(3)                             ---------->DOF2     --------->ANAC46            --------->MYB52(1)                   ----------->GT1 ------->AHL20(2)      --------->ZAT14                                --------->LBD16 ->AHL20(2)            <---------ZAT14     ---------->DOF2           <---------LBD16     --------->AHL20(2) --AHL20(2)------->GAMYB       ------>ZmHOX2a(2)                    <---------LBD16   ----------->GT1   aaaaaatcagcaacccaagtttctctgctctgatctaacgtattcaaaagagaagagacataaaaacatatgcgggaaatagaaaagaagattaaaaatt  1866100                                                                                                    <                                                                                                   --                                                                                                 <---                                                                                               <-----                                                                                               <-----                                                                                              -------                                                                                    ------>MYB46(1)<-                  --------->ZAT18                          ----------->HVH21        ------>MYB83 ----                 <---------ANAC58                        <---------ANAC55(2)        --------->GLK1(2)                 <---------ANAC58 <---------MYB46(3)   --------->YAB1              --------->WOX13(1)                <---------------AtSPL8                 <---------ICU4        --------->LBD16------>ZmHOX2a(1)                --------------->AtSPL8    <---------YAB1 --------->ANAC55(2)<---------LBD16 =========                --------------->AtSPL3  --------->YAB1<---------ATHB12     ----------->RAV1(2)<------             ---------->DOF2     --------->ALFIN1   --------->WOX13(1)  <-----------HVH21   =========   gacgagaagaagagagaaagcgtacaagtttctcagtggtgagcataatagactcaatcatgtgacgaacacgatgtccctggaccaatctgtccttgct  1866200                                ------>MYB46(1)                              --------->AtMYB61                    ------>ZmHOX2a(2)          ================HOX2a_HOX2a     --------->ATERF1(1)     --------->MYB46(3)     <------NtERF2--------->ARR14(2)    <---------ATERF1(1)     --------->ANAC58    ------>NtERF2 <---------ARR14(2)    --------->ABI4(2)     --------->MYB46(3)    <---------MYB46(3)  <---------HSFB2a(2)   <---------DEAR3(1)   --------->HSFB2a(2)   --------->ALFIN1<------ZmHOX2a(2) ---------DEAR3(1)<---------ARR11(3) ------->SPL7     --------->ARR11(3) ------SPL7       --------->ARR14(3) ----ANAC58       <---------AGP1------>MYB83 ----ANAC58       <---------ARR14(3) -->ZAT2  =================HOX2a_HOX2a   -------->P --------ORA47(1)<---------CCA1(2)       ------>MYB46(1) ------->HVH21  ----------->ARR10<---------ATHB12            <---------WOX13(1)            ------>NtERF2 =========================HOX2a_HOX2a    ------>MYB83      --------->ATHB12               --------->ANAC46 ---ZAT2  ------>ZmHOX2a(1) --------->ANAC58    <-----------GT1                  <------ZmHOX2a(1) ==========================HOX2a_HOX2a <---------ALFIN1   <---------YAB1      <---------HSFB2a(2)  <-   ggacggtggctccttctgtagatcttccacaaccaatcgctccaacctttcaacctcttcgtgattggagcgagtttgctcgaggagagtcgacgacatt  1866300                                                                                       --------->ANAC58                                              --------->TOE2(3)                        --------->ANAC58                          ------>ZmHOX2a(1)   --------->TOE1(3)          ------>ZmHOX2a(1)                   <---------GLK1(1)<------NtERF2                  <----------DOF2     --------->ANAC46            --------->HSFC1(2)     --------->LBD16            <----------DOF2     --------->GLK1(1)            <---------HSFC1(2)    --------->DEAR3(1)          <---------DAG2    --------->LBD16 ----------GT1<----------DOF2    <---------LBD16        --------->ANAC46--------->TOE2(3)  ----------   ttctctgtcttcgaagctttgaaatctccttcttcgccggagtctaaaccctaaattccagtcacttttcttttcctcaatccgaaatctcgccagtaaa  1866400                                   <------MYB46(1)                                   <---------MYB46(3)                                   <------MYB83              --------->LBD16     *TSS    <XXXXXXXXXXXXXXXXXXXXXMIR850          --------->ARR14(2)      --------->ALFIN1          <---------ARR14(2)      <---------AtMYB61     --------->ANAC46            <---------MYB52(1)     <---------MYB46(3)     --------->ANAC58    <---------ARR11(3)             <---------ANAC46     --------->ANAC58    --------->ARR11(3)      <---------ANAC46   <-----------GT1   ---------->DOF2     <-----------RAV1(1)---------->DOF2        <----------DOF2 ->GT1   --------->WOX13(1) --------->GLK1(2) <---------AtMYB61  --------->RAP2.6(2)   atttttaacgccaatccgagagaaaaagataatcgggtggtttttgttgtggtttgggtcgtttaagccgaactatgttttgggcctttttagacggttt  1866500                                                                                 <---------ICU4                                                                                --------------->AGL15                                                                                --------->ICU4                                                                               --------->ANAC55(2)                                                                             <-----------GT1                                                                          <---------YAB1                                                                         <---------AHL20(2)                                                                     <---------ICU4          <-------                                                                     --------->YAB1          --------                                                                    <---------YAB1           --------                                                                 --------->AHL20(1)         ---------                     <---------MYB52(1)                          --------->AHL20(2)       --------->AHL20(2)                    <-------GAMYB                                <---------AHL20(2) --------->YAB1                   <---------ZAT6   <----------DOF2     <----------DOF2<---------YAB1 <---------YAB1         <----------DOF2 <---------ZAT6        <----------DOF2   <---------AHL20(1)<---------YAB1  --   gtgttttaggcctttttttgactgttagtgttttgggcctttttagactcttttttttcttttatattttattattattttacttattataaaaaaatct  1866600                                        <------ZmHOX2a(2)                         --------->ATHB51------>ZmHOX2a(2)     <---------AHL20(2)                         <---------ICU4<-----------ARR10      --------->AHL20(1)                         --------->AHL20(2)         ----------->GT1        --------->ATHB12        <-                         <---------AHL20(2)         <------MYB83 <---------AHL20(2)     -------------    ----------->GT1     <---------YAB1 <---------ARR11(3)     <---------AHL20(1)        <------------ --ARR11(3)             --------->ICU4 <---------AGP1      --------->AHL20(2)          <------------- ->GLK1(2)         <------MYB83 <----------DOF2     <------MYB46(1)       <---------YAB1<----------DOF2 ->ARR11(3)        <------MYB46(1)     --------->ARR11(3)  <---------AHL20(2)         ------>ZmHOX2a(1) >RVE1(1)  <-----------GT1   <---------AHL20(2)  <---------MYB52(1)     <---------At4g35610        -- ------->YAB1      ----------->GT1     --------->AGP1     <---------AHL20(2) <---------WOX13(1)    <-   ataatatggtaaaataccatttggtaattattttcttttaagatctattccatttggtaatttatatattttttatctgattgcaatcctcttttaatgg  1866700             <---------ANAC55(1)        <---------ICU4        --------->YAB1       <---------ATHB12                                              ------->GAMYB --------ARR14(2)                                                 <---------DOF5.7(2) -->AGL15    --------->ANAC55(2)                                  --------->MYB52(1) ---AGL15    <---------ANAC55(2)   <---------ZAT14              --------->DOF5.7(2)        --------->AHL20(2) ----AGL3    <---------ANAC46  <-----------GT1   <-------TEIL<---------ARR11(3)      ----------->GT1 ------->ARR14(2)           <---------------AtSPL8           --------->ARR11(3)<---------------AtSPL8 --------KAN4(2)            --------------->AtSPL8       ---------->DOF2       <---------------AtSPL3   gaatactcaaacattatgtgtttgtttgatattgtactatacttcaatgggttcatttgcaaagatgttaacggagagaaggttgtacagaaaaaaaatg  1866800             --------->MYB46(3)            ------>MYB46(1)            ------>MYB83          ------->GAMYB                                                 ---------->DOF2          --------->AtMYB61   --------->YAB1                     <---------ICU4         --------->MYB46(3)<----------DOF2                 --------->ANAC58               --------->ANAC58       <-----------GT1    <---------ANAC58                 --------->ANAC58               --------->ANAC58   --------->ZAT14 <---------YAB1                --------->ZAT6 --------->ICU4            --------->ANAC46 <---------At4g35610      <---------ANAC46     --------->MYB52(1)--------->ATHB12 ----------->GT1<--- --------->At4g35610      <---------ANAC58   <---------MYB52(2) <---------YAB1---------->DOF2   -----   ggcagtttacaaccatccactatgaatggctttgatattggtagcaaactaacacaaaatcaagtcatcattgtcaaagttaaagagttaacaagccatt  1866900  Previous    Next  AGI:  At5g06160.1    Description:  splicing factor-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO48518.1); contains InterPro domain Zinc finger, C2H2-type matrin; (InterPro:IPR000690); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain ATPase, F0 complex, subunit F6, mitochondrial; (InterPro:IPR008387) Range:  from: 1862370    to: 1866434    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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