Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->ANAC58                <---------ARR14(2)                --------->ARR14(2)              --------->LBD16             --------->ANAC55(1)             --------->ANAC46                                                --------->ANAC58             --------->ANAC55(2)                                             --------->ANAC58             <---------ANAC55(2)                                          <---------MYB52(1)         --------->ARR14(2)          <---------ANAC46                    ------>NtERF2   --------->DAG2      --------->ANAC46                                  --------->LBD16  ---------->DOF2      --------->ANAC58      <-----------GT1    <---------TOE1(2) -----DOF2<------ZmHOX2a(2)        --------->ARR14(2)  <---------LBD16 <---------LBD16 ----DAG2<---------ARR14(2)  <-----------GT1 --------->YAB1    ------>ZmHOX2a(1)               ------   ttcaaaaagccgatcccgtaaccagacgaaatcactgtatcgtctaataacaatcttctcgggtccttggtactccggcaagttagtctgccaaaaaaaa  1858400                                                                            --------->At4g35610                                                          ------->GAMYB     <---------At4g35610                      ------>ZmHOX2a(1)                 -------->P     <---------At4g35610          -                     --------->TOE1(3)             --------->YAB1      --------->At4g35610          -                     --------->TOE2(3)          --------->TOE2(3)   <---------ZAT2                ---       <-----------HVH21                        --------->TOE1(3)   <---------At4g35610        ------ --->AHL20(2)       ------>ZmHOX2a(2)           --------->YAB1 --------->GLK1(2)               ------   aatccaatttgtcagaaattgatccttagataaactaattcacaacaaaaccataatcaacccaaattctagctgctcagcatacaattagatagtttcg  1858500 ----------->RAV1(1)              --------->ANAC58                          <-----------RAV1(2) -------->MYB46(3)              <-----------GT1                           --------->GLK1(2) -------->REM1(1)  --------->YAB1 --------->ANAC46                  --------->TOE1(2) -------->RAV1(1) --------->KAN4(1)                               --------->ANAC58               ---- --->ANAC58       <---------KAN4(1)    <---------DAG2             --------->ANAC58        <------ZmHOX2a(1) --->ANAC58      <---------KAN4(2)--------->ANAC58              ---------->DOF2          ----------->GT1   caacaacaaaaaatcagcgaataatcttctgttatcacccaatttttcaaatagaaaccctagactgaaagctacgaatcaggttccaagaaggataaac  1858600                                                           ----------->HVH21                                                          <-----------HVH21      --------->ARR14(2)                                                       <------ZmHOX2a(2)         <---------ARR14(2)                                                      <---------ARR11(3)      --------->ANAC55(2)                                --------->ANAC46      --------->ARR11(3)     <-------TEIL                                --------->ANAC58      --------->GLK1(2)      <---------LBD16    <----                                --------->ANAC58      --------->ARR14(2)    --------->CCA1(2)   -----                               --------->SPL7  ----------->HVH21            --------->ARR14(1) ------                           <---------------AtSPL3     <---------ARR14(2)   --------->ARR11(1)  ------                           --------------->AtSPL8     <---------AGP1       --------->ARR14(2)  ------                           <---------------AtSPL8    <---------GLK1(2)     <---------ARR14(2)  <-----                    --------->CCA1(2)    <---------MYB59------>ZmHOX2a(2)  <---------GLK1(2)   <-----                   ----------------------->TaNAC69(2)<------ZmHOX2a(1)--------->MYB52(1)      -------                   <---------ARR11(3)   ----------------->AGL1       ----------->HVH21        <------ ----->TOE2(3)     --------->ARR11(3)   ----------------->AG  <---------ANAC46<---------ANAC55(2)----   cttggtgataactctgtaagagatataagcttgtacgccattgcctaatttgacaggatctgtgacggagactgacagatacggatgcgaagacggagat  1858700                                         --------->ZAT14                                         <---------ZAT18                                      <---------ANAC46                                      <---------ANAC58                                      <---------ANAC58                                  --------->ZAT2                                  <---------At4g35610                                  <---------ZAT2                                  --------->ATERF1(1)                             <---------DEAR3(1)        <---------AtLEC2    ------>ZmHOX2a(1)  --------->ZAT18           <---------LBD16 --ZmHOX2a(2)        <---------ARR11(3)  <---------ZAT14                         ----------->GT1 ---->CCA1(2)        --------->ARR11(3)--------->LBD16                          --------------------- --->AGP1        --------->LBD16  --------->At4g35610                     <-----------HVH21 --->ARR14(2)  <---------LBD16   <---------ATERF1(1)                      --------->LBD16 --->ARR11(3)  ====================HOX2a_HOX2a                           --------->O2 ----ARR14(2)  ------>ZmHOX2a(2)<---------DEAR3(1)                      <---------LBD16 ----ARR11(3) =====================HOX2a_HOX2a                         ------->GAMYB -->GLK1(1)  --------->ARR14(2)<---------ZAT2                        -------->P <------ZmHOX2a(2) ---GLK1(1)  <---------ARR14(2)--------->At4g35610               <-----------ARR10 -->ZmHOX2a(2)<------ZmHOX2a(2)<---------At4g35610               --------->GLK1(2)    *TSS     ------   ctagggctctgcatcgatccggagatgttcctcggctgctccgtgctctccatgagacaacaacgagaatcaaccccgtgagatcgaaaaaaaaaaaaaa  1858800                                                                               <-----------GT1                                                                             <---------MYB52(2)                                                                            --------->ANAC58                                                                            --------->ANAC58                                                                            <---------ANAC55(2)                                                                        --------->ANAC46                                ----------->GT1                         --------->ANAC58                             <---------ARR14(2)                         --------->ANAC58                             --------->ARR14(2)                    <---------ZAT18                       <---------ZAT6--------->ICU4                --------->ZAT14                 --------------->AGL15   <-----------GT1           <---------ZAT14      ---------->DOF2 --->ANAC81     <-----------------AGL1<---------ICU4        <----------DOF2 --------->ANAC55(2)  ---- --->MYB52(1) <-----------GT1<---------GLK1(2)    <---------ANAC46 --------->ZAT18--------->TOE2(3)   cgatttagtcaaaaattcacctctagtggcagatttgtaatattcacgagttttgtgttcaactttcggtgcacaagtaagtaacctttgaaaagagaaa  1858900                                                                                                    -                --------->TOE2(3)                                                                 <--                --------->TOE1(3)                                                               <----                <----------DOF2                                                                ------       <---------RVE1(1)                                                                       <-----      <---------GLK1(2)                         <----------ID1                              ---------      --------->ARR11(3)                      <-----------GT1                               <--------   --------->YAB1                        --------->ICU4                                 <<<<<<<<<RAP2.2 ------->GT1 <-----------GT1          ---------->ID1                    --------->AHL20(2)--------->CCA1(2)   ggttatcagattttttaactttaaaccaaaatttcattttgtcatatttaacaacaaaatttgatgaaattagataaattagttcgttttagatatgatt  1859000 <---------TOE2(3) --------->DOF2 -------YAB1                     --------->ANAC58                               --------->ZAT6 -----ICU4                       --------->ANAC58    ---------->DOF2       <----------DOF2 --->ICU4                    --------->YAB1--------->ATHB12                <---------DAG2 ----YAB1              --------->YAB1     <---------TOE2(3)             <-----------GT1      <------- >ICU4   --------->GLK1(2)   --------->ATHB12   <----------ID1         <-----------GT1   <---------GLK1(2) -YAB1  <---------GLK1(2)   <---------YAB1<---------YAB1       ----------->GT1  <-----------GT1    --   attaaagatagattcttgacaaaaattagaatgataagacacttaagattgggacaaaagaaaaatggaaattttaactttttcactactagattatgaa  1859100               <-----------GT1            --------->YAB1           --------->AHL20(2)           <---------AHL20(2)                --------->YAB1      --------->YAB1                      <----------DOF2                  <---------ANAC55(2) --YAB1   --------->AHL20(2)           <---------YAB1    <---------MYB52(1)----------->GT1 ------->AHL20(1)--------->ZAT6  ---------->ID1     <-----------GT1    --------->GLK1(2)   atatactatcaaattaataacactactagtattttgtagttatgctttcaaaataaaccggtttttagtggataatctcgtaaaaatatgctatattaga  1859200                                                                      --------->ANAC46                                                                    <-----------GT1                                                          --------->ATHB51                                                    --------->TOE2(3) --------->ANAC58                                            --------->YAB1<---------ICU4                                           <---------ATHB12      --------->ARR14(2)                                        <---------AHL20(2)--------->ATHB12                                        --------->AHL20(2)-------->HAHB4                 --------->REM1(1)     <---------AHL20(2) <--------ATHB1                       ------              --------->TOE1(3)        --------->AHL20(2)--------->AHL20(2)       <-----------GT1              --------->TOE2(3)     --------->AHL20(2)   <---------AHL20(2)    --------->TOE2(3)      --------->TOE2(3)            --------->AHL20(2)    <---------ATHB51      --------->TOE1(3)    <---------YAB1                 <---------AHL20(2)  --------->YAB1 --------->ANAC58   <---------AHL20(2)   gtagttttcattaaaaccttcatctctagtttaaaaaataaataaatcataaaacataaataattgggattcacgatataacattaactattttatgcat  1859300  Previous    Next  AGI:  At5g06140.1    Description:  phox (PX) domain-containing protein. similar to phox (PX) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G07120.1); similar to sorting nexin 1 [Brassica oleracea] (GB:CAD29576.1); contains InterPro domain Phox-like; (InterPro:IPR001683); contains InterPro domain Vps5 C terminal like (InterPro:IPR015404) Range:  from: 1856009    to: 1858786    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g06150.1    Description:  CYC1BAT (CYCLIN B 1;2); cyclin-dependent protein kinase regulator. Identical to Cyclin-B1-2 (CYCB1-2) [Arabidopsis Thaliana] (GB:Q39067;GB:Q9FG02); similar to CYCB1,3 (CYCLIN B1,3), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT3G11520.1); similar to mitotic cyclin [Sesbania rostrata] (GB:CAA99990.1); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Cyclin, A/B/D/E (InterPro:IPR014400); contains InterPro domain Cyclin, N-terminal (InterPro:IPR006671); contains InterPro domain Cyclin-like (InterPro:IPR011028); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367) Range:  from: 1859280    to: 1861650    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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