Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   <---------At4g35610                                                                               ================RAV                                                                               <-----------RAV1(2)                                                                          <---------RAP2.3(1)                                                                       --------->MYB52(1)                                                                      ----------->HVH21                                                                      --------->DEAR3(1)     --------                                                                      ------->GAMYB<-----------RAV1(1)                                                                     <---------MYB55(2)    --------->SPL7                                                                     --------->MYB46(3)   <---------ATERF1(1)                                                                     --------->DEAR3(2)  --------->DEAR3(1)                                                                    <---------At4g35610 --------->ATERF1(1)                                                                    --------->At4g35610------>NtERF2                                                                  <---------WRKY38(1)  <---------ATERF1(1)                                                                 --------->WRKY18(1)<-----------HVH21                                                                <-----------HVH21--------->At4g35610                                                          --------->KAN4(2)  ------>NtERF2------>NtERF2                           --------->ARR11(3)            <---------KAN4(1)<---------ATERF1(1)------>NtERF2                           <---------ARR11(3)            <---------HSFB2a(1) <-----------HVH21                          --------->At4g35610            --------->HSFC1(2)--------->RAP2.3(1)------>NtERF2      ---------->DOF2<---------HSFB2a(2)                 --------->HSFB2a(1)<---------bZIP60(1)------ ----------ATHB5   <<<<<<<<<<AtWER                       <---------HSFC1(2)<------NtERF2<------NtERF2 ------ATHB1     --------->At4g35610                     --------->KAN4(1)------>NtERF2<---------RAP2.3(1) ------>ATHB12<------ZmHOX2a(2)     <---------AtMYB61   <---------KAN4(2)<---------DEAR3(1)<---------LBD16 ----->ICU4  --------->ARR14(2) <----------DOF2--------->At5g28300<---------WRKY12 <---------REM1(1) ------ATHB12<---------ARR14(2) <---------DAG2----------->GT1  --------->LBD16<------NtERF2--------->ATERF1(1)   tgattcgaagaagcggatcagttggagaagctctctttttggtcgatgtggtaaatggaacattccggtcaaccgacggcgtcagatgtcgcctccggcc  1807800                                                                         ----------->HVH21                                                                      <---------LBD16                                                                   <---------HSFC1(2)                                                                   --------->HSFC1(2)                                                                   <---------At4g35610                                                                   <---------ZAT2                                                                   <---------HSFB2a(1)                                                                   --------->ZAT2                            ---------->DOF2                        --------->At4g35610                          --------->ANAC58                        --------->GLK1(2)    ------>NtERF2         --------->ANAC46                --------->MYB52(1)   --------->ZAT18        --------->ANAC58     <---------ARR11(3) <-----------ARR10      <------NtERF2 --------->At4g35610    <---------DOF5.7(2)   <---------ATHB12  ---------->DOF2<-------TEIL ->LBD16     ----------->RAV1(1)   ----------->GT1      --------->MYB46(3)   <---------SPL7 ----------->AGL1 --------->ICU4--------->MYB52(1)      <---------MYB52(2)  <---------ANAC46  <------   agaagcggactggtccaacaatgagtaaacgaaagaacggtttttccaataacttcccacaaaccgagaagctgcgcgacgtacaagagtcgccattttt  1807900                                               ----------->GT1                                              <---------TOE2(3)                                              <---------TOE1(3)                                          <----------DOF2                                        <---------------AGL15          ==============================================MADS_MADS          <---------------AGL15        <-----------------AG                            <---------AHL20(2)        *TSS                           <-----------------AGL2                          --------->AHL20(2)        --------->At4g35610            <-----------------AGL1              <---------ANAC58        <---------At4g35610            ----------------->AGL1              <---------ANAC58    <---------REM1(1)   --------->ALFIN1--------------->AGL15             <---------LBD16  <---------ICU4 ---AHL20(2)  <------------CBF       <-----------GT1            <-----------GT1    --------->AHL20(2)   tttgtgttgaagctcaaattggaagagtgagggtttttatttccctttagggtttaatatagcaaattacaaatttagcgggacttaaattaaaaatcac  1808000           ----------->GT1        --------->ARR14(2)   <---------ARR14(2)                                     --------->TOE2(3)       <------ZmHOX2a(1)  <-----------------AGL1                              --------->ANAC46    <---------ICU4        ----------------->AGL1                       --------->TOE2(3)     <-------  --------->GLK1(2)   <---------ANAC55(2)          --------->ANAC46   <-----------------AGL1 <-------   agaaaatcaggaccggctaaaaatacgggccaatatgggcctagtggcccattacgacattaagagaccgtttccataatccgaaaccctagtttgcttc  1808100                                                   >>>>>>>>>RAP2.2                                                   *TSS                                                 <-----------ARR10                                                 --------->ARR14(2)                                                 <---------ARR11(1)       <---------MYB46(3)        ------->TEIL    <---------ARR14(2)       <-----------RAV1(1)     ------->GAMYB     <---------ARR11(3)            --------->ANAC58    --------->MYB52(2)    <---------MYB52(2) <------NtERF2                     --------->ANAC58 <----------DOF2   <-----------GT1        --------->At4g35610                <-----------GT1      --- --ANAC58     <----------DOF2 <---------MYB52(2)--------->GLK1(1)        <---------WOX13(1)       <-- --ANAC58    <---------DAG2 --------->MYB52(1)  <---------CCA1(2)       <-------GAMYB          ------   tgtctttagttgttgccttttaaactaaactaacgaacttaataagcggcatatctaaatctgagaaaaatggcgattgatacgatacaaaaaacaaaaa  1808200        ----------->GT1       <------NtERF2      --------->MYB55(2)                                        --------->ATHB12      <---------MYB46(3)                                       <---------YAB1     --------->ALFIN1                                        --------->At4g35610  <---------DEAR3(1)                    --------->GLK1(1)    <---------At4g35610   ----------->GT1 ------>HSFC1(2)                ------>NtERF2       --------->LBD16      --------->LBD16         ---- -------HSFC1(2)        >>>>>>>>>TBF1   <---------GLK1(1) <---------At4g35610   --------->MYB52(1) <- ---->DOF2        <---------TOE2(3)  <---------YAB1 ------>NtERF2      <---------LBD16  ---------->DOF2   agcttcggtggggagaaattgacgaagaagaaggcgactatgatttccttcttccgcctaagcagatgattagtccggaccagaacggtgtaaagaaggt  1808300                                                                                     --------->LBD16                                                                                    <---------ANAC58                                                                                    <---------ANAC46                                                                                    <---------ANAC58                                                                              <---------ATHB12                                                                             ------>MYB83                                                                   --------->At4g35610 --------->REM1(2)                                                            <---------At4g35610---------->DOF2    ---                                                       --------->REM1(2)     ------>MYB46(1)      <--                              <----------ID1        --------->ANAC55(2)    <---------MYB46(2)     <--                              ----------->GT1       <---------ANAC55(2)    --------->MYB46(3) <------                             --------->DAG2     <---------ALFIN1   --------->ZAT2--------->ANAC58 --- --------------->AtSPL8     --------->DAG2     --------->ANAC58    <---------ZAT2--------->ANAC46<--- <---------------AtSPL8    ---------->DOF2     --------->ANAC46    <---------At4g35610--------->ALFIN1 ----->ATHB12         <------ZmHOX2a(1)        --------->ANAC58  <---------ZAT18 --------->ANAC58---- --------WOX13(1)    <----------ID1    <---------ICU4--------->LBD16      --------->ANAC46 ----------   gattgagtacaaattcaacgaagaggacaaaaaggtcaaaatcactaccacgacccgtgttcagaagcgagctctcaccaaacaagccgtggagcgacgg  1808400                                                                     <---------ARR11(3)                                                                     --------->ARR11(3)                                                                    <---------GLK1(1)                     --------->ZAT2                                 --------->GLK1(1)                     <---------At4g35610                           --------->ARR11(3) ------>At4g35610    <---------ZAT2                                <---------ARR11(3) -------At4g35610    --------->At4g35610                           <---------ARR14(2)               - -------ZAT2        ------->TEIL--------->GLK1(2)                  --------->ARR14(2)           ----- ---DEAR3(1)     --------->ANAC58         <-----------GT1         <------ZmHOX2a(1)            ------ ------>ZAT2  <---------ARR14(2)<---------ARR14(2)    <---------ANAC58                         ------ ------ARR14(2)  --------->ANAC58      <---------MYB46(3)     ------->GAMYB                  -------- ----->ARR14(2)  --------->ANAC46    <---------MYB52(1)    ----------->RAV1(1)            <---------At4g35610 ->HVH21      --------->ARR14(2)--------->ARR14(2)    <---------ANAC58                    <---------GLK1(1)   agctggaataagttcggagacgcagctcatgaagaatccagtagttacctcacaatgcgttcaacagaggatatcatcttggaacgaattagagctcctg  1808500                                        <---------YAB1                                  <-------TEIL                     <------NtERF2                                --------->ARR14(2)                <---------MYB46(3)  <---------ARR11(3)            <---------ARR14(2)                ----------->GT1  --------->ARR11(3)            <---------GLK1(2)                <---------DEAR3(1) ---------->ARR10              <------ZmHOX2a(1)                 --------->ALFIN1 ------>GT1                   <---------YAB1                   <---------ANAC58             <-------- >ZmHOX2a(1)             <---------MYB46(3)                    <---------ANAC58             <-------- --->LBD16 <----------DOF2 <<<<<<<<<MYB98  <---------YAB1--------->ATHB12          --------->ANAC55(2) --->RAV1(2)          ------------>MYB.PH3(2)           <---------YAB1         <-----------HVH21   gtaaaatcttcaactttgcattttagtttgttaggattcgttgttattatgctctgttttgattagggtggctaattagccagtcacatgttagctttat  1808600                                                  <---------MYB46(3)                                               <---------MYB46(3)                                               <------MYB46(1)                                               <------MYB83                                              <---------DEAR3(1)                                           <---------ANAC58               <-----------ARR10                         --------->At4g35610 <---------MYB52(1)          ============================                        --------->ANAC58   <---------ANAC46              <------ZmHOX2a(1) --DOF2                 --------->ANAC58   <---------ANAC58         <<<<<<<ZML2 -DAG2   <---------ANAC46<---------At4g35610<-------GAMYB     --------->ZAT6  <-----------GT1      <-   ggctactgtttgtgtgaatggtcagtaagcacacctatagcaatgtcgttggtgattcgtttcaacactagaacaggatttaacccagtttttggttatg  1808700  Previous    Next  AGI:  At5g05990.1    Description:  mitochondrial glycoprotein family protein / MAM33 family protein. similar to mitochondrial glycoprotein family protein / MAM33 family protein [Arabidopsis thaliana] (TAIR:AT3G55605.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69135.1); contains InterPro domain Mitochondrial glycoprotein; (InterPro:IPR003428) Range:  from: 1806762    to: 1807908    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g06000.1    Description:  EIF3G2 (eukaryotic translation initiation factor 3G2); RNA binding / translation initiation factor. similar to EIF3G1 (eukaryotic translation initiation factor 3G1), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT3G11400.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69138.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Translation initiation factor 3, RNA-binding subunit (InterPro:IPR0173 Range:  from: 1808151    to: 1809854    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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