Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <---------ANAC46                          <---------AtMYB61                        <------MYB83                        <------MYB46(1)           --------->DEAR3(1)                       --------->MYB111(2)       <------NtERF2                       <---------MYB46(3)       <---------At4g35610                 --------->ALFIN1              --------->TCP20               <------MYB83  --------->ALFIN1  <---------PCF2               <------MYB46(1)                 --------->TCP16(1)              --------->MYB111(1)     <---------ZAT6              <---------MYB46(3)      --------->ICU4                                              ---              --------->MYB111(2)<------MYB46(1)--------->At4g35610                               ---              --------->MYB46(2) <------MYB83 --------->ATERF1(1)                               -----      <------ZmHOX2a(1)--------->MYB55(2)   --------->ALFIN1                               <---------At4g35610 ----->DOF2   --------->MYB55(2)<---------AtMYB61--------->ATERF1(1)      ----------->HVH21--------->At4g35610 >TOE1(3)    <---------MYB55(1)<--------P <---------MYB46(3)    <---------ARR14(2)       <------NtERF2 >TOE2(3)    <--------P--------->ALFIN1  <---------AtMYB61     <------ZmHOX2a(1)  ---------->DOF2 ---   aagagagaggagatggtaggtgaggctggtggtgttggtagtgatggtggagccgaagagtgagaggaatcgagagttgacagagaaaggcagagctcaa  1804400                                                                         <---------DAG2                                                                         <----------DOF2             <---------TOE1(1)                                          <---------ANAC58         <---------MYB46(3)                                  --------->REM1(1)               --------        --------->ALFIN1                                 <------------------------ANAC81     *TSS ------>ANAC58                                      <---------YAB1      <---------ANAC58   <---------LBD16 ------>ANAC46                     <---------ATHB12 <---------TOE2(3)  <------------------------ANAC81 ---->MYB52(1)             <---------ARR14(2)    <---------MYB52(2)<----------DOF2    <----------DOF2 ------>ANAC58             --------->ARR14(2)  --------->ZAT6<---------ALFIN1    <-----------GT1   acggcacgatgtggttcgaggtactatcgaaactgcaaacattctcttgtcactaacattgctacacttcttttgctttttgtttactctttttcggcaa  1804500                           <----------ID1                           ----------->GT1               ------>NtERF2             <------NtERF2------------------------>ANAC81             --------->RAP2.3(1)            <---------ORA47(2)                                                      <---------AHL20(2)            <---------ATERF1(1)                                                    <---------AHL20(2)            <---------DEAR4(2)                                                     --------->AHL20(2)            <---------RAP2.3(1)                             ------------>CBF   ------>ZmHOX2a(1)           <---------RRTF1(3)                          --------->ZAT18        --------->TOE2(3)   <--           <---------DEAR3(1)                        <---------ZAT18     --------->At4g35610     <---       ---------->DOF2---------->DOF2          --------->MYB52(1)        <---------At4g35610 -------- ---->CBF  <---------RAP2.3(2)   ------------------------>ANAC81        <---------TOE1(3)    --------   tttgttgacgaaagcggcgcatcacaaagacgaaaaaaaaaaaaaaaaaaaacagagcgcatcacaattttgttaagcttccttattaaatacaaactta  1804600                               <-------GAMYB                              <---------DEAR3(2)                        --------->ZAT14                        xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        xxxxxxxxxxxxxxxxx>smallRNA(fl3)                       xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       <---------ANAC46                       <---------REM1(1)                     <---------ANAC46                     xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     <------MYB46(1)        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    --------->ALFIN1  --------->ANAC58                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    <---------DEAR3(1)--------->ANAC46                    <---------AtMYB61 --------->ANAC58                  xxxxxxxxxxxxxxx>smallRNA(se3)                 xxxxxxxxxxxxxxxx>smallRNA(s)                 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 xxxxxxxxxxxxxxx>smallRNA(fl3)                 xxxxxxxxxxxxxxxx>smallRNA(fl3)                 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxx>smallRNA(se3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxx>smallRNA(se3)                            <---------LBD16                 xxxxxxxxxxxxxxx>smallRNA(se3)                            xxxxxxxxxxxxxxxx>smallRNA(s)                 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   <---------LBD16                 xxxxxxxxxxxxxxx>smallRNA(si3)                           xxxxxxxxxxxxxxxx>smallRNA(i)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    xxxxxxxxxxxxxxxx>smallRNA(s)                 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 xxxxxxxxxxxxxxxx>smallRNA(s)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxx>smallRNA(i)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxx>smallRNA(s)                 xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    xxxxxxxxxxxxxxxx>smallRNA(s)                 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxx>smallRNA(i)                 xxxxxxxxxxxxxxx>smallRNA(le3)                  <---------TOE1(2)                 xxxxxxxxxxxxxxxx>smallRNA(si3)                 --------->LBD16                 xxxxxxxxxxxxxxxxxx>smallRNA(le3)              <---------LBD16                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <------NtERF2                 xxxxxxxxxxxxxxxxx>smallRNA(le3)            --------->PCF5xxxxxxxxxxxxxxxx>smallRNA(i)                 xxxxxxxxxxxxxxxx>smallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <-----------HVH21--------->LBD16                 xxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ANAC46  xxxxxxxxxxxxxxxx>smallRNA(i)                 *TSS<------MYB83xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(s)        --------->AHL20(2)    <------MYB46(1)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        --------->YAB1xxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxx>smallRNA(si3)    --------->AHL20(2)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(si3)    <---------AHL20(2)xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxx>smallRNA(le3)   --------->AHL20(2)xxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------AHL20(2) -------WOX13(1) xxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------ALFIN1 xxxxxxxxxxxxxxxx>smallRNA(i)    === ---------CBF   xxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxx>smallRNA(s)------>NtERF2   <------- ->YAB1 <---------AHL20(2)    <------MYB83  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        --------->AHL20(2) ->TOE2(3)---------->DOF2  xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(s)   <--   attgaattaataaaaagtctgggtggtgtagtcggttatcacgctagtctcacacactagaggtccccggttcgaacccgggctcagacatttttttact  1804700                                                 --------->ZAT14                                                 <---------ZAT14                                                 <---------ZAT18                                                 --------->ZAT18                             <---------PCF2  ------->MYC2                          --------->ALFIN1   <-------MYC3                         ------->PIF4        ------->MYC3                         <-------MYC3        <-------MYC2                         <-------MYC4        <-------MYC4                         ------->MYC4        ------->MYC4                         ------->PIF5       --------->TGA1a                                         <                         <-------PIF5       <---------O2                                            -                         ------->MYC3       --------->O2                                       ------                         <-------MYC2       ========================================bZIP_DOF --------                         ------->MYC2       <---------TGA1a                                  <-------                         <-------PIF4       <---------ANAC55(2)                    --------->LBD16  -                        <---------O2  --------->ANAC58                           <---------LBD16    -                        <---------TGA1a    ------------>OsbHLH66                --------->MYB52(1)---                        --------->TGA1a   <------------OsbHLH66                --------->MYB52(1)<--- =================================bZIP_DOF<---------ALFIN1                 --------->ANAC58 ------>MYB46(1) ----GT1                --------->O2  --------->ANAC58                     --------->ANAC58 ------>MYB83 --------DOF2          ------------>OsbHLH66--------->ANAC55(2)          ---------->DOF2  <---------MYB59   cttttttttgggattttttagtttgcacgtggggactcactcgcacacgtgtgtactaatctccatttcttaggcaaaagcaaaccggagaaccaaacaa  1804800     *TSS     ----------->GT1     <---------ANAC46   <---------ARR14(2)   ------->TEIL                                                                          <---------WRKY12 ---------ANAC55(2)                                                          --------->CCA1(2) -------->ANAC58                                                            <---------ARR14(2)     <- --->WOX13(1)                                                               <---------ARR11(3)     -- ---->CBF                                                                   --------->ARR11(3)     -- --ATHB12                                        ------------------------>ANAC81 --------->ATHB12  -- -------->ANAC58                          <----------DOF2                   --------->ARR11(1)     <- -------->ANAC55(2)                <---------ARR14(2)                       --------->ARR14(2)   <--- ------>YAB1                       --------->ARR14(2)                     ----------->ARR10     <---- ------ATHB12--------->YAB1    --------->HSFB2a(2) <------ZmHOX2a(1)<---------ANAC46     <---------WRKY38(1)   tcacgaatcgtgtaatcaaactcatcggagtctctcgaattcgtctttgaagaggaagagaagagaagaggcgagggagatatggattgggacaacgtag  1804900                                                      <---------MYB46(3)                                                      --------->MYB52(2)                                                     <---------TOE1(2)                                                    <---------MYB52(1)                                                 ------>ZmHOX2a(1)                                              ------>NtERF2                                             --------->DEAR3(1)                                            --------->ATERF1(1)                                          --------->ANAC46                                          --------->ANAC58            <---------WOX13(1)            --------->ANAC58          --------->ATHB12                --------->DEAR3(1)                     <---------ANAC58         <---------YAB1                  --------->ATERF1(1)                     <---------ANAC58     <------ZmHOX2a(1)                  <---------ATERF1(1)                 <---------GLK1(2)   <---------TOE2(3)                   <---------DEAR3(1)                   --------->ARR14(2) --------ZAT2                          <---------ETT(2)                     --------->ARR11(1)    <-- ------->At4g35610                     --------->ETT(2)      <---------ANAC58 <-------TEIL        --- --------->RAV1(2)                     <---------WRKY38(1)   <---------ANAC46--------->ARR14(1)  ---- ------->ZAT2                          <---------WRKY12      <---------ANAC58--------->CCA1(2)   <--- --------At4g35610           ----------------------->TaNAC69(2)  <---------ARR11(3)              <--- --------RAV1(2)        <---------HSFB2a(2)<---------ATERF1(1)   --------->ARR11(3)              <--- -----At4g35610         --------->HSFB2a(2)------>NtERF2<---------MYB52(1)  <---------ARR14(2)<------   cagctgaggatgtgattgaggcgcttagagaagttgaatggtcgacgcctcctcgttcgtttggcgagttcttctctagattcgcgttccctcgctcttt  1805000              <---------RAP2.6(3)             --------->DEAR3(1)             --------->RAP2.3(3)             --------->RAP2.3(2) -------------AGL15                                                                            ------ ------------>AGL15                                                                          -------- ------------->AGL2                                                                  <---------YAB1 --------------AGL1                                                            <------ZmHOX2a(1) --------------AGL2                     <-----------GT1                        ====================== --------------AGL3                  <---------ZAT6                      --------->ETT(2)    <------- ----DOF2   <-----------------------TaNAC69(2)      <----------DOF2   <---------ANAC46 --------->ARR11(3)   ctctaaatggaagagccgtctcaaatgcaatctctactagtattacctctctctctttctcaatttctgtctgcgtcgataggatttatgattttgatct  1805100                                                <----------DOF2                                      <------ZmHOX2a(1)                                         <----           <---------ANAC58          <----------ID1                       <--------P            ----- >ZmHOX2a(2)            <-----------RAV1(1)     <---------DAG2        <---------ANAC46          <---- ->ARR11(3)<---------ANAC58    --------->At4g35610               <---------ANAC58               ----- =HOX2a_HOX2a           --------->ALFIN1     <-----------GT1     <---------ANAC58              ------ --ARR11(3)<---------ANAC46    <---------At4g35610             <-----------GT1              <--------   tgtgttgatttttgcttgttttatatgtgttgcagctataggacgaattactttatcttggtgattttcgttctgggtaagttatagttttgcagaattt  1805200                                                      ----------->GT1                                                    <---------MYB52(1)                                                <---------ZAT18                                                --------->ZAT18        --------->At4g35610                     --------->ZAT14        <---------At4g35610                     <---------ZAT14   <----------DOF2                         ------>ZmHOX2a(2)  <---------ANAC58                        <------ZmHOX2a(2)  <---------ANAC58                       --------->ARR14(3)  <---------ANAC46                       <---------ARR14(3)                                     ----- -----YAB1                               <---------ARR11(3)                                     <---- ---->AHL20(1)                           <---------ARR14(2)                                   <------ -----AHL20(2)                           --------->ARR11(3)                                <---------MYB46(3) ---->AHL20(2)                           <---------AGP1                            <---------ANAC58 --->AHL20(2)                            --------->AGP1                            <---------ANAC58 -GLK1(2)              <---------ARR14(2)--------->ARR14(2)                      --------->ARR11(3) <   tattgcttttagctgtatttttgggaatttgggttttgatcaagatcttgtgcagtttgttaatccatgtttgtgttgaaacaggtcttgcgcttgttac  1805300  Previous    Next  AGI:  At5g05980.1    Description:  ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B); tetrahydrofolylpolyglutamate synthase. similar to ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D), tetrahydrofolylpolyglutamate synthase [Arabidopsis thaliana] (TAIR:AT3G55630.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO69132.1); contains InterPro domain Mur ligase, central; (InterPro:IPR013221); contains InterPro domain Mur ligase, C-terminal; (InterPro:IPR004101); contains InterPro domain Folylpolyglutamate synthetase; (InterPro:IPR001645) Range:  from: 1799491    to: 1804493    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g05985.1    Description:  pre-tRNA. tRNA-Val (anticodon: CAC) Range:  from: 1804617    to: 1804690    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g05987.1    Description:  prenylated rab acceptor (PRA1) family protein. similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT3G11397.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72272.1); contains InterPro domain Prenylated rab acceptor PRA1 (InterPro:IPR004895) Range:  from: 1804805    to: 1806851    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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