Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  --------->ANAC55(2)                <---------ANAC55(2)                                        ------>MYB46(1)             <---------MYB52(1)          --------->MYB52(1)               ----------->RAV1(1)     --------->ANAC58                   <---------WRKY38(1)         <-----------HVH21     --------->ANAC58       <----------ID1                       =====================RAV  --------->At4g35610  ---------->DOF2 --------->MYB46(3)        ----------->RAV1(2)       <---------ZAT18 -------->YAB1  <---------ANAC58       <---------MYB52(2)   <-----------GT1------>MYB83    <---------ZAT14 -------->AGL15 <---------ANAC46      --------->At4g35610 ------->TEIL  --------->MYB46(3) --------->ZAT14 ---------AGL15 <---------ANAC58---------->DOF2   ------>ZmHOX2a(1)------>ZmHOX2a(1)       --------->ZAT18   tatcagcacgacttcgtttcgtgatcaaagacgacaaagcagccaacgcttcctcatatgaatcacctcctgtcaccaacaaaaacaaacaagtgaactc  1804100                                                                               <---------ARR14(2)                                                                      ------>NtERF2                                                                     >>>>>>>>>AtERF-4                                                                   <---------At4g35610                                                                   --------->At4g35610                                                                   <---------ZAT2       --------->TOE2(3)                   <---------ANAC55(2)  --------->YAB1   <---------MYB52(2)    --------->ARR14(2)              --------->YAB1 ------------------------>ANAC81       --------->ZAT2------>ZmHOX2a(2)  -             <---------YAB1  --------->ARR11(3)        --------->YAB1>>>>>>>>>AtERF-3<----------DOF2-        <---------ZAT6   <------ZmHOX2a(1) --------->YAB1--------->MYB46(3) --------->DDF1 --------->MYB52(1)   gattcgattactgttatcatcaagtgaggaagagctagagaagaataagaaaatcaataacaaaccttgagctgccatgtcgatctgctttcttaacgaa  1804200                                                         ---------->TaMYB80                                                    <---------LBD16                                                    --------->HSFB2a(2)                                                    <---------HSFB2a(2)                                                 --------->GLK1(2)                                                <---------GLK1(2)                                                <---------ARR14(2)                                                --------->ARR14(2)                              -----                                             --------->LBD16                                ---------          --------->ANAC58              <---------HSFC1(2)                               --------->GLK1(1)          --------->ANAC58              --------->HSFB2a(1)                              <---------GLK1(1) -------->GLK1(2)                       --------->HSFC1(2)                        ---------->DOF2 ------>TEIL                            <---------HSFB2a(1) <---------YAB1  ---------->DOF2 ---------   tgaatctgaaacacgaataagagagaatatcagagatgccgaaactccgagattctcggaatatgagagacagagagcgaaagagaaagggaaacctgaa  1804300                             <---------ANAC46                          <---------AtMYB61                        <------MYB83                        <------MYB46(1)           --------->DEAR3(1)                       --------->ALFIN1          --------->ATERF1(1)                       --------->MYB111(2)      <---------At4g35610                 --------->ALFIN1              <---------PCF2               <------MYB46(1)                 --------->TCP20               <------MYB83  --------->ALFIN1  --------->TCP16(1)              --------->MYB55(2)      <---------ZAT6              --------->MYB111(2)     --------->ICU4                                              ---              --------->MYB46(2) <------MYB83 --------->ATERF1(1)                                 ---              --------->MYB111(1)<------MYB46(1)--------->At4g35610                             -----      <------ZmHOX2a(1)<---------MYB46(3)   --------->ALFIN1                               --------->At4g35610 ----->DOF2   <---------MYB46(3)<---------AtMYB61<------NtERF2            ----------->HVH21<---------At4g35610 >TOE1(3)    <--------P--------->MYB55(2) <---------MYB46(3)    <---------ARR14(2)       <------NtERF2 >TOE2(3)    <---------MYB55(1)<--------P<---------AtMYB61     <------ZmHOX2a(1)  ---------->DOF2 ---   aagagagaggagatggtaggtgaggctggtggtgttggtagtgatggtggagccgaagagtgagaggaatcgagagttgacagagaaaggcagagctcaa  1804400                                                                         <---------DAG2                                                                         <----------DOF2             <---------TOE1(1)                                          <---------ANAC58         <---------MYB46(3)                                  <---------ALFIN1                *TSS        --------->ALFIN1                                 <------------------------ANAC81     -------- ------>ANAC46                                      <---------TOE2(3)   <---------ANAC58   <---------LBD16 ------>ANAC58                     <---------ATHB12 <---------YAB1     <------------------------ANAC81 ---->MYB52(1)             --------->ARR14(2)    <---------MYB52(2)<----------DOF2    <----------DOF2 ------>ANAC58             <---------ARR14(2)  --------->ZAT6--------->REM1(1)   <-----------GT1   acggcacgatgtggttcgaggtactatcgaaactgcaaacattctcttgtcactaacattgctacacttcttttgctttttgtttactctttttcggcaa  1804500                           ----------->GT1                           <----------ID1               ------>NtERF2             <------NtERF2------------------------>ANAC81             --------->RAP2.3(1)            <---------ORA47(2)                                                      <---------AHL20(2)            <---------ATERF1(1)                                                    --------->AHL20(2)            <---------DEAR4(2)                                                     <---------AHL20(2)            <---------RAP2.3(1)                             ------------>CBF   ------>ZmHOX2a(1)           <---------RRTF1(3)                          --------->ZAT18        --------->TOE2(3)   <--           <---------RAP2.3(2)                       <---------ZAT18     <---------At4g35610     <---       ---------->DOF2---------->DOF2          --------->MYB52(1)        --------->At4g35610 -------- ---->CBF  <---------DEAR3(1)    ------------------------>ANAC81        <---------TOE1(3)    --------   tttgttgacgaaagcggcgcatcacaaagacgaaaaaaaaaaaaaaaaaaaacagagcgcatcacaattttgttaagcttccttattaaatacaaactta  1804600                               <-------GAMYB                              <------MYB46(1)                        --------->ZAT14                        xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        xxxxxxxxxxxxxxxxx>smallRNA(fl3)                       xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       <---------REM1(1)                       <---------ANAC46                     xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <------MYB83xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     <---------ANAC46                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    <---------DEAR3(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    <---------AtMYB61 --------->ANAC58                    --------->ALFIN1  --------->ANAC46                  xxxxxxxxxxxxxxx>smallRNA(se3)                 xxxxxxxxxxxxxxx>smallRNA(se3)                 xxxxxxxxxxxxxxxx>smallRNA(se3)                 xxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 xxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <---------LBD16                 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   <---------LBD16                 xxxxxxxxxxxxxxxxxx>smallRNA(se3)                         xxxxxxxxxxxxxxxx>smallRNA(i)                 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 xxxxxxxxxxxxxxxx>smallRNA(s)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxx>smallRNA(i)                 xxxxxxxxxxxxxxxxx>smallRNA(se3)                        xxxxxxxxxxxxxxxx>smallRNA(i)                 xxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxxxxxxxxxxxxx>smallRNA(s)                 xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxx>smallRNA(s)                 xxxxxxxxxxxxxxxxxx>smallRNA(le3)                     xxxxxxxxxxxxxxxx>smallRNA(s)                 xxxxxxxxxxxxxxxx>smallRNA(le3)                       xxxxxxxxxxxxxxxx>smallRNA(i)                 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxx>smallRNA(s)                 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------TOE1(2)                 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              --------->LBD16                 xxxxxxxxxxxxxxx>smallRNA(le3)                 <---------LBD16                 xxxxxxxxxxxxxxxx>smallRNA(fl3)                <------NtERF2                 xxxxxxxxxxxxxxxxx>smallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 *TSSxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->PCF5xxxxxxxxxxxxxxxx>smallRNA(s)                 xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <-----------HVH21--------->LBD16        <---------AHL20(2)    <---------DEAR3(2)   --------->ANAC46  xxxxxxxxxxxxxxxx>smallRNA(i)        --------->YAB1xxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxx>smallRNA(si3)    --------->AHL20(2)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxx>smallRNA(si3)    <---------AHL20(2)xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxx>smallRNA(le3)   --------->AHL20(2)<------MYB46(1)  --------->ANAC58xxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------AHL20(2) -------WOX13(1) xxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxx>smallRNA(s)------>NtERF2   <------- ---------CBF   xxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------ALFIN1 xxxxxxxxxxxxxxxx>smallRNA(i)    <-- ->YAB1 --------->AHL20(2)    <------MYB83  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       --------->AHL20(2) ->TOE2(3)---------->DOF2  xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(s)   ===   attgaattaataaaaagtctgggtggtgtagtcggttatcacgctagtctcacacactagaggtccccggttcgaacccgggctcagacatttttttact  1804700                                                 <---------ZAT14                                                 <---------ZAT18                                                 --------->ZAT18                                                 --------->ZAT14                             <---------PCF2  ------->MYC2                          --------->ALFIN1   <-------MYC4                         <-------MYC4        <-------MYC3                         ------->MYC4        ------->MYC3                         <-------PIF4        ------->MYC4                         ------->PIF4        <-------MYC2                         <-------MYC3       --------->O2                                            -                         ------->PIF5       <---------O2                                            -                         <-------MYC2       --------->TGA1a                                    ------                         ------->MYC3       ========================================bZIP_DOF --------                         <-------PIF5       --------->ANAC55(2)                              <-------                         ------->MYC2       <---------ANAC55(2)                    --------->LBD16  -                        <---------O2  --------->ANAC58                           <---------LBD16    <                        --------->TGA1a    ------------>OsbHLH66                --------->MYB52(1)---                        <---------TGA1a   <---------ALFIN1                     --------->MYB52(1)<--- ----GT1                --------->O2  --------->ANAC58                     --------->ANAC58 ------>MYB46(1) --------DOF2          ------------>OsbHLH66<---------TGA1a                --------->ANAC58 ------>MYB83 =================================bZIP_DOF<------------OsbHLH66          ---------->DOF2  <---------MYB59   cttttttttgggattttttagtttgcacgtggggactcactcgcacacgtgtgtactaatctccatttcttaggcaaaagcaaaccggagaaccaaacaa  1804800     *TSS     ----------->GT1     <---------ANAC46   <---------ARR14(2)   ------->TEIL                                                                          <---------WRKY12 -------->ANAC58                                                             --------->CCA1(2) -------->ANAC58                                                            --------->ARR11(1)     <- --->WOX13(1)                                                               <---------ARR11(3)     -- ---->CBF                                                                   <---------ARR14(2)     -- --ATHB12                                        ------------------------>ANAC81 --------->ATHB12  <- -------->ANAC55(2)                       <----------DOF2                   --------->ARR14(2)     -- ---------ANAC55(2)                --------->ARR14(2)                       --------->ARR11(3)   <--- ------>YAB1                       <---------ARR14(2)                     ----------->ARR10     <---- ------ATHB12--------->YAB1    --------->HSFB2a(2) <------ZmHOX2a(1)<---------ANAC46     <---------WRKY38(1)   tcacgaatcgtgtaatcaaactcatcggagtctctcgaattcgtctttgaagaggaagagaagagaagaggcgagggagatatggattgggacaacgtag  1804900                                                      --------->MYB52(2)                                                      <---------MYB46(3)                                                     <---------TOE1(2)                                                    <---------MYB52(1)                                                 ------>ZmHOX2a(1)                                              ------>NtERF2                                             --------->DEAR3(1)                                            --------->ATERF1(1)                                          --------->ANAC58                                          --------->ANAC58            <---------WOX13(1)            --------->DEAR3(1)          --------->ATHB12                --------->ANAC46                       <---------ANAC58         <---------YAB1                  --------->ATERF1(1)                     <---------ANAC58     <------ZmHOX2a(1)                  <---------ATERF1(1)                 --------->ARR14(2)   <---------TOE2(3)                   --------->ETT(2)                     --------->ARR11(1) --------ZAT2                          <---------DEAR3(1)                   <---------GLK1(2)     --- ------->ZAT2                          <---------ETT(2)      <---------ANAC58 <-------TEIL        <-- --------->RAV1(2)                     <---------WRKY38(1)   <---------ANAC58--------->CCA1(2)   <--- --------At4g35610                     <---------WRKY12      <---------ANAC46--------->ARR14(1)  <--- ------->At4g35610           ----------------------->TaNAC69(2)  <---------ARR11(3)              ---- --------RAV1(2)        --------->HSFB2a(2)------>NtERF2<---------MYB52(1)  <---------ARR14(2)   <--- -----At4g35610         <---------HSFB2a(2)<---------ATERF1(1)   --------->ARR11(3)           <------   cagctgaggatgtgattgaggcgcttagagaagttgaatggtcgacgcctcctcgttcgtttggcgagttcttctctagattcgcgttccctcgctcttt  1805000  Previous    Next  AGI:  At5g05980.1    Description:  ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B); tetrahydrofolylpolyglutamate synthase. similar to ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D), tetrahydrofolylpolyglutamate synthase [Arabidopsis thaliana] (TAIR:AT3G55630.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO69132.1); contains InterPro domain Mur ligase, central; (InterPro:IPR013221); contains InterPro domain Mur ligase, C-terminal; (InterPro:IPR004101); contains InterPro domain Folylpolyglutamate synthetase; (InterPro:IPR001645) Range:  from: 1799491    to: 1804493    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g05985.1    Description:  pre-tRNA. tRNA-Val (anticodon: CAC) Range:  from: 1804617    to: 1804690    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g05987.1    Description:  prenylated rab acceptor (PRA1) family protein. similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT3G11397.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72272.1); contains InterPro domain Prenylated rab acceptor PRA1 (InterPro:IPR004895) Range:  from: 1804805    to: 1806851    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version