Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   --------->TOE2(3)                                                 --                                <---------ICU4                                                     <-                                --------->YAB1                                                    ---             --------->GLK1(1) <---------ATHB12                   <-------TEIL          <---------ZAT14             <---------GLK1(1) --------->ICU4                --------->YAB1             --------->ZAT14 -------->DAG2         <---------ICU4                       <---------YAB1 <---------YAB1 -----------   aaaaattgaaatcggaactctctaatatttgcaaacattatatcaatactggttctcacattatcatgttcatccttgtgataaacccagtacagtgaca  1697800  --------->YAB1                                                          --------->WRKY12  <---------ICU4                                                        --------->LBD16 ------->YAB1                                               <------ZmHOX2a(2) --------ICU4  --------->ANAC58                      <-----------GT1-------->P          <------ZmHOX2a(2) ------>ICU4   --------->ANAC58             <-----------GT1<---------ARR11(3)          <---------ARR11(3) >GT1          --------->ANAC46         --------->AHL20(2) --------->AGP1 --------->WRKY38(1)   ataatcatcttgtgaacaaggaacacaatttgtttatcccaatttaaaaccagttttaccagatcaatacaacccgtagacccatacacgatcatcccaa  1697900                                                                                            ------->TEIL                                                                                   --------->LBD16                                                      <---------AHL20(2)          --------->HSFB2a(2)      ----------->GT1                                 --------->AHL20(2)------>ZmHOX2a(1)<---------YAB1    ---------->DOF2                             ------------------------>ANAC81   <---------HSFB2a(2) <---------YAB1       ------>ZmHOX2a(1)         ----------->GT1    <---------GLK1(2)     --------->ICU4   gttatgaaaagataaatgctaatcctacattgatgcgctgtttcaacgagatgtaaaaaaatacaaacagattcctctaaaattccagataatgaatata  1698000                                                                              <------NtERF2                                          <---------ANAC46                    <---------LBD16                                          <------MYB46(1)                --------->ALFIN1                                          <------MYB83          --------->DEAR3(1)        ----------->GT1                  <---------MYB46(3)    --------->DEAR3(2)<------NtERF2        --------->At4g35610              <---------AtMYB61    ------->TEIL  <---------DEAR3(1)       <---------ARR11(3)                --------->MYB55(2) <---------ABI4(2) --------->ATERF1(1) <-- --------->ANAC58  --------->ANAC46    <---------MYB52(1)  --------->ANAC58 --------->ALFIN1    ----- --------->ANAC58<-----------GT1  ------->TEIL             --------->ANAC58<------ZmHOX2a(1)   ------   gacaaacaagagctaaaatttacccaagagtaaatgaatccatttggtggaagagatagaaacgcaccgatgggagaggaggcggaagacgaatacaacg  1698100                                                              <-----------GT1                                                       --------->AHL20(1)                                   <---------TOE1(3)   <---------AHL20(1)        --------->LBD16 <------NtERF2             <---------AHL20(2)      <---------At4g35610    --------->ATHB12     --------->AHL20(2)      --------->At4g35610   <---------YAB1    <---------AHL20(2) --------->ALFIN1      ------>NtERF2   <-------TEIL<---------AHL20(2) -------DEAR3(1)      <---------DEAR3(1)      --------->AHL20(2) -->GAMYB             --------->DEAR3(1)     --------->AHL20(2)     <---------MYB52(1)              - --->MYB46(3)      --------->ANAC46<---------TOE2(3)  *TSS  <---------AHL20(2)      ------------>CBF<   acggtggaagcggagaagaacacggcgacgatgatttagggttcagatttaattttatatattaaaaccagttagtgcttcttcatttcaatttgtttcg  1698200                                                                                                    <                                                                                                 ----                                                                                                 ----              <------NtERF2                                     <----------DOF2                 <----          <----------ID1                                      --------->At4g35610              <-----     <---------AHL20(2)                                   --------->ARR14(2)                  ------>NtERF2  ----------->GT1                --------->TOE2(3)        ------->TEIL *TSS                  -------- -------->ARR11(3)              --------->ANAC46          <---------ARR14(2)   <-----------GT1------- ---------ARR11(3) ---------->DOF2------------>CBF       <---------CCA1(2) <----------DOF2  <--------   aagatagttaatgggccgaataaaagcccattaaacgtcaatacgaagtcgtttcaactgtatctgcttcatcgcttcttttctcccttctcttcccgcc  1698300 <---------ARR14(2) --------->ARR14(2) --------->GLK1(2) ------->TEIL                                                                                       - ---------CCA1(2)                                                                                  <- ----->At5g28300                                                                         ============ ----->LBD16                                         <---------ZAT14         <---------DOF5.7(2)   <- -----ANAC46              ------>ZmHOX2a(1)   --------->ANAC46             --------->DOF5.7(2)     -- -NtERF2             <---------GLK1(1)     <-------TEIL                   <----------DOF2============ ->ANAC46            <---------At4g35610  --------->CCA1(2)               --------->TOE2(3)   ------- -->LBD16           ------->TEIL         --------->ARR14(2)               --------->TOE1(3)   ------- -LBD16    --------------------->WRI1    <---------ARR14(2)            <-----------GT1   <------ZmHOX2a(1)   gtgaatctggtgtctgtgtctgcatctccttccgacgaaaacagatacactcgagtgaagaaagtatgaaatttaactttaacgagacagaggatgcacc  1698400                                         <---------ARR14(2)                                         --------->ARR14(2)                                        <---------PCF2                                       <------MYB46(1)                                       <---------DEAR3(2)                        ---------->DOF2<------MYB83                  ------>NtERF2       <---------MYB46(3)               ------>NtERF2       <---------ANAC46               <---------ATERF1(1) <---------ANAC58              ----------->HVH21    <------MYB83           ------>ZmHOX2a(2)      <---------AtMYB61          <---------GLK1(1)       --------->MYB52(2)          --------->GLK1(1)       --------->MYB111(2)          <------ZmHOX2a(2)       --------->MYB59                                                  --         <---------ARR14(2)       --------->MYB111(1)                                              <-         --------->ARR14(2)       --------->MYB55(2)                                               <-         --------->ARR11(3)     <---------MYB52(1)                                                 --    --------->ANAC46  ---------->DOF2--------->ALFIN1                                              <- <-------TEIL --------->DEAR3(1)<--------P                                                         <- -------->CCA1(2)--------->ANAC58 --------->MYB46(2)        --------->LBD16                        -- --------ARR14(2)--------->ANAC58<---------MYB55(1)       <---------LBD16                         <-- =================HOX2a_HOX2a  <-------GAMYB ------>ZmHOX2a(1)                                   ---- --------GLK1(2)--------->ATERF1(1)<---------ANAC58     ------>NtERF2                            ---- ------->ARR14(2)--------->DEAR3(1)<------MYB46(1)     <---------ALFIN1                         ----- ================HOX2a_HOX2a   <-----------HVH21       --------->DEAR3(1)                      ------ >TEIL   <---------ARR11(3)------------>AtMYB77       --------->MYB46(3)                     ------->TEIL ---->RAV1(1) --------->ANAC46<---------DEAR3(2)  --------->LBD16                 ------>ZmHOX2a(1)<-   agattcacgacgatctccgacgcccaaagagccggttaggtgggttcctctccagagccacccggttttcgcttctcttccttcctcccaagatgaaccc  1698500        --------->ZAT2        <---------ZAT2        <---------At4g35610        --------->At4g35610      <-----------RAV1(2)  <-----------HVH21  --------->REM1(2) --------->ALFIN1 ----------->HVH21 ------->O2 --------TGA1a --------ANAC58 ------->DEAR3(1) --------ANAC58 --------O2                                          <---------ARR14(2)     --------->ARR11(3) ------->TGA1a                                       --------->ARR14(2)     <---------ARR11(3) ----NtERF2                    <---------ANAC58   <---------ANAC46         --------->GLK1(1) ----->LBD16                   <---------ANAC58  --------->LBD16           <---------GLK1(1)      <-- -->NtERF2                     <---------ANAC46 <---------ANAC46    --------->HSFB2a(2)     <-------- ---->ANAC46     --------->LBD16   ----------->HVH21 <---------ZAT14<---------HSFB2a(2)  <---------GLK1(2) --->MYB46(3)    --------->HSFB2a(2)           <---------LBD16  <---------ARR14(2)------>ZmHOX2a(1) --------ANAC46  <---------HSFB2a(2)  <---------ANAC46          --------->ARR14(2)<-----------HVH21   gccgtgtcgcagctgtttccgagaaatttcatggcttgggacggagactcgcgcgtatactactgggattcgagacgatatctccttcaccgattatctc  1698600                                      <-----------HVH21                                     --------->DEAR3(1)                                    <------NtERF2                                   --------->ZAT14                                   --------->At4g35610                                   --------->LBD16                                   <---------At4g35610                    ------>MYB83  --------->DEAR3(1)                    ------>MYB46(1)------>NtERF2            --------->TOE1(3)    --------->RAP2.3(1)           ----------->RAV1(2) --------->ANAC46     <---------ANAC58          <---------DEAR3(1)     <---------ANAC46         ------>ZmHOX2a(1)     <---------ANAC58     <-----------HVH21             <-----------GT1                         <---- -------ZAT18    --------->MYB46(3)<------NtERF2  <---------ARR11(3)                           <----- -ARR11(3)------->TEIL ------>ZmHOX2a(1)   <-----------HVH21                         <----------DOF2<   tgcgcttgggtgaacctgaaccatcctccgtcctcgccgcagtcccgtccaaggtcatttactctctctctctctctctctctctctctttctgttttca  1698700  Previous    Next  AGI:  At5g05670.1    Description:  signal recognition particle binding. similar to signal recognition particle binding [Arabidopsis thaliana] (TAIR:AT2G18770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66106.1); similar to Os08g0524000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062284.1); contains domain SSF52540 (SSF52540); contains domain G3DSA:3.40.50.300 (G3DSA:3.40.50.300); contains domain PTHR19326 (PTHR19326) Range:  from: 1695731    to: 1698154    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g05680.1    Description:  nuclear pore complex protein-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO41349.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046) Range:  from: 1698271    to: 1702646    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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