Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     ------->PIF5                                                                                   ------->MYC3                                                                                   <-------MYC3                                                                                   <-------PIF4                                                                                   ------->PIF4                                                                                   <-------MYC2                                                                                   <-------PIF5                                                                                   ------->MYC2                                                                                  --------->ANAC58                                                                                  --------->ANAC46                                                                                  --------->ANAC58                                                                               <---------ZAT14                                                                               <---------ZAT18    ---                                                                               --------->ZAT18   <---                                                                         <-----------HVH21       ----                                                                        <---------ANAC58        <----                                                         --------->ARR14(2)    --------->ZAT14  <----                                                   <-----------RAV1(1)  <---------ANAC46        <----                                                --------->ARR14(2)      <---------ANAC58 <---------ANAC46                                                <---------ARR14(2)      --------->ANAC55(2)     -----                                              --------->LBD16           <---------ANAC55(2)     <----                                            <---------LBD16             <---------O2     <---------ANAC58    <---------YAB1                         --------->MYB52(1)           --------->O2  <---------DEAR3(1) ---------GLK1(1)                       <---------ZAT2   <---------ARR14(2) --------->RAP2.6(3) ----- ->HSFB2a(1)   <------ZmHOX2a(2)        --------->At4g35610             --------->TGA1a  <---------ANAC58 ->HSFC1(2)   <---------ARR14(2)        --------->ZAT2   <---------GLK1(2)----------->HVH21    <----- --HSFC1(2)   --------->ARR11(3)        <---------At4g35610         <-----------HVH21--------->LBD16 --HSFB2a(1)  --------->ARR14(2)  --------->HSFB2a(2) <---------ANAC46  <---------TGA1a <------NtERF2 ------>WRI1  <---------ARR11(3)  <---------HSFB2a(2) --------->ETT(1) <------NtERF2--------->ANAC46   cgatttctgatacgacgatctacatttcggacagttccagacagcttccggttctgtcggattcgaagaaggtcgcgtgactgcacgcgcggcttgtaga  1695100         <---------ANAC58         <---------bZIP60(2)         <---------ANAC58                                                                    <-------      ----------->HVH21                                                             --------->MYB52(2) --->ZmHOX2a(2)                                                                   <---------MYB52(1) ---ZmHOX2a(2)                                                                  <---------MYB46(3) ----->CCA1(2)                                                    <------ZmHOX2a(1)<-------TEIL -------ARR10                                                     ====================HOX2a_HOX2a -----ARR11(3)      <---------WOX13(1)       <------NtERF2    <---------ZAT14   <---------DEAR3(2) -----ARR14(2)    --------->ATHB12         <---------DEAR3(1) --------->ZAT14  ------>ZmHOX2a(2) ---->AGP1       <---------YAB1       ---------->DOF2         --------->ZAT18<---------ARR14(2) -----AGP1       <---------ATHB12 ----------->GT1            --------->ALFIN1--------->ARR14(2)   <-- ---->ARR11(3)   --------->ICU4---------->DOF2           <------ZmHOX2a(1)  <------ZmHOX2a(1)<------- ----CCA1(2)  ------------>ATHB5 --------->DAG2          =============================HOX2a_HOX2a ---   tctaagcactgacgagcccatgattgaatgcagaaaaggtgaaagacggcgaagcatgaggaagtgcaggaccatgtaggatcggttcgtttaatgcgtt  1695200                     <---------ALFIN1                    <---------ZAT2                    <---------ABI4(2)                    <---------At4g35610             <---------TGA1a                           ==========================HOX2a_HOX2a             --------->ANAC58                          ------>ZmHOX2a(2)        --------->ANAC58                             <---------ARR14(2)        --------->DAG2 <---------LBD16               <---------ARR11(3)        --------->ANAC58 --------->LBD16             --------->ARR11(3)       ================bZIP_DOF                      <-----------ARR10         <----------ID1       ---------->DOF2--------->MYB52(1)             --------->ARR14(2)   <------ZmHOX2a(1) --ANAC58    --------->TGA1a                         <---------AGP1--------->ATHB12 -------HSFB2a(2)   --------->At4g35610             <---------CCA1(2)   <---------TOE2(3) --------->ALFIN1 --ANAC58    --------->ANAC58                  --------->ATHB12  <------ZmHOX2a(2)       --------->ATHB12 ------>HSFB2a(2)   <---------ZAT14           --------->ICU4     ================HOX2a_HOX2a    -----   cgagacagataaggcacgagacagcaccggaagaagacgaggcgagaaaagattggatcttagcgagatcgattgaggaaggggacgaagatgagtggca  1695300                                                                              ------->TEIL                                                                              --------->GLK1(2)                                                                              --------->ARR14(2)                                                                              <---------ARR14(2)                                            <---------At4g35610    <---------LBD16                                            --------->At4g35610    ------>ZmHOX2a(2)                                           --------->ALFIN1       --------->CCA1(2)                                     ----------->TGA1             <------ZmHOX2a(2)                                     ----------->HVH21           --------->AGP1           <XXXXXXXXXXXXXXXXXXXMIR866-3P<---------DEAR3(1)       <---------GLK1(2)       <---------At4g35610      --------->ATHB12                 --------->ARR14(2)       --------->At4g35610     <------ZmHOX2a(2)                 <---------ARR14(2)            <-----       <---------HSFC1(2)      <---------YAB1  <---------At4g35610--------->ARR14(1)           <-----       --------->HSFC1(2)     <---------ARR11(3)   <---------GLK1(2) --------->LBD16------->TEIL<----    <--------P                --------->ARR11(3) <---------YAB1  --------->ARR11(3) <---------ARR14(2) <---------TOE2(3)         <---------WOX13(1) --------->ICU4    --------->At4g35610 --------->ARR14(2) ---->WOX13(1)          <---------YAB1  <---------bZIP60(2)    ----------->ARR10    --------->GLK1(2)   atcgaggtaagcttcgaagatggagtttgatagatcattgtgacggtgctgatgattctctgaatcagatccggagtctgaatctgaatctgaaatgggt  1695400                                                         ------>NtERF2                                                        --------->ANAC46                                                    <---------ARR14(2)                                                    --------->ARR14(2)                                                   <-------GAMYB                                                   --------->ATERF1(1)                                                  <---------DEAR3(2)                                                  <---------MYB46(3)                                                 <---------ANAC58                                                 <---------RAP2.6(2)                                                 <---------ANAC58                                                 <---------ANAC46                                                <------NtERF2                                               ------------>AtMYB77                                              <---------DEAR3(1)                                              --------->ALFIN1                                             --------->ATERF1(1)                                            --------->ABI4(2)                                            --------->MYB55(2)                                            <---------MYB46(3)                     <---------MYB46(3)    --------->ALFIN1                    <---------AtMYB61      <---------AtMYB61                    --------->ALFIN1 --------->GLK1(1)  ------>NtERF2                    <---------ANAC46 <---------GLK1(1)  --------->LBD16                 --------->ALFIN1   --------->ARR14(2) <---------RAP2.6(2)                         --     ----------->HVH21              <---------ARR14(2)<---------LBD16                           <---- ----ANAC58      <---------AtMYB61--------->LBD16<---------DEAR3(1)                <---------At4g35610 ----ANAC58   <---------DEAR3(1)<---------LBD16<---------ERF1                <<<<<<<<<TBF1     <----- ----P  <---------ANAC46  --------->GLK1(1)<---------DEAR3(1)       *TSS  <<<<<<<<<TBF1 ------>ZmHOX2a(1)   tgctcttgtgacggaggctgtggtggtgatttccaccggaactcggtggtggcggttccggccatattagtcattcttcttcttcatctccttcttaagg  1695500                                                     --------->O2                                                     <---------O2                                                     --------->TGA1a                                           <-------MYC2                                           ------->MYC2                                           <-------MYC3                                          =====================bZIP_bZIP                                          --------->O2                                          --------->ANAC46                                          <---------O2                                          --------->TGA1a                                          <---------TGA1a                  ----------->GT1         --------->bZIP60(2)                --------->MYB52(1)           >>>>>>>>>CBP60g                --------->ANAC58                   <---------At5g28300 <---     <---------HSFB2a(2)                  --------->ANAC58               ------>MYB46(1)        -----     --------->HSFB2a(2)--------->YAB1    --------->ANAC55(2)            ------>MYB83           <---- -------->DOF2  <---------ANAC46          <---------ANAC55(2)      --------->ICU4   <---------AHL20(2) --ZmHOX2a(1) <---------LBD16    >>>>>>>>>TBF1       <---------TGA1a   <---------MYB59         <----- -----ID1  >>>>>>>>>SARD1     >>>>>>>>>TBF1------->MYC3     <------------CBF<-----------GT1  <-------   acaaagtccagaaatttgggggggaataagaagaagaagaagacacgtgatgctctcgtgagcattgtaatgaccaaattaccggtttaatttggattta  1695600                                                                                        --------->KAN4(2)                                                                                        <-----------GT1                                                                                      <---------YAB1                                                     <---------HSFC1(1)    <---------ANAC55(2) ------LBD16                                         <---------HSFB2a(2)   --------->ANAC55(2)<------ ---->MYB52(1)                    <------ZmHOX2a(1)  --------->HSFB2a(2)<------ZmHOX2a(2)   ------>ZmHOX2a(1) -----At5g28300             --------->ANAC46         --------->HSFC1(1) ===========================HOX2a_HOX2a ------GT1            <---------ANAC58         <---------ARR11(3)--------->ANAC58   --------->YAB1  < --GLK1(1)            <---------ANAC58      <----------DOF2      --------->ANAC58  <---------YAB1----   ccggcttagttaagacagtttctagcttatccccaaggacttctcgcgttatcttctcgaagttgataagcacgatcacttatctatgattatcctcttt  1695700                                          <---------ICU4                                   ------>ZmHOX2a(1)                                  --------->TOE2(3) ----DOF2                         --------->TOE1(3)                    ----------->GT1 ----------DOF2            <---------TOE2(3)                     <---------MYB59                 <--- ------>ID1               <-----------GT1<---------ATHB12   <---------GLK1(2)    <---------At4g35610   tccttttttgcaagagaattaagtcatttaacatttccttaaaatcattccgatttaaaacagattatctaactcgaaaatacagctactcagttttgaa  1695800                                       --------->ZAT14                                 <---------ARR11(3)                                 --------->ARR14(2)                                 <---------ARR14(2)                  ------>ZmHOX2a(2)------>ZmHOX2a(2)                  =====================HOX2a_HOX2a                 ======================HOX2a_HOX2a                 <------ZmHOX2a(2)<------ZmHOX2a(2)            ---------->DOF2                --------->ARR11(3)<---------GLK1(1)       --------->DEAR3(1)       <--------P                <---------ARR11(3)--------->GLK1(1)     <---------At5g28300     <---------AtMYB61            ---------->DOF2      --------->ARR11(3)  <-----------HVH21 --------->ANAC58      <---------ATHB12      ---------->DOF2     <---------ATHB12       --------->ANAC58 <-------TEIL ------ALFIN1   <---------AGP1  <------ZmHOX2a(1) ---------->DOF2  --------->YAB1  <-----------------   caccctaaatcatccaaagatctcatatacaaaaggatctctaaactcaaatcaaagtcacagcccaaagcataagaaacttgtggtagattcaatctat  1695900                                                                                         --------->At5g28300                                                                                     ----------->RAV1(1)                                                                          --------->At4g35610                                                                  <--------P        ----------->HVH21                    <----------DOF2                              <---------MYB52(1)--------->At4g35610                   <---------ANAC58                             --------->LBD16    <---------At4g35610                   <---------ANAC58                           <---------LBD16    ---------->CDC5                   <---------ANAC46                    <---------MYB46(3) <---------At4g35610   <----           --------->At4g35610 --------->HSFB2a(2)     <------MYB46(1)  =========================RAV ----WRI1  <---------At4g35610 <---------HSFB2a(2)     <------MYB83     <-----------RAV1(2)   <------   gaaggcatgttggagctcatggcttgatgtattctcgaatgaagtcttcaatctggatggtttctccggtaagtccagatgcctcagcgacagtgacttt  1696000  Previous    Next  AGI:  At5g05660.1    Description:  transcription factor. similar to ATNFXL1, transcription factor [Arabidopsis thaliana] (TAIR:AT1G10170.1); similar to Os01g0158900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042080.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ63918.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41368.1); contains InterPro domain Zinc finger, NF-X1-type; (InterPro:IPR000967); contains InterPro domain Protein kinase-like (InterPro:IPR011009) Range:  from: 1690852    to: 1695468    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g05670.1    Description:  signal recognition particle binding. similar to signal recognition particle binding [Arabidopsis thaliana] (TAIR:AT2G18770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66106.1); similar to Os08g0524000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062284.1); contains domain SSF52540 (SSF52540); contains domain G3DSA:3.40.50.300 (G3DSA:3.40.50.300); contains domain PTHR19326 (PTHR19326) Range:  from: 1695731    to: 1698154    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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