Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <---------YAB1                                                                   <---------------AGL15                                                                   ==================================                                                                   --------------->AGL15                                                                  --------->YAB1                                                                <-----------GT1      --------->ANAC46                                                        <----------DOF2            <---------ALFIN1                                  <----------DOF2   --------->GLK1(1)      --------->At5g28300 ------>DOF2                 <----------DOF2        <---------GLK1(1)     ----------->GT1   aaagcttattctatgccttactagatgaagacttttcttttcaatggattttggatttctttgatttttcattatacagtaacttacaccgcatgggaga  1684200                  <------ZmHOX2a(1)                 <----------ID1               --------->DAG2              ---------->DOF2--------------------->WRI1       --------->YAB1       <---------ANAC58      <---------YAB1      <---------AHL20(2)                                    <---------WOX13(1)   <---------------AGL15  <-----------GT1                 ------>ZmHOX2a(1)   --------->ATHB12 ==================MADS_MADS<---------ANAC58          --------->ARR14(2)     <-------TEIL           -   catttctgatcatagaaaaaggacaaaattacttgctatatttcgccatcttacacaatcctcttagagttttagtcgattcattgacaacaagggatag  1684300                                                              --------->ANAC58              ---------->DOF2                                 --------->ANAC58                     <-         ---------->DOF2                                  --------->ANAC58                        <--       --------->ANAC58                                   --------->ANAC46                        <--       --------->ANAC58                              <---------ZAT14                              ---       --------->ANAC46                              --------->ZAT14                          <------    <-------TEIL ----------->GT1           >>>>>>>>>TBF1  --------->ANAC58                    ------- -------------->AtSPL8       ----------->RAV1(1)     <---------ZAT18<---------YAB1    ----------->GT1   tctacgtacaagaaagaaaaggaaacaacaacaacaaaacaagaagaagaaacagtgaacacacaagcttatgttagtatgttacagatagtatatataa  1684400                                                                                                 ----                                                                             <---------ANAC58    ----                                                                             <---------ANAC55(1) <---                                                                             --------->ANAC55(2) ----    <---------ANAC46                   --------->ICU4                        <---------ANAC55(2)<----   ---------->ID1                     <---------TOE2(3)                      <---------ANAC58   ----- --------AHL20(2)           --------->YAB1                                 <-----------GT1      <---- -------AHL20(2)           --------->AHL20(2)                           <---------ICU4          ----- -------AHL20(1)           <---------AHL20(2)                  <---------ANAC55(2)       <----------DOF2 ------>AHL20(2)          --------->AHL20(2)                   --------->ANAC55(2)  <-----------GT1 ---AHL20(2)           ------>ZmHOX2a(1)                  --------->WOX13(1) <---------ANAC46 <------ -->AHL20(2)    <---------GLK1(2)--------->ZAT6     <---------YAB1  --------->ZAT6 <-----------GT1   tttttttcgtctatccaaaattctcctaattaataacactaatgtttatgacttatgagtctatcacttaacactaattacgtttttaaccctttgtaac  1684500        ----------->RAV1(2)        <---------At4g35610  <---------WOX13(1) <------------CBF ----->TOE2(3) ----------->AGL15 ------------AGL15 ----->TOE1(3) -------------AGL3                                <-----------HVH21 ---->ZAT6   <----------DOF2   --------->ZAT14    <-----------TGA1              ------>ZmHOX2a(1) -------------AGL1  <---------ANAC46       --------->TOE1(2)       *TSS <----------DOF2 ------------>AGL2  ----------->GT1        --------->TOE2(3)     <---------MYB52(1)  ---------->DOF2 -----GT1 ------>ZmHOX2a(1)<-----------GT1 --------->TOE2(2)    --------------------->WRI1   --------   cctaattggctcctgcttcatgttgtatataactgctctcagaaacctaagtcgtcactccctctcccttggttctttcttcctcttgaaagctagaaag  1684600                                    <----------DOF2                    --------->bZIP60(1)                         --------->ARR11(3)                          --------->At4g35610                         <---------ARR11(3)                          <---------At4g35610                         <-----------ARR10                        <---------At4g35610            ----             <---------ARR11(3)   --------->ZAT2               <---------ANAC58                  ----             --------->ARR11(3)   --------->At4g35610  <---------CCA1(2)           ----------->RAV1(1) -->DOF2     <-----------ARR10 <---------At4g35610------->TEIL <---------ANAC58  --------->At4g35610   aagaaaatggaagaagctcttagcgaagctcttagcagctttgacttcgatgaacttgtagcttcgcttgctgatgccatcgcagcaacatcgactccca  1684700                                                                                     --------->KAN4(2)                                                                                    <---------HSFB2a(1)                                                                                    --------->HSFB2a(1)                                                                              <---------ZAT2               <-----------GT1                                                --------->At4g35610    <---------ANAC46                                             ---------->DOF2  <------ZmHOX2a(1)   <---------AtMYB61                                      --------->TOE2(3)   <---------At4g35610 <----------DOF2         <----------DOF2                  --------->TOE1(3)   --------->ZAT2 ----->ANAC58  --------->ZAT6       XXXXXXXXXXXXXXXXXXXX>MIR395B/C/F<---------At4g35610 ----->ANAC58<-----------GT1        XXXXXXXXXXXXXXXXXXXX>MIR395A/D/E--------->At4g35610        <-----   agcctttggtggaattttcactacatgctttgatggctgaattgtttaagagaactaaaaccttacccaaagctgaagtcagcaggacattcttcagagc  1684800                                                                             ---------->DOF2                                                                          <---------YAB1                                                                        --------->YAB1                                                                       --------->ICU4            <---------At4g35610        --------->At4g35610             <---------ATHB12            <---------ZAT2          <------ZmHOX2a(2)                --------->WOX13(1)         <---------ANAC58          --------->ARR11(3)             --------->ANAC58         <---------ANAC46      ---------->DOF2                   --------->DAG2         <---------ANAC58     =============HOX2a_HOX2a          ---------->DOF2     <---------MYB52(1)       <------ZmHOX2a(1) --------->ARR11(3)--------->ANAC58   --------->At4g35610 ----At4g35610     ----------->GT1 <---------ARR11(3)      <---------ANAC46--------->YAB1   tgtttccattggcttgctgagaggtaacattaggaaagatcaactggagagaacttgtgatgctggtaaagcaattatcaaaagagttgctgcaattcta  1684900                              <---------ANAC58                                                    ---                              <---------ANAC58                                                    <--                          ---------->DOF2                                                         <--                     <---------WRKY45                               --------->YAB1            -------                     <---------WRKY12                               --------->ATHB12         --------                     <---------WRKY38(1)                           <---------YAB1   <---------ALFIN1                   <-----------HVH21                    <----------DOF2       <-----------GT1--------     <---------GLK1(1)---------->DOF2   --------->MYB46(3)       --------->YAB1<-----------GT1<------   gggattgaaatcagagacaagggtcaaagaaagcttgttctaacaaacaaaactgtgactttctcaagaatgatagctattttccctcactgggctagcc  1685000 --------->MYB52(1) ------>At4g35610 -------ZAT2                                      <---------ICU4             --------->YAB1 -------At4g35610                                 --------->YAB1   ------>ZmHOX2a(1)            <---- -->STY1(2)                 --------->ETT(2)     <---------ATHB12<---------ANAC58       ------>ZmHOX2a(1) ->ANAC58            <----------DOF2       <----------DOF2       <---------ANAC58 <---------HSFC1(2) ->ANAC58     <------ZmHOX2a(1)        <---------ANAC58       --------->GLK1(1)   --------->HSFC1(2) ---STY1(2) <---------TOE2(3)          <---------ANAC58       <---------GLK1(1)   --------->At4g35610   agctaatggtctctaaggagagcctttttgtcaacaggtttgcttctttcaatgatgccaatagatttcctgctcaaactcataagcttcctattgctat  1685100  Previous    Next  AGI:  At5g05630.1    Description:  amino acid permease family protein. similar to amino acid permease family protein [Arabidopsis thaliana] (TAIR:AT1G31830.2); similar to amino acid permease family protein [Arabidopsis thaliana] (TAIR:AT1G31820.1); similar to amino acid permease family protein [Arabidopsis thaliana] (TAIR:AT1G31830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66709.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66706.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47427.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transpor Range:  from: 1682322    to: 1684192    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g05640.1    Description:  nucleoprotein-related Range:  from: 1684567    to: 1685813    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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