Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->At4g35610                                    --------->ZAT2                                    <---------ZAT2                                    --------->At4g35610                                    <---------At4g35610                                    ----------->RAV1(2)                               ------->GAMYB                            --------->MYB52(1)                          --------->MYB46(3)          <---------At4g35610 --------->ANAC58          --------->At4g35610 --------->ANAC58                           --------->ANAC46 <----------DOF2         --------->At4g35610                   <----------DOF2     ------->TEIL --------------------->WRI1<---------WRKY38(1)              --------->ARR11(3) ------->MYC3--------->ANAC58 -------DOF2         --------->GLK1(2)   <---------At4g35610<---------ARR11(3) <-------MYC3--------->ANAC58   tttctttgttttatctgccagagaatcagccaacgcacagctgagcttcaagacaatgctgagaactttgcatccatggcacatgaacttgctaagcaaa  1663700                                                      --------->LBD16                                                     <---------ANAC58                                                     <---------ANAC58                                                     <---------ANAC55(1)                                                     <---------ANAC55(2)                                                <----------DOF2                                              <---------PCF2                                            <---------RAP2.3(3)         <----------DOF2                                            --------->ZAT18          <---------ARR11(3)            <-                                    ------>NtERF2    <---------ANAC46--------->ARR11(3)----------->GT1                                    >>>>>>>>>>>>>>>>>LFY            --------->YAB1     --------->At4g35610                    --------->TOE1(2)       <---------ZAT18<---------AHL20(2)        <-----------RAV1(2)   tggagaagcgaaaatggtggaacatatgagagagttgcagccattgtgggctcttccgtatataaactaattatcttttgtgtttccacaggtgaaaatt  1663800                           ----------->GT1                                         --------->At4g35610                        --------->ARR14(2)                                         <---------ZAT2                        <---------ARR14(2)                                         <---------At4g35610                        --------->GLK1(2)                                        --------->ZAT18                     --------->YAB1                                         <---------ANAC58                    <---------ATHB12                  -------->P            <---------ANAC46                  --------->WOX13(1)        ---------->DOF2                 <---------ANAC58          <---------AHL20(2)            <---------WRKY18(1)           --------->DAG2               <- ---------DOF2  <---------YAB1        <---------WOX13(1)             ---------->DOF2        <--------   tctttttcatgtttatttatcaatcaaatctgtaaaatagattgaccaaagagagcaacccttctaacttgaaaagttgcttgtgagctgatttgaggct  1663900                                                                       <---------ALFIN1                                                             --------->ANAC55(2)    --------->bZIP60(1)                                                             <---------ANAC58       <---------bZIP60(1)                          <---------AHL20(2)                 <---------ANAC58  <---------ANAC58            --------->YAB1--------->AHL20(2)              <---------MYB52(1)   <---------ANAC58 --------->WRKY45        --------->AHL20(2)              <----------DOF2       --------->ANAC55(2) --------->WRKY12    <---------AHL20(2)                  =================HOX2a_HOX2a              <- --------->WRKY38(1)--------->AHL20(2)                   ------>ZmHOX2a(1) <----------DOF2  <-------- ---------DOF2 <---------GLK1(2)                      ---------->ID1 <---------ALFIN1    <---------ALFIN1 -TOE2(3)--------->WOX13(1)                  <---------MYB52(1)    ------>ZmHOX2a(2)--------->ANAC46   gctttgactgtctatcagaattttaaatttaaaaaaaaaaaaacacagtttgttttgtcctttacttgatcccacagctttacttgacgacacacttttg  1664000                                                     <-----------GT1              <---------ZAT14                                                 <----------DOF2                  --------->ZAT14 <--           <---------YAB1               ---------->DOF2                          ----------->RAV1(1)<    <---------YAB1                   --------->TOE2(3)                      <-----------GT1       --- --------MYB46(3)          --------->ICU4        <---------DAG2     <----------DOF2  --------->ANAC46 --DOF2    ----------->HVH21         --------->TOE1(3)         <----------DOF2  --------->ANAC46 ----   tttgttatgagttatgacacatttgactaatgcttaaaaccctaaatcccgctttattccttctccttttctttctagttacacaacacagaacagaaca  1664100                                ---------->DOF2                            <------------CBF                          <---------YAB1                        --------->YAB1                       <---------------AGL15                       ==================================MADS_MADS                       --------------->AGL15                 <---------ARR14(2)                 --------->ARR11(3)     <-------TEIL<---------ARR11(3)     --------------->AtSPL3--------->ATHB51 -------ALFIN1   --------->ARR14(2)      <---------------AGL15                                    --- ---------ALFIN1 <-----------ARR10       --------------->AGL15                             <---------YAB1 ------>AtMYB61 <---------CCA1(2)     <------ZmHOX2a(1)                                    <---------ANAC55(2) ----->ANAC46 --------->ANAC55(2)  *TSS ----------------->AGL2       ---------->DOF2  --------->ATHB12   ccacacattcgtacttacatatctacttataattgaaagaggacctcatatagaaatagccttcgagctagaaaagcacatagaagactgattacgagag  1664200                               --------->GLK1(2)                           --------->ANAC46                        ------>MYB46(1)                        ------>MYB83                     <---------MYB52(2)                     --------->MYB46(3)                     <---------MYB55(2)                    --------->ANAC58                    --------->ANAC58                    -------->P <---------ARR14(2)             --------->ANAC58  --------->ARR14(2)                                                  <-             --------->ANAC58 <---------GLK1(2)                                                    --         ------>NtERF2------->GAMYB                                                            <-----        <----------ID1--------->AtMYB61               <---------MYB52(1)                       <-----      ------>NtERF2--------->WOX13(1)                 --------->DOF5.7(2)             ----------->RAV1(1)     --------->DEAR3(1)----------->RAV1(1)          --------->ANAC46                 --------->ANAC58 ------>CCA1(2)  <------ZmHOX2a(2)  <---------CCA1(2)--------->TOE2(3)               --------->ANAC58   atagacgacgacgacaaggatcaaccaacacagaatccatctctctatctctctacgttatctcttcattcagagagtgcaaatagaacgacagagactt  1664300                                                                                          --------->ANAC58                                                                                          --------->ANAC58                                                                                   --------->ANAC46                                                                            --------->GLK1(2)    <----------DOF2                            --------->YAB1               <-----------ARR10  ------>ZmHOX2a(1)                --------->ZAT2                          <---------GLK1(2) ----------GT1                     <---------ZAT2                          --------->ARR14(2) -------->ID1                   <---------ANAC58                 --------->AtMYB61--------->TOE2(3) ----DAG2                       <---------ANAC46   --------->GLK1(2)       <---------ARR14(2)      <- -----DOF2                      <---------ANAC58  <---------GLK1(2)    --------->LBD16    --------->ANAC46   tttcctcttttcttcttgggaagaggctccaatggcgagctcggttttatcagaatgtggttttagacctctccccagattctaccctaaacacacaacc  1664400                                                                                <---------GLK1(2)                                                                          --------->ARR14(2)                       <----------DOF2                                    <---------ARR14(2)                     ------>MYB83  <<<<<<<<<GATA-2                      --------->LBD16                     ------>MYB46(1)    <---------ALFIN1               --------------->AGL15            --------->TOE2(3)      <<<<<<<<<GATA-4                    <-----------------AGL2       --            --------->TOE1(3)      <<<<<<<<<GATA-3                    ----------------->AGL2       <-           --------->ZAT6          <<<<<<<<<GATA-1                    <-----------------AG        <-- ---------DOF2      <---------ALFIN1 --------->ANAC46------>ZmHOX2a(1)<-----------------AGL1   <-----   tcttttgcctctaaccctaaacccactttcaaattcaatccaccacttaaacctccttcttctcttctcaattcccgatatggattctactctaaaacca  1664500                                                                                        ------>ZmHOX2a(1)                                                                                       <---------ALFIN1                                                                                    --------->DEAR3(1)                                                                                    <---------ALFIN1                                                                                   --------->ORA47(2)                                                                                   --------->ATERF1(1)                                                                                   --------->DEAR4(2)                                                                                --------->ZAT18                                                                                <-------TEIL                                                                                <---------ZAT18                                                                               --------->ALFIN1                                                                              ------->PIF5                                                                              <-------PIF5                                                            --------->ANAC58 --------->TGA1a                                                            --------->ANAC58 --------->ZAT2                              --------->MYB46(3)           <---------LBD16   <---------ZAT2                            <-----------GT1       --------->LBD16    <-------TEIL <---------ATERF1(1) ------->ARR14(2)        <----------DOF2          <---------LBD16----------->ARR10<---------RAP2.3(1) --------ARR14(2)    <---------ALFIN1            <---------TOE2(1)  --------->CCA1(2)------>NtERF2 ----ZmHOX2a(1)      --------->REM1(1)           <---------TOE1(1) --------->ARR11(1)<---------ATERF1(1) ----LBD16   <-----------RAV1(1)     --------->ZAT14 <------ZmHOX2a(1)     <-----------RAV1(2)   ggaactgggcattgaatgtggcaacacctttaacaactcttcagtctccatccgaggaagacacggagagattcgacccaggtgcgcctcctcccttcaa  1664600  Previous    Next  AGI:  At5g05570.1    Description:  transducin family protein / WD-40 repeat family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO50131.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC75571.1); similar to hypothetical protein OsJ_024676 [Oryza sativa (japonica cultivar-group)] (GB:EAZ41193.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain Synaptobrevin; (InterPro:IPR001388); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 1656567    to: 1663930    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g05580.1    Description:  FAD8 (FATTY ACID DESATURASE 8); omega-3 fatty acid desaturase. Identical to Temperature-sensitive omega-3 fatty acid desaturase, chloroplast precursor (FAD8) [Arabidopsis Thaliana] (GB:P48622); similar to FAD7 (FATTY ACID DESATURASE 7), omega-3 fatty acid desaturase [Arabidopsis thaliana] (TAIR:AT3G11170.1); similar to omega-3 fatty acid desaturase [Descurainia sophia] (GB:ABK91880.1); similar to omega-3 fatty acid desaturase [Descurainia sophia] (GB:ABK91881.1); similar to chloroplast omega-3 fatty acid desaturase [Brassica juncea] (GB:CAB85467.1); contains InterPro domain Fatty acid desaturase, type 1; (InterPro:IPR005804); contains InterP Range:  from: 1664135    to: 1666528    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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