Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <---------ARR11(3)                                                                     --------->ARR11(3)                                                     --------->AHL20(2)                                                     <---------AHL20(2)                    --------->HSFB2a(1) --------->At4g35610   --------->ATHB12             --------->AHL20(2)                    --------->ARR11(3) ---->YAB1          --------->GLK1(1)               <---------AHL20(2)      <----------DOF2<---------HSFB2a(1) ---DOF2         <---------TOE1(2)      ---------->DOF2     ------>ZmHOX2a(1)             <---------ARR11(3) >ID1       <-----------HVH21------->TEIL--------->DAG2     <---------At4g35610--------->ZAT6       <   ataagctcagacttcgtcccagatttcattgcatctagcacagaaagtgtttgattaaattcctctgagaacatctctctttcactaagcgaaatcttcc  1641100                                                                  --------->GLK1(1)       <---------MYB52(1)                                           <---------ZAT14   --------->At4g35610         --------->LBD16                                     <---------MYB52(1)    --------->YAB1              <---------LBD16                 ------->TEIL      <---------ANAC58        --------->ATHB12          <---------ARR14(2)         <---------DAG2            <---------ANAC58     --------->WOX13(1)           --------->ARR14(2)         <----------DOF2<----------DOF2    --------->ZAT14<---------ATHB12  <-----------GT1      <--- ----------DOF2 <-----------GT1    <---------ANAC46   ------------>CBF  xxxxxxxxxxxxxxxx>smallRNA(s)   gactttcgatacttttttgaacctcactttcttcattccgttcagtttagagcctcgacaatcatcggaactcgtttgaaacctctctatccggtttcta  1641200                                        <<<<<<<<<TBF1                                     <<<<<<<<<TBF1  ------------>CBF                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               <<<<<<<<<TBF1  <<<<<<<<<TBF1      ------------>CBF       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               <----------DOF2    ----------->HVH21       <<<<<<<<<TBF1  <<<<<<<<<TBF1                         <---------DAG2 ------TOE2(3)   ------>ZmHOX2a(1)<<<<<<<<<TBF1  <<<<<<<<<TBF1     ------>ZmHOX2a(1) --------->YAB1   atgtaagtgacaattcttcctactcacttcttcttcttcttcttcttcttcttcttcaatgttatcttcctctgtctcgcttacttttcataaaacgatt  1641300            ---------->DOF2      <---------TOE2(2)            --------->AHL20(2)      <---------TOE1(2)            <---------AHL20(2)     <-----------RAV1(2)           <---------AHL20(1)    --------->LBD16                --------->AHL20(1)   --------->ANAC46       --------->GLK1(2)                                                        --   --------->ANAC58      <---------GLK1(2)                                                         <-   --------->ANAC58   --------->YAB1                ---------->DOF2                              ----  <---------LBD16  --------->CCA1(2)<---------AHL20(2)      <---------TOE2(3)        ---------->DOF2   tcgacccgcaggtttaaagagaaatgagaatctcaaataaaattttgaaaatagaaaagactagggtttaagcgctaagacaacttggaaagagcgggag  1641400                                       <---------ANAC46                   ----------------->AGL1                                      <---------LBD16                    -------->P                                    <---------ANAC58                     <---------At5g28300                                <---------MYB52(1)                    <---------MYB52(2)                            <---------ANAC58                    --------->ANAC58        <-----------GT1     <---------ANAC58                    --------->ANAC58                <----      --------->AHL20(2)    <---------ANAC46                   <-------TEIL           ----------->GT1      <---------AHL20(2)<------------CBF                       --------->SPL7   ------>ZmHOX2a(1) --------->GT1    ------>MYB46(1)   <---------ANAC58     --------->LBD16<-----------GT1     <-------- --------ZAT6     ------>MYB83<-----------RAV1(1)       <-----------RAV1(2)     <---------LBD16<----- ------->GT1   ------------>CBF<-------GAMYB          ------>NtERF2 ------>NtERF2   ---------->DOF2   agtgtaaattaaacttcaccaatctccattgcctgttggcttcggagaaaaaatgcctccaggggttcgccaacttaccgtcctcggaaagtttaaacct  1641500                                                                                <---------ANAC58                                                                                <---------ANAC46                                                                         <---------ZAT14                                                --------->ZAT6           --------->ZAT18                                             ===========================HOX2a_HOX2a                                       --------->HSFB2a(1)             <---------At4g35610                                       <---------HSFC1(2)              --------->ZAT2                                       <---------HSFB2a(1)          ------>ZmHOX2a(1)                                      <---------YAB1      ==============HOX2a_HOX2a                                --------->MYB52(1)     <-----------GT1 --------->At4g35610                        ----------->GT1--------->HSFC1(2) ------>ZmHOX2a(1)     <---------ANAC58               --------->HSFC1(2)  --------->LBD16    <-----------GT1  <---------ZAT2 ------DOF2    <---------HSFC1(2)<---------LBD16--------->YAB1    ----------->RAV1(2) ---GT1--------->MYB46(3)--------->At5g28300 ------>ZmHOX2a(1)   <------ZmHOX2a(2) ----DAG2  --------->DEAR3(1)  <-----------GT1 <---------ATHB12 <---------ARR14(2)           <-------   ttcggtctaatcgccgaagctactgatggtaaatcaccggatgattcctatcagtatttcctcttcgatcctgagctcactggcgagcgagatgatgctg  1641600                                   <-------MYC3                                   ------->PIF5                                   ------->MYC3     <---------ICU4                <-------PIF5              --------->ANAC58     --------->YAB1            --------->ZAT18               --------->ANAC58    --------->ICU4       <------NtERF2<---------ARR11(3)   <--------P                              --    <---------ATHB12  <------NtERF2------->MYC2          ----------->GT1                          --- --At4g35610       <---------LBD16 <-------MYC2 --------->LBD16                 <---------YAB1    <--   atggcaatgatgccaacttctcgcggcagagagagcacgagctcttcatccgagacaactggtaagaaatgtatacaatttgctgattactctataactc  1641700            ------->TEIL    --------->bZIP60(2)                                                             <---------MYB52(1)  <---------ALFIN1                                                                 <---------SPL7 ------->ANAC46                                                         <---------HSFB2a(2)     <---- ------>ZAT14                                 ------>ZmHOX2a(1)         --------->HSFB2a(2)  <------- -------ZAT14        --------->ZAT6        <-----------GT1       <----------DOF2 ----------------->AGL1   tgcaccacttcatgaatttgttatcacttcaatttcgaatgtgttttcctattcttcaagtttgcctctttcttccagtaatgtccgtaagggttatgct  1641800                                        <---------At4g35610                                   <---------ARR11(1)                                   <---------ARR14(2)                                   <-----------ARR10                                   --------->ARR14(2)                                   ------->TEIL                 ----------->RAV1(2)                                  <---------ARR14(1)  --------->MYB52(2)                                  <---------CCA1(2)  <-------TEIL  --------->MYB52(1)                                <---------ANAC55(2) <---------ARR14(2)                                <---------ANAC58  <---------MYB46(3)                                <---------ANAC58 <---------ANAC58 ----------->HVH21                    --------->ARR11(3)  --------->At4g35610     <---------At4g35610              --------->ATHB12  --------->ANAC55(2) <---------MYB52(1)           --------->ATHB12 --- ------DOF2  <---------YAB1   <-----------GT1    <---------ANAC58 ----------->TGA1      <---------YAB1 --YAB1      <---------AHL20(2)<---------TOE2(3)<---------LBD16------->TEIL     <---------YAB1-------   ttagtagaagctaatttcattggatattggtataacgtatctagctgaattgcggttcgtttctgtacctgacgatgaaattttgatttgatgatagcat  1641900                                                        <---------TOE2(3)                                                        <---------TOE1(3)                                                  <---------MYB52(1)                       ------>ZmHOX2a(1)          <------NtERF2                   --------->ARR14(2)            ------>NtERF2                   <---------PCF2                <-----------TGA1                   <---------TCP16(1)            <---------RAP2.6(3)                   <---------ARR14(2)           --------->ATERF1(2)                   <---------PCF5               <---------bZIP60(1)                 --------->LBD16                --------->bZIP60(1)                 <---------TOE1(2)         --------->At4g35610            <---------ARR14(2)             <---------At4g35610--------->GLK1(1)        ---------->ID1 ------>GLK1(2)<---------LBD16   <-----------GT1<---------ATERF1(2)                <----------DOF2 -->YAB1  <---------MYB46(3)   <----------DOF2  --------->RAP2.6(2)            ---------->ID1      <-   aatctggacaagcggttcgcgggtcctcaagcgttttaccttgtcttctgccgtcattaaggtgatttccattagaattttggctctttgtctctcaagt  1642000  Previous    Next  AGI:  At5g05560.1    Description:  APC1 (EMBRYO DEFECTIVE 2771); ubiquitin-protein ligase. similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ64951.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41387.1); similar to hypothetical protein OsI_018905 [Oryza sativa (indica cultivar-group)] (GB:EAY97672.1); contains InterPro domain Proteasome/cyclosome, regulatory subunit (InterPro:IPR002015) Range:  from: 1641453    to: 1654757    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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