Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       --------->At4g35610                              --------->At4g35610                              <---------At4g35610                     <---------ARR11(3)           --------->ARR11(3)                     --------->ARR11(3)    --------->At4g35610 <---------ANAC55(2)              --------->At4g35610    <---------At4g35610   <---------ARR11(3)  ---------->DOF2      <        ---------->DOF2 <----------DOF2    <---------At4g35610 --------->ANAC55(2)               <--- ------At4g35610 <------ZmHOX2a(1)---------->DOF2 <---------ARR11(3)      ---------->DOF2       <----   actcatcggagaaagcagaggaagagctttcgagctcaaagctgaagcagaagatgttgaatatcacttgatggaagaaagtaaaggctggactacttgt  1635900                             ------->TEIL   ------>NtERF2          --------->MYB46(3)                                                   ------  ------>NtERF2        <---------WRKY45                                                <---------MYB46(3)  --------->ANAC46     <---------WRKY38(1)                                            <---------WOX13(1)  --------->LBD16      <---------WRKY12             <---------ICU4                  --------->ATHB12 --------->LBD16      --------->WRKY18(1)          --------->ICU4                  --------->ICU4 ---------LBD16      <-----------HVH21          <------ZmHOX2a(1)   --------->GLK1(2) <---------YAB1 ------ARR14(2)     --------->LBD16       <---------ANAC58 ----------->HVH21       <---------YAB1 -----CCA1(2)     <---------LBD16         <---------ANAC58 --------->O2          --------->ANAC55(2)   atcccggccaaatcgattactccggtcaacgaatgtactatatgccttgaggaattatgccacgacgaagaatctatagagacacatgattgttgtcatg  1636000                                                         <-----------TGA1                                                        <---------bZIP60(1)                                                        --------->bZIP60(1)                                                        --------->ETT(2)                          <---------ARR14(2)           ---------->ID1                          <---------GLK1(2)      ------>ZmHOX2a(1)                          --------->ARR14(2)  ---------->ID1                      <------NtERF2     <---------ARR11(3)                                      <----  --------->YAB1    <---------DEAR3(1)  --------->ARR11(3)      ------>ZmHOX2a(1)      <---------TOE1(3) --->ICU4      <----------DOF2      ---------->DOF2<----------DOF2                     <---------TOE2(3)   tttttcataaactctgtctttggcgctggattcggaccaaaagctcttgtcctctttgtcgtcatcctatctattcaagacccaagttttaggttttttt  1636100                                                                               <---------ANAC58                                                                               <---------ANAC46                                                                               <---------ANAC58                                                                           <---------ANAC58                                                                           <---------ANAC58                                                                  <---------------AGL15   <---------DAG2       ----------->GT1        --------->KAN4(2)  --------------->AGL15          <---   <----------DOF2    <---------ANAC46        <----------TaMYB80 <-----------------AGL3          ---- -----YAB1         <----------DOF2         <-------TEIL          <-----------------AGL2  <---------ARR11(3)   tatagcttttttggtattcttcttttgtgtaaaaatgtccaaagatgcatattccacatttctacttgctgtatatagcttgcttgttcaacatctcttg  1636200                  --------->AHL20(2)                 <---------AHL20(2)                 --------->AHL20(2)              <---------AHL20(2)          --------->ATHB51          --------->YAB1          <--------ATHB1          -------->HAHB4          <--------HAHB4                                                                      <------          <---------ICU4                                                                      <------         <---------ATHB51                                                                     <------         <---------YAB1                                                                   <---------ANAC46         --------->ICU4              ---------->DOF2                                      <---------ANAC58         --------->AHL20(2)        ------->GAMYB                                          <---------ANAC58       --------->YAB1             --------->ANAC58                                     <---------TOE2(3)      --------->AHL20(2)          --------->ANAC58                                 <------------CBF      <---------AHL20(2)     --------->ANAC58                                     <---------ICU4     --------->AHL20(1)      --------->ANAC58                                     --------->ATHB51     <---------AHL20(2)      --------->ANAC46                  ---------->DOF2   --------->ICU4     --------->AHL20(2)    ---------->DOF2                ----------->TBP        <---------ATHB12 ------ANAC46<---------AHL20(2) --------->MYB52(1)        <---------YAB1         <---------ATHB51 ------->GT1 --------->AHL20(2)<----------ID1        ----------->GT1             <---------YAB1    *TSS   tgtaaaatttaataattaaataaataagtgaaagcaacgaaaagacatatagacctagttataaaaaaagatgcccaaggcccataattgtggtttgtgt  1636300                                                                                         <---------HSFC1(2)                                                                                      <---------At4g35610                                                                                   <------NtERF2                                                                                  ------>NtERF2                                                                                 --------->RAP2.3(2)                                                                                 --------->TGA1a                                                                                 <---------ATERF1(2)                                                                                 --------->RAP2.3(3)                                                                                 --------->DEAR3(1)                                                                                --------->RAP2.3(1)                                                                                --------->ERF1                                                                                --------->RRTF1(1)                                                                                --------->ATERF1(1)                                                                                <------NtERF2                                                                               --------->ABI4(1)                                                                               ------>NtERF2                                                                               <---------ATERF1(1)                                                                              --------->RAP2.6(2)                                                                              --------->RAP2.3(2)                                                                              --------->DEAR3(1)                                                                              --------->RRTF1(3)                                                                              <---------DEAR3(1)                                                                              --------->RAP2.3(3)                                                                              --------->ATERF1(2)                                                                              --------->DREB2C(2)                                                                              --------->RRTF1(2)                                                                             --------->ORA47(2)                                                                             --------->RAP2.6(1)                                                                             --------->RAP2.3(1)                                                                             --------->ATERF1(1)                                                                             --------->RRTF1(1)                                                                             <------NtERF2                                                                             --------->ERF1                                                                             --------->DEAR4(2)                                                                            --------->DREB2C(1)                                                                            <---------DREB2C(1)                                                                            <---------ATERF1(1)                                                                            <---------DEAR4(2)                ----------->HVH21                                           --------->At4g35610               <-------MYC3                                                 ------>NtERF2--------->At4g35610               ------->MYC3                                                 <---------RAP2.3(1)              <---------ANAC58                                             --------->DEAR3(1)              --------->ANAC58                                             <---------DEAR3(1)              <---------O2                                                 --------->RAP2.6(2)              --------->ANAC46                                             --------->RAP2.3(2)              <---------ANAC46                                             --------->RAP2.3(3)              <---------ANAC58                                            --------->DEAR4(2)              --------->O2                                                --------->RRTF1(1)              <---------TGA1a         --------->ALFIN1                    --------->RAP2.6(1)              --------->TGA1a        <-------MYC3                         --------->DEAR3(2)              --------->bZIP60(1)    ------->PIF4                         --------->MYB46(3)              <---------bZIP60(1)    <-------PIF4                         --------->RAP2.3(1)   -----              <---------bZIP60(2)    ------->MYC2                         --------->ATERF1(1)   <----              --------->bZIP60(2)    ------->MYC3                         --------->ERF1 <---------HSFB2a(1)              <---------ANAC55(2)    <-------MYC2                        --------->At4g35610    <----              --------->ANAC55(2)    <-------MYC4                        <---------At4g35610  <------         --------->bZIP60(1)         ------->MYC4                        --------->ZAT2  --------->HSFC1(2)         <---------bZIP60(1)         ------->PIF5                 <---------ANAC58<-----------HVH21       <---------ZAT14               <-------PIF5                 <---------ANAC58<---------RAP2.6(3)       --------->ZAT14<---------YAB1--------->ANAC55(2) <----------DOF2  <---------ATERF1(1)  <------ ---ANAC46    --------->ANAC58     ------->TEIL         ===================================bZIP_DOF - ---ANAC58  ------------->DYT1    <------------OsbHLH66 <---------DAG2   <---------ZAT2  --------->HSFB2a(1) ---ANAC58<-----------HVH21 <---------GLK1(2)--------->WOX13(1)<---------DEAR3(1)--------->ATERF1(2)<   gtgtgtgtgtgaagtcacgtgaccattatagattatgcacgtgttgtcaatctgtctcctttacgagggcgagcgagccgccgccgtcagaagcttccgt  1636400                                    <-----------HVH21                                   --------->O2                                   ========================MYC_MYB                                   ==================================bZIP_DOF                                   <---------O2                                   --------->TGA1a  <------MYB83                                   --------->ANAC58 <------MYB46(1)                                   --------->ANAC46--------->MYB111(1)                                   --------->ANAC58--------->MYB59                                   --------->bZIP60(2)                              --------->ANAC58    <--------P ---->ARR14(2)           ------->PIF5           <---------MYB46(3)           <---------STY1(2)     -- -----MYB52(1)           <-------PIF5          --------->ALFIN1              --------->At4g35610  <-- -----ARR14(2)          <---------ANAC58       <---------ZAT6               --------->MYB52(2)    <-- ---ANAC58    --------->WRKY18(1) <---------LBD16 <---------MYB55(1)      <---------MYB52(1)--------- ---ANAC58   <-----------HVH21--------->ANAC58 <---------------AtSPL3--------->ANAC46       <-------- -------->At4g35610     <---------ANAC58       <---------AtMYB61    --------->SPL7    <-------TEIL<-- ---------At4g35610   <------ZmHOX2a(1) <------NtERF2     <----------DOF2 --------->DOF5.7(2)     <--   tctgctgtctgaatcggtcatggaggacgtgctagccacggcagagggagtggtaggtctctttttctcatacgacgttagctagaaattcatggattcg  1636500         <---------ANAC58         <---------ANAC58        ---------->ID1       <-----------GT1 ------->HSFB2a(1)             <---------ARR11(3)                                          ---------- -------TOE2(3)                --------->ARR11(3)                               ---------->DOF2 ----- -------TOE1(3)          ----------->GT1          <------MYB83              <---------ANAC46 -------- >ARR14(2)              --------->MYB59           <------MYB46(1)     <---------TOE1(3)<------MYB83 -ARR14(2)       <---------ATHB12                --------->MYB59      <---------TOE2(3)<------MYB46(1) -------TOE1(2)  <-----------------AGL1   <----------DOF2          <---------REM1(1)  --------->MYB59 -------TOE2(2)  <-----------------AG  ----------->GT1     ---------->DOF2 --------->At4g35610 ------   aaggttgtttttcgttctaatcaattttggtaaaatctatggggttttaagtaggttttagtaaagctggtgaaggtagcgcaaaagctaggtctaaaag  1636600                                                                                   ---------->DOF2                                                                                  <------NtERF2                                                                                <---------ANAC46                                                   ------>ZmHOX2a(2)            --------->RAP2.3(2)                                                   ==========================HOX2a_HOX2a      <------MYB46(1)                                                  <---------HSFB2a(1)          <------NtERF2 --------                                                  <------ZmHOX2a(2)            --------->RRTF1(1)                                                  ===========================HOX2a_HOX2a     <-------                                                  <---------GLK1(1)            --------->RAP2.3(1)                                                 --------->ARR14(3)           <---------ATERF1(1)                                                 <-----------ARR10            <---------DEAR4(2)       <---------ARR14(2)                        --------->ARR11(3)           <---------RAP2.3(1)       --------->ARR14(2)                        <---------ARR14(2)           <---------ORA47(2)    --------->ANAC46                             --------->ARR14(2)          <---------DEAR3(1)    <-    --------->ANAC58                             <---------ARR11(3)          <---------RAP2.3(2)  <--    --------->ANAC58                       --------->ZAT2                    <---------RRTF1(3) <----  --------->MYB52(1)                   --------->MYB52(1)     --------->ANAC55(2)------>NtERF2<------MYB83 ------------->TaNAC69(2)  <---------GLK1(2)     <---------ARR14(3)      ---------->DOF2 --------->ATHB12 ------>GT1                <---------ARR11(3)   ===========================HOX2a_HOX2a--------->YAB1< -->DOF2                   --------->ARR11(3)  ----------->ARR10      ------>ZmHOX2a(1) <---------YAB1 --->DAG2        <------ZmHOX2a(1)<---------YAB1<------ZmHOX2a(1)   ------>ZmHOX2a(2)--------->ICU4<-   gtgaaaacggaacttggaaggagtttttagatttttatgacaaacagctaggatcttcgagcttaagtgatccttcaaagcggcgcaaagatgatttggt  1636700                                                                             -------->HAHB4                                                                             --------->YAB1                                                                            <---------YAB1             --------->ANAC46                                               --------->ICU4          <---------ZAT18                                                 --------->YAB1          --------->ZAT14          <---------TOE1(2)                      -------->HAHB4      <-----------GT1         --------->CCA1(2)                           <---------ICU4 ->MYB111(1) --------->ANAC58--------->ARR14(2)                       <---------AHL20(2) --AtMYB61<---------ZAT14    <---------ARR14(2)                      --------->AHL20(2) --------ANAC58              <---------ARR11(3)                   <---------DAG2 ----NtERF2  --------->ANAC58--------->ARR11(1)        --------->ANAC46  --------->ICU4 -----RAP2.6(2)              --------->ARR11(3)        --------->ANAC58  <---------ATHB51        <--- ----------DOF2            ----------->ARR10           --------->ANAC58--------->YAB1     <---------- --------ANAC58       ---------->DOF2      ---------->DOF2        <----------DOF2--------->GLK1(2)   ggcttttcttactacactcaagaagaaagaagatttgcaggtttcaaaagacaaaacacacaactcaactttttaataatgataatctcaagttacaaac  1636800  Previous    Next  AGI:  At5g05530.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G18110.1); similar to Y54E10BR.3 [Caenorhabditis elegans] (GB:NP_491091.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 1635479    to: 1636192    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g05540.1    Description:  exonuclease family protein. similar to exonuclease [Arabidopsis thaliana] (TAIR:AT5G67240.1); similar to OSJNBb0059K02.13 [Oryza sativa (japonica cultivar-group)] (GB:CAE04503.1); similar to H0212B02.12 [Oryza sativa (indica cultivar-group)] (GB:CAH68267.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Exonuclease; (InterPro:IPR006055); contains InterPro domain Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520) Range:  from: 1636299    to: 1638940    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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