Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        <----------DOF2                                                                                      ------>ZmHOX2a(1)                                                                                   ---------->ID1           <---------HSFB2a(2)                                                   <------MYB83    --------->YAB1                                                               <------MYB46(1) ----------DOF2                                                                 --------->MYB59 --------ANAC58                              ---------->DOF2              ------>ZmHOX2a(1)        <- --------ANAC58                 <----------DOF2             <----------DOF2   <---------MYB52(1) ----   tgcttttcatattctagcagagagagttcgtagacttttttaagttataaagagcaagcgttctttacccaaattcctctgtttggtccttttgttatat  1629300   <---------------AtSPL3                                       --------->TOE2(3)               -----   <---------------AtSPL8                                    <-----------GT1                    <----   --------------->AtSPL8                                 <---------ICU4                        -----  <---------YAB1             <---------TOE1(2)--------->At4g35610                      <-----------GT1 --------YAB1               ------>ZmHOX2a(1) ----------->RAV1(2)               --------->ANAC55(2) ------->GT1      <---------ICU4<----------DOF2          --------->ICU4      <---------AHL20(2)<-----   ggttattagtacctcatacatcatcacatcctagctttgtccgaaaacatctgaaactaatttttacattattctataatttaagtattttactcgcata  1629400                                                                                                    -                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   --                                                                                         <---------bZIP60(1)                                                                                         --------->ANAC58                                                                                         --------->O2                                                                     ---------->DOF2     --------->bZIP60(1)                                                                 ----------->HVH21       --------->ANAC58                                                                 --------->WRKY12        ----------->GT1                                                                 --------->WRKY38(1)     --------->ANAC55(1)                                                                <---------MYB52(1)       <---------ANAC55(2)                                                               --------->At4g35610       --------->ANAC46 ---->ARR14(2)                                                 <-------GAMYB             --------->ANAC55(2) -----ARR14(2)                                                 <---------At4g35610      <------------ ---->ARR11(3)             XXXXXXXXXXXXXXXXXXXX>MIR415--------->ARR11(3)             <-----------HVH21 ----CCA1(2)    <---------ARR11(3)                    <---------AHL20(1)          <------NtERF2 -----   tattgagtcttcttagaagatgtattgaacagagcataaacaaaacaatagtttaatatatactccgttgacaaagaaaatggtggcagtcacgtaataa  1629500           <---------ALFIN1          <------NtERF2         ------>NtERF2        --------->RAP2.3(3)     ------->GAMYB    --------->MYB46(3)    <---------MYB52(2)    <------------AtMYB77                                 <-------MYC3   <---------At4g35610                                  <---------O2   --------->At4g35610                                  --------->ANAC58   <---------ZAT2                                       --------->ANAC46   --------->ZAT2                                       --------->ANAC55(1) -------->LBD16                                         --------->O2 ------->ANAC46                          --------->ATHB51------->MYC3                              <- ------->ANAC58                          <---------ICU4 <---------TGA1a                         <---- ------->RAP2.3(2)                       <--------HAHB4 --------->TGA1a                   <---------AHL20(2) ------->RAP2.6(2)                      <---------YAB1  --------->ANAC58                  --------->AHL20(2) ------->ANAC58                         --------->ICU4 <---------TOE1(2)              --------->AHL20(2) -----------TaNAC69(2)                --------->YAB1  <---------ALFIN1                <---------AHL20(2) ---->ANAC46                       --------->YAB1  ----------->HVH21             --------------->AGL15   gccgcaactgcccccatttcatacaatacatgtataatcttcataattagtcgctcacacgtttcatacaatttgtcaaatttctcaaaaaattaaacta  1629600                                                   -------->P                                                  <-----------GT1                ------>MYB83                    <---------ANAC58                ------>MYB46(1)        --------->ANAC58       --------->AHL20(2)              --------->ANAC46      <<<<<<<<<ARR2                    --------->ANAC58             *TSS  ------------>CBF                  --------->ARR14(2)----------->RAV1(2)     >>>>>>>>>TBF1       --- ----------GT1 --------->ANAC46     <---------ARR14(2)<---------LBD16      >>>>>>>>>TBF1        <---- -----ICU4  --------->MYB52(1)   ----------->TBP<---------ANAC58 --------->ANAC46           ---------   attacacaatcaaataccagcctctatatgtttctatatatacgcatatttcttacccctgaatcacacatcaagaagaagaagaagtttaagaagcaga  1629700        <---------MYB52(2)                                                                         --       ----------->GT1                                                                          -----       --------->ANAC55(1)                                       <---------DEAR3(1)          ------>ZmHOX2a(1)       --------->ANAC58                                         <---------ABI4(1)           <--------       --------->ANAC55(2)                            --------->ATHB12                    ------>ZmHOX2a(1)       <---------ANAC55(2)                            <---------ICU4--------->ALFIN1  --------->ANAC46       --------->ANAC58                              ------>ZmHOX2a(1)     <---------WRKY12 <xxxxxxxx       --------->ANAC46                              <---------YAB1<------NtERF2    --------->ZAT6<-- -------->GT1                                       --------->TOE2(3)    ----------------------->TaNAC69(2) -----ANAC46                                  <-----------TGA1<---------DEAR3(1)    <---------ALFIN1 >At4g35610                   -------->P <---------MYB52(1)  --------->SPL7<---------WRKY38(1) <-----   gtgtataacaagtaacatggactcaagagccttacccttctccgttctcgtcatcctcattgctacggcggtgttggccaacgcttacactcctcctcct  1629800          --------->ANAC46        <---------ALFIN1        ------->GAMYB       <---------MYB55(2)       <---------MYB111(2)       <---------MYB52(2)       --------->MYB46(3)                                               ------>ZmHOX2a(1)      ------>MYB46(1)            --------->LBD16                       --------->TOE1(2)      -------->P        --------->At5g28300                            --------->TOE2(2)      ------>MYB83      --------->LBD16                            --------->WOX13(1)    <---------MYB111(2)<---------ANAC46                    <---------ZAT14  ------>ZmHOX2a(1)    <---------ANAC58       --------->ALFIN1 <---------ZAT6                <------- ---->ZmHOX2a(1)       <---------ANAC58   <------NtERF2  <---------------AtSPL3 <---------ARR14(2) ->ZmHOX2a(1)        ------>NtERF2  ---------->DOF2      <---------------AtSPL8 --------->ARR14(2)  < -ALFIN1--------->AtMYB61 --------->REM1(2)  --------->At4g35610<-----------HVH21      <------ZmHOX2a(2) xxxxxxxxsmallRNA(se3) ----------->GT1 --------->At4g35610 --------->ZAT18 ----------->RAV1(1)------- -------ALFIN1    ----------->RAV1(2)  <---------At4g35610 --------->ZAT14----------->HVH21 <-------- ----ALFIN1--------->DEAR3(1)    <---------LBD16       <---------AtMYB61======================HOX2a_HOX2a   cctcctccaaccaccgcataccctgccgtgaaaaccgtggaagcggcagtggaaggaatggtgtactgtcaatcctgcgacaaattcggatcatggtcat  1629900     <---------At4g35610                              --------->ANAC58     --------->At4g35610                              --------->ANAC46   <------NtERF2                                      --------->ANAC58  <------NtERF2                                   --------->ATHB12  --------->LBD16              --------->YAB1     --------->YAB1 <---------DEAR3(1)    <---------At4g35610     --------->YAB1 --YAB1                --------->At4g35610   --------->ANAC58             ---------->DOF2 ---------LBD16      <------NtERF2           --------->ANAC58          --------->HSFB2a(2) -->ATHB12          --------->LBD16    --------->At4g35610             <---------HSFB2a(2)      ----- ---HVH21         <---------LBD16     <---------ARR11(3) ----------->RAV1(1)                   ------   tggccggagcagaagctatagccggagctaaaatcagcattatctgcaagaatcataggcaacaagtgagtttctacaaagtctttcgaactgattccta  1630000                                                                       ------>NtERF2                                                                 <---------ANAC58                                                         ------>ZmHOX2a(1)    --------->ZAT2                                                      ------>MYB83    <---------ANAC58                                             XXXXXXXXXXXXXXXXXXXX>MIR3440B-5P--------->ANAC58                     <---------TOE2(3)       <---------ANAC58    <---------ANAC58  <---------CCA1(2)               <---------At4g35610           <---------ANAC46   <---------ICU4<---------ZAT2 ---->SPL7     --------->At4g35610           <---------ANAC58  <---------YAB1--------->ANAC58    ---- >ZmHOX2a(1) <---------ZAT18          <---------ALFIN1------>MYB46(1) <---------ANAC58       ------>ZmHOX2a(1)   cggccatttctatggtgagctcaaaggtttcaagatgactccacatttcttggaccatcctcttcattcttgccgagccaagctcgtctcttctcctcgt  1630100                                                --------->ANAC46                                  <---------HSFB2a(2)                                              <-                         <---------TOE2(3)    <---------ALFIN1                                <------                        --------->YAB1    <---------At4g35610                             ------>NtERF2                  ----------->RAV1(1)     --------->At4g35610               --------->ZAT14  --------    --------->ZAT14  --------->TOE1(3)    --------->GLK1(1)                 <---------ZAT14 <--------    <---------ZAT14  --------->TOE2(3)    <---------GLK1(1)                 <---------ZAT18 <-------- ----->REM1(2) --------->HSFB2a(2)--------->HSFB2a(2)                       --------->ZAT18 ---------   gaagactgcaatctcttctccaacattaacaatgctctagatggagctccactccgatatgaagagaagaggctcaagtggactaactatgaggccgtga  1630200  Previous    Next  AGI:  At5g05490.1    Description:  DIF1/SYN1. Identical to Sister chromatid cohesion 1 protein 1 (SYN1) [Arabidopsis Thaliana] (GB:Q9S7T7;GB:Q3E9L1;GB:Q9SQI1); similar to ATRAD21.3/SYN4 (ARABIDOPSIS HOMOLOG OF RAD21 3) [Arabidopsis thaliana] (TAIR:AT5G16270.1); similar to Os05g0580500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056426.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41418.1); contains InterPro domain Rad21/Rec8 like protein, C-terminal; (InterPro:IPR006909); contains InterPro domain Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910) Range:  from: 1624207    to: 1629235    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g05500.1    Description:  pollen Ole e 1 allergen and extensin family protein. similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT2G33790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41410.1); contains InterPro domain Pollen Ole e 1 allergen and extensin (InterPro:IPR006041) Range:  from: 1629668    to: 1630397    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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