Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 --------->HSFB2a(2)                                               <---------ANAC46        <-----------RAV1(1)                                               <---------HSFB2a(2) <---------SPL7                                           <---------ARR14(2)      --------->ZAT14                                           <---------GLK1(2)       <---------ZAT14                                          --------->HSFB2a(1)     --------->DEAR3(1)                                          --------->HSFC1(2)    ------>NtERF2                                          <---------HSFC1(2)    --------->LBD16                                      --------->LBD16          <---------ALFIN1                                     <---------HSFC1(1)        ------------------>SPL14                                 --------->KAN4(2)            --------->ATERF1(1)                                --------->HSFB2a(1)           <------NtERF2                                <---------HSFB2a(1)         <---------ARR14(2)                                --------->HSFC1(2)          --------->ARR14(2)                   ----                                --------->KAN4(1)          <---------At4g35610                   ----                               <---------KAN4(2)--------->LBD16--------->DEAR3(1)               -----                             --------->LBD16--------->GLK1(2) --------->RAP2.3(1)              ------                           --------->HSFB2a(2)<---------LBD16<---------RAP2.3(1)              <------                    --------->O2<---------KAN4(1)          --------->At4g35610               ------>NtERF2                    <---------TGA1a  --------->HSFB2a(2)   --------->ZAT2                    --------                    --------->TGA1a  <---------HSFB2a(2)   <---------ZAT2                   ---------                    ===============bZIP_DOF--------->ARR14(2)<---------ATERF1(1)         --------->ANAC46       <------ZmHOX2a(1)<----------DOF2   <---------HSFB2a(1)------>NtERF2             <---------ALFIN1 ------>DOF2        <---------O2<---------HSFC1(2)        <---------ATERF1(1)      --------->At4g35610   aaagagcgaggaatacctagagacgtctttccgaacattccagaagattccggatggactcggctccgccgtactggtgcgaagtagctccactccgccg  1623800                                                     <---------------AtSPL8                                                   --------->WRKY18(1)                                                 <------MYB83                         --------->ZAT2                                                 <------MYB46(1)                      <---------ZAT2                                                --------->SPL7                        <---------At4g35610                                             <---------ANAC46                         --------->At4g35610                                            ------>NtERF2                       --------->CCA1(2)                                           <---------ANAC46                    <---------ARR14(2)                                          <------NtERF2                      ----------->ARR10                                          --------->ATERF1(1)               --------->RAP2.3(1)                                         <---------ERF1                     <------NtERF2                                         <---------RAP2.3(1)               <---------RAP2.3(1)                   ------>ZmHOX2a(2)     <---------ORA47(2)                ------>NtERF2            <---------ARR14(2)           <---------ATERF1(1)               <---------ATERF1(1)            --------->ARR14(2)           <---------DEAR4(2)                <---------DEAR4(2)            --------->ARR11(1)           ------>NtERF2                     <---------ERF1           --------->GLK1(1)             <---------RAP2.6(1)               <---------ORA47(2)      <---------LBD16                    <---------RRTF1(1)               <---------ANAC46    --------->ANAC46                    <---------RRTF1(3)                --------->DEAR3(1)    --------->ANAC58                    <---------RRTF1(2)                <---------RAP2.3(2)    --------->ANAC58<---------SPL7      <---------RAP2.3(3)               <---------RAP2.3(3)  <---------ALFIN1<------ZmHOX2a(2)     --------->ALFIN1                  <---------RRTF1(3) ----->ANAC58 <-------TEIL              <---------RAP2.6(2)               <---------DEAR3(1) ----->ANAC58--------->ARR14(1)         <---------DEAR3(1)               <---------ABI4(1) ->NtERF2  <---------GLK1(1)            <---------RAP2.3(2)             <---------ATERF1(1) --->DEAR3(1)--------->CCA1(2)         <---------ABI4(1)               <---------DEAR3(1) ----CDC5<------NtERF2         <---------ALFIN1<--------P              --------->ANAC46 ->LBD16--------->LBD16 --------->ICU4 --------->ATERF1(1)            <---------LBD16------->TEIL   - >DEAR3(1)----------->ARR10 ------>ZmHOX2a(2)<------NtERF2 ----------->RAV1(1) --------->ARR14(2) <--   agccacaagccggagatacgatcgtactgatcgccactcgaggcggcgcgtaggtcaagtacaacataagaccacggcggcgatatgcagctggaagggg  1623900                                                                                 --------->At4g35610-                                                                                 <---------At4g35610<                                                                          <---------RAP2.3(1)       -                                                                          ------>NtERF2 <---------SPL7                                                                         <---------RRTF1(3)         -                                                                         <---------RAP2.6(2)        <                                                                         <---------RAP2.3(3)        -                                                                         <---------DEAR3(1)        <-                                                                         <---------RAP2.3(2)  -------                                                                <---------ANAC58 <---------ZAT2 <----                                                           --------->ARR14(2) --------->DOF5.7(2)  --                                                           <---------ARR14(2)<-----------HVH21<------          ----------->GT1                                 <------ZmHOX2a(1)<------NtERF2----------->HVH21         <---------ZAT6                           <---------ANAC58      --------->RAP2.6(3) <--------         --------->ALFIN1                         <---------ANAC46     --------->MYB52(1) --------->SPL7       <---------ANAC58          --------->ALFIN1 <---------ANAC58    ----------->HVH21------>ZmHOX2a(2)       <---------ANAC46  <-------GAMYB<------NtERF2       ====================================HOX2a_HOX2a       <---------ANAC58  <---------At4g35610     <---------LBD16<---------ANAC58--------->MYB52(2)<-- -------->ALFIN1        <---------MYB46(3)  --------->ATHB12 --------->TOE1(2)<---------MYB52(1)<---- -------ANAC46---------->DOF2    <-----------RAV1(1)<------NtERF2     ----------->TGA1 ==============   gagtgtatggagtggtaaaaggaggtctgttgatggtgttggcgaatgaatggcggaagaggacatgcgagcatgacggcgttagctgatcggacggtag  1624000        <---------ZAT2        --------->At4g35610   <------NtERF2   ----------->RAV1(2)  <---------ATERF1(1)  ------>NtERF2  <------NtERF2                                                            --------->TOE1(2) --------->ATERF1(2)                                                      <---------LBD16 --------->RAP2.3(2)                                                      ------>ZmHOX2a(2) --------->DEAR3(1)                                                       ===============HOX2a_HOX2a <---------ATERF1(2)                                                      ===================HOX2a_HOX2a --------->RAP2.3(3)                                                     ================HOX2a_HOX2a -------->ORA47(2)                                                       ====================HOX2a_HOX2a ------NtERF2                                                            <------ZmHOX2a(2) -------->ATERF1(1)                                                     --------->ARR14(2) -------->DEAR4(2)                                                      <---------ARR14(2) ---------RAP2.6(2)                                               <------ZmHOX2a(1) -------->RAP2.3(1)                                               ==============HOX2a_HOX2a --------ATERF1(1)                  --------->WRKY12              ===============HOX2a_HOX2a -->ALFIN1            ------>ZmHOX2a(1)  --------->LBD16        <---------TOE2(3)                   < --MYB46(1)         ----------->RAV1(2)<---------LBD16      =============HOX2a_HOX2a               <- ---->NtERF2  --------->TOE2(1)     --------->WRKY38(1)     =================================HOX2a_HOX2a --P    --------->GLK1(1)    --------->ETT(2)               =============================HOX2a_HOX2a< -DEAR3(2)    --------->TOE1(1)     ----------->HVH21       <------ZmHOX2a(2)         <------ZmHOX2a(1) -------PCF5 ------>ZmHOX2a(1)<---------WRKY18(1)          <-----------ARR10--------->LBD16  -------- --MYB83<---------At4g35610  ----------->HVH21             --------->ARR14(2)     <------ZmHOX2a(1)<- ===================HOX2a_HOX2a    <-----------HVH21       <---------ARR14(2) <---------ANAC46    <--   gggccgcctgagctcctcgtactcctgaggctcgaccggtgaccggagacaagtcgaagccgatctaaggaatcgatccggcgaggaaggacgagaaacg  1624100                                             <---------MYB52(1)                                           <---------ANAC46                                          <------NtERF2                                          --------->ATERF1(1)                                          --------->DEAR4(2)                                          --------->RAP2.3(1)                                         <---------ATERF1(1)                                         <---------RAP2.3(1)                                         --------->ABI4(2)                                         ------>NtERF2                                        --------->DEAR3(1)                                       --------->ATERF1(1)                                       --------->RAP2.3(1)                                       <---------ABI4(2)              --------->ANAC58        <---------RAP2.3(1) -------GAMYB --------->ANAC58        ------->GAMYB --------DEAR3(2)                    --------->ANAC46 ------NtERF2--------->DAG2        --------->MYB52(1) ->MYB52(1) ---------->DOF2   <---------ARR11(3)                                          --------->ZAT2 --------MYB46(3)             --------->ARR11(3)<---------YAB1--------->ATHB12            <---------ZAT2 -------DEAR3(1)           >>>>>>>>>TBF1<---------DEAR3(1)   <---------YAB1    <---------YAB1   -----   gcggtagcagtgagaaaagcaagtgtgaagaagaacttaacggcgccgttttgattttctggcatgatagcttctgtgtttttgattatccgagctcgcc  1624200                                                                                                 ----                                                                                               ------                                                 ---------->DOF2                     <---------ANAC46                                                --------->AtMYB61                    <---------ANAC58                                         --------->AHL20(2)                     <---------ANAC58-----                                         <---------AHL20(2)                     <---------ANAC46-----                                   --------->ANAC55(2)                          --------->O2   <-----                                   <---------ANAC55(2)                          <---------ANAC55(2)                                   --------->ANAC58                     --------->GLK1(2)----------->HVH21       *TSS                        ----------->GT1                     *TSS     <---------ANAC58<----       ------------>CBF       <---------------AtSPL8              <---------ANAC46   <---------ANAC58 ---->DEAR3(1)     <---------ZAT14 --------->ANAC58              <---------LBD16--------->ANAC55(2)   gatgcgaacttcaatggagactggagagagagaagggacgtaattaaacaccaaagcgtttttatatttcggagaatcaactacgtgtcgtttgacatcc  1624300                                                                                        --------->AHL20(2)                                                                              --------->GLK1(1)                                                                           ==========================                                                                           ------->GAMYB<---------AHL20(2)                                                                          --------->ANAC58                                                                          <---------ANAC55(2)                                                                          --------->ANAC58                                                                      --------->DOF5.7(2)        <---                                                                  ------------>AtMYB77 --------->AHL20(2)          ----------->GT1                                         ===================================        <---------ARR14(2)                                       ----------->HVH21     <---------AHL20(2) -->ZmHOX2a(1)                                                   --------->DEAR3(1)    <---------AHL20(1) ----------->AG                                               --------->TOE1(2)        --------->AHL20(1) ---------->AGL15                                          <---------PCF5 --------->ANAC55(2)    <--- ---->TOE2(3)  ---------->DOF2                            <---------PCF2--------->MYB52(1)      <---- ------------AGL1                <---------ZAT14     --------->ALFIN1 --------->At5g28300 <---------YAB1 -----------AGL15      --------->ICU4    <---------YAB1--------->ALFIN1 <---------DOF5.7(2)     <----   taaattggcagatagtagaaaggaaatgttgagactggagagtttgatagtaacagtgtggggaccagcgacggtaacggaattcgaaatttattttagc  1624400           <---------ANAC46           <---------ANAC55(2)       =============================MYC_MYB       <-------GAMYB      ----------->GT1      <---------MYB46(3)   --------->ALFIN1        <-------PIF5  ------->MYC2             ------->PIF4  <-------MYC3             ------->MYC2  <-------MYC2             <-------MYC2  ------->MYC3             <-------MYC3 ==============MYC_MYB     ------->MYC3 <---------bZIP60(2)       <-------PIF4 <---------ANAC46          <-------MYC4 <---------O2              ------->MYC4 <---------ANAC58         --------->ANAC55(2) <---------TGA1a          --------->TGA1a <---------ANAC55(2)      <---------TGA1a --------->ANAC55(2)      <---------O2 <---------ANAC55(1)      --------->O2 --------->TGA1a          ============================================bZIP_DOF <---------ANAC58        ------------>OsbHLH66 --------->O2            ------->TEIL                                    --------->ANAC55(2)   <<<<<< ==========MYC_MYB      <------------OsbHLH66                        <-----------HVH21       ------>ZmHOX2a(1) --------HVH21         <---------ZAT14                         <-----------TGA1            <---------At4g35610 ==========MYC_MYB     --------->ZAT14                        <---------ANAC58             ---------- --------TGA1          <---------ZAT18                        <---------ANAC58    <-----------GT1   < -----ANAC58     --------->GLK1(2)                   ----------->HVH21   <---------ANAC55(2) -------- -----ANAC58 --------->YAB1------->PIF5    --------->ZAT18 <----------DOF2       <-----------GT1    <   gtcacgtgtggttacttataatctgtgcacgtgtcaaaataagagagggctactagtgacactttcgtcactgtcacttaattttagcctttctcctgac  1624500                                                             <------NtERF2                                                             --------->At4g35610                                                             --------->ATERF1(1)                                                            <---------ATERF1(1)                                                            ------>NtERF2                                                            <---------ERF1                                                            <---------RAP2.3(1)                                                           <---------DEAR3(1)                         <------ZmHOX2a(2)                 <---------RAP2.3(2) <GRF7           --------->ANAC58                          <---------RAP2.3(3) ->RAV1(2)  ------>ZmHOX2a(1)                              <---------RAP2.6(2) ---------ANAC58 --------->ANAC58                          <---------ANAC46                     ----- --->HVH21  ====================HOX2a_HOX2a      <---------At4g35610                         -------- ---------ANAC58 --------->ANAC46     <-----------GT1     --------->RAP2.6(3)              <---------   atgcttactctctcctctcccgctacgatcactgcgagttttcccttcttaagctctcatggcggcttcataaatctatatacagacaaatttacacata  1624600                                             --------->ANAC58                                             --------->ANAC46                                             --------->AtLEC2                                           <---------ALFIN1                                  <---------GLK1(2)                                 --------->At4g35610   --------->ANAC58              <---------At4g35610                         --------->LBD16   --------->ANAC58           <-------TEIL<---------REM1(2)                  ------>ZmHOX2a(1)  <---- ----->DOF2                 <---------GLK1(2)--------->ANAC58       <-----------GT1             <---- ->ANAC46--------->AHL20(2) --------->ARR14(2)                  <------------------------ANAC81 <---- ------AGL15                <---------ARR14(2)  ---------->DOF2<----------DOF2           <---------AHL20(2)   aagaaacgcattaaaaaaactatttactcagattcagcttcttctccacgcaaagactcgcttctctttttttctcttcctgagtttggattttttttgc  1624700  Previous    Next  AGI:  At5g05480.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G14920.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73340.1) Range:  from: 1622173    to: 1624271    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g05490.1    Description:  DIF1/SYN1. Identical to Sister chromatid cohesion 1 protein 1 (SYN1) [Arabidopsis Thaliana] (GB:Q9S7T7;GB:Q3E9L1;GB:Q9SQI1); similar to ATRAD21.3/SYN4 (ARABIDOPSIS HOMOLOG OF RAD21 3) [Arabidopsis thaliana] (TAIR:AT5G16270.1); similar to Os05g0580500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056426.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41418.1); contains InterPro domain Rad21/Rec8 like protein, C-terminal; (InterPro:IPR006909); contains InterPro domain Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910) Range:  from: 1624207    to: 1629235    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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