Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             ------>ZmHOX2a(1)                       --------->ARR11(3)                       <---------ARR11(3)          <---------At4g35610  ---------->DOF2     <---------LBD16        <---------ANAC58  --------->TOE1(2)     --------->MYB52(1)        <---------ANAC58 ------>ZmHOX2a(2)      <---------DOF5.7(2)   <---------MYB46(3) --------->YAB1          --------->DOF5.7(2)                              ------  <--------P          -------->HAHB4      ---------->DOF2                                      ------ ----->DAG2          --------->ICU4    <---------HSFB2a(2)                     <---------At4g35610 ----->DOF2        --------->YAB1      --------->HSFB2a(2) ---------->DOF2     --------->At4g35610<--   aagggttgatgcttctgctagtaatgatcctaagaaagcgtcgagaaagttaacggggaaacaaagacaaactattcaaactgctgaagatgaagaagtg  1615100                                                                                    --------->AHL20(2)                                              <---------TOE2(3)                  --------->ATHB12                             ---------->DOF2 ---------->DOF2 ---------->DOF2    --------->ICU4   ------>ZmHOX2a(2)    ---------->DOF2     --------->AHL20(2)                  <---------YAB1 --->ALFIN1           <---------YAB1        <---------AHL20(2)   <-----------------------TaNAC69(2) ----->HVH21        --------->YAB1   ----------->GT1       <---------YAB1    --------->ICU4<---------At4g35610 -------WOX13(1)   <---------YAB1---------->DOF2        ------->TEIL     <------ZmHOX2a(1)<---------YAB1   atggatcgagattataagttgatgataaaagtaaagaaagggttaattaaagaagatgaatatgaaagacttacaggagatgatgatttattctgatgag  1615200                                                                            <---------AHL20(2)                                                                           <---------AHL20(2)                                                                           --------->AHL20(2)                                                                    ----------->GT1         <--------                                                        --------->YAB1     <---------AHL20(1)               <---------ZAT2                        <---------CCA1(2)<---------MYB52(1)    <--------        XXXXXXXXXXXXXXXXXXXX>MIR2111A/B            --------->YAB1--------->GLK1(2)          <--------   aagaaacaaaacctgcatgctgagattggactaagcttagtgtctttctactctcatatcatatgtgattctgttaatttttttttttttttttgggtga  1615300                                                                                            ---------                                                                                            <--------                                                                               --------->AHL20(2)                                                                               <---------AHL20(1)                                                                               --------->AHL20(1)                                                                              <---------AHL20(2)                             <---------ANAC58                     --------->AHL20(2)       <---------CCA1(2)                             <---------ANAC58                     <---------AHL20(2)      <---------AHL20(1)                        <---------DAG2                            --------->AHL20(1)      <---------ARR11(3)   <---------YAB1       ------>ZmHOX2a(1)                         <---------AHL20(1) <---------YAB1 <---------AHL20(2)     <----------DOF2                          <---------------AGL15    --------->ARR11(3) -ANAC58             ---------->ID1              --------->AHL20(2)           --------->AHL20(2) -ANAC46   ====================HOX2a_HOX2a    <---------DAG2     --------->AHL20(2)----------->GT1 -ANAC58   <------ZmHOX2a(2)---------->ID1    <----------DOF2 ------>ZmHOX2a(1)<---------AHL20(2)   gaattaatatcggatcatgttatgtcctttttcgttctacgagtctcacttttatatatgtttcctaataaatttagcaaataaattgtgaatatatcta  1615400                                        <-------MYC2                                        <-------MYC3                                        ------->PIF5                                        ------->MYC3                                        <-------PIF5                                        ------->PIF4                                        <-------PIF4                               --------->ANAC58                           --------->MYB46(3)                               --------->ANAC58                         <---------DOF5.7(2)                            --------->ZAT18                             --------->MYB52(1)                          --------->ZAT18                          --------->AHL20(2)                    <------ZmHOX2a(1)   <-------MYC4               <---------AHL20(2)              <---------YAB1<---------ZAT18                        <---------AHL20(1)            ===============HOX2a_HOX2a  ------->MYC2               --------->AHL20(1)            ------>ZmHOX2a(2)  --------->ANAC46                 --------->YAB1              <--------     --------->ARR14(2)   <---------ZAT18                      <---------YAB1               <--------     <---------ARR14(2)  --------->ALFIN1                      --------->ICU4       --------->AtMYB61 >ARR11(3)<---------ARR11(3)--------->ZAT14                  --------->YAB1      --------->YAB1 -ARR11(3)--------->ARR11(3)<---------ZAT14            --------->ANAC46 <-----------GT1--------->ZAT6   tagagcaaattcgatcttcataggagagtgtgcacgcttgcacatgctagtaaatgccctccataataataaattaacgactatcaccatcactaaggta  1615500                                                                   <---------ANAC58                                                                   <---------ANAC58                                                                --------->WRKY38(1)                                                                --------->WRKY12                    -                                                                --------->WRKY45                   --                              *TSS                             <---------MYB52(1)                 ---                           --------->ARR11(3)                  --------->DOF5.7(2)    <---------ARR14(2)                           <---------ARR11(3)                 <-------GAMYB           --------->GLK1(2)        ----------->RAV1(1)--------->GLK1(2)                  <---------At4g35610     --------->ARR14(2) -TOE2(3)       --------->AHL20(2)     --------->YAB1        <---------ANAC46        --------->GLK1(1) -TOE1(3)     --------->YAB1--------->RVE1(1)          <----------DOF2               <---------GLK1(1)   tttcatgacacaacaaaaataaaaacaaaaatctctctgtatcatcgtcttcttcgtcttttgccgttgacttgtttgaattttcgcaaatccgtctcta  1615600                              --------->At4g35610                              <---------ZAT2                              --------->ZAT2                              <---------At4g35610                            --------->MYB46(3)                         --------->AtMYB61            --------->DEAR3(2)                         <---------ALFIN1             ------>ZmHOX2a(2)                         --------->DEAR3(1)          <------ZmHOX2a(2)                        --------->MYB46(3)          --------->ARR14(2)              <-----------HVH21                     <---------ARR14(2)             --------->bZIP60(1)               <----------DOF2             ------>MYB46(1)             --------->TGA1a<---------ALFIN1  <---------DAG2 --------->ANAC58             <---------bZIP60(1)           <---------ALFIN1  --------->ANAC58             =============================================bZIP_DOF <---------ETT(2)      --------->YAB1 -------->MYB52(1)      <------NtERF2    ------>ZmHOX2a(1)   --------->ANAC46   <----------DOF2 ------->TOE1(2)       ------>NtERF2     ===================HOX2a_HOX2a------>NtERF2  --------->WOX13(1) ------>MYB46(3)  --------->At4g35610    ====================HOX2a_HOX2a   ------>MYB83 <---------ATHB12   tccaacgaagaagtcatgtcagtggcaccaccagctccaagtcctccacctttcgatccgactaagccatcgacaccaatctctttcccaatcaaaactc  1615700                                                                                             <-------                                                                                             --------                                                                                           <---------DEAR3(2)                                                                                          --------->ETT(1)                                                                                         <-----------                                                             --------->SPL7          <-------GAMYB                                                             ------->TEIL            <----------DOF2                                                           --------->LBD16          <------NtERF2                                                         --------------->AtSPL8    ------>NtERF2                                                        ------>ZmHOX2a(1)         <---------ANAC58                                                <---------At5g28300               <---------ANAC58                                            <----------DOF2<---------SPL7         <---------ANAC46                                      <---------ICU4<---------MYB52(1)      <---------HSFB2a(1)------                                   --------->YAB1   --------->ARR14(2)    <<<<<<<<<<<<<<<<<LFY<------ZmHOX2a(2)                                <----------DOF2<-----------GT1       <-----------HVH21  <-----------HVH21   ttcaagacttgaagtctcgctcttacttcgattcctttcattatccctttaaccgttcctccgtacctctccgtcggaacattggcgcgttgtcggatcg  1615800                                                                                               <-----                                                                                      <---------ZAT2                                                                                      ----------->RAV1(2)                                                                                 --------->ANAC46                                                                                 --------->ANAC58                                                                                 --------->ANAC55(2)                                                                                 <---------bZIP60(1)                                                   <------MYB46(1)               <---------ANAC55(2)                                                  <---------MYB46(3)             --------->bZIP60(1)                                                  <---------------AtSPL8      --------->ARR14(2)                                             <---------YAB1                   <---------ARR14(2) --ARR14(2)                                --------->YAB1                   <---------MYB46(3) <----- ->ARR14(2)                     --------->ATERF1(1)<------MYB83            <---------TOE2(2) <------- ----------WRI1          ---------->DOF2  <---------YAB1        ----------->GT1  --------->ANAC58 >ZmHOX2a(2)      ----------->HVH21 <---------ANAC46  <-------TEIL  ----------------------->TaNAC69(2)   acctaggctcttggtttgtcatgacatgaaaggaggctacgtcgatgataagtgggtacaaggatgtggaaacaacgctggttacgccatctgggattgg  1615900                                                                                       ---------->DOF2                                                                     --------->At4g35610                                                                     --------->ZAT14 <------NtERF2                                                                 <---------ALFIN1  <---------ANAC58                                                                -------->P         <---------ANAC46                                                                ------>MYB46(1)    <----------ID1                                                               ----------->RAV1(1) <---------bZIP60(1)    <---------WOX13(1)                                        --------->AtMYB61    <---------ANAC58 -MYB83------->TEIL                               ------>ZmHOX2a(1)  <---------At4g35610 -MYB46(1)      --------->DOF5.7(2)              <---------ALFIN1--------->ZAT6    --------->bZIP60(1) --WOX13(1)   <---------ANAC46                 ------>ZmHOX2a(1)------>MYB83  <---------O2   tatttgatggacgttttcgtttacttctctcactctctagtgactcttcctcctccttgttggaccaacactgctcacagacatggcgtcaaagtaagtc  1616000  Previous    Next  AGI:  At5g05450.1    Description:  DEAD/DEAH box helicase, putative (RH18). Identical to DEAD-box ATP-dependent RNA helicase 18 (RH18) [Arabidopsis Thaliana] (GB:Q9FLB0;GB:Q9ZS03); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT1G71370.1); similar to hypothetical protein OsI_000508 [Oryza sativa (indica cultivar-group)] (GB:EAY72661.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ75262.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41433.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IP Range:  from: 1612007    to: 1615357    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g05460.1    Description:  hydrolase, acting on glycosyl bonds. similar to glycosyl hydrolase family 85 protein [Arabidopsis thaliana] (TAIR:AT3G11040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41431.1); contains InterPro domain Glycoside hydrolase, family 85 (InterPro:IPR005201) Range:  from: 1615530    to: 1618903    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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