Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  --------->AHL20(2)                                                                                <---------AHL20(1)                                           <------MYB83  <---------DAG2         <---------AHL20(2)                                           ----------->GT1            --------->HSFB2a(2)    --------                                          --------->MYB59<----------DOF2        --------->AHL20(1)                             <---------DAG2<------MYB46(1)         <----------DOF2    <---------TOE2(3)           --------->YAB1    <----------DOF2           ------>ZmHOX2a(1)       --------->AHL20(2)   <----------DOF2        <-----------GT1 --------->MYB46(2)   <----------DOF2 <---------AHL20(2) ---   aaattctttatatttataatctattgtatcactttattttgtgtttggtaaaacatcctctttttctttcttttcgaacaaataaattgagataaacata  1611600                                                               <---------AHL20(2)                                                               --------->AHL20(2)                                                           -------->HAHB4                              ----------->RAV1(1)          --------->ATHB12                  --------->YAB1                           ----------->GT1            --------->ZAT6   <---------ALFIN1             <---------ATHB12 <-----------GT1 <---------YAB1                           --------->ICU4       --------->ICU4   ----- ->YAB1     --------->YAB1  --------->MYB46(3)      --------->ANAC46      ----------->GT1 --------->YAB1 ------------>AtSPL8    <-----------HVH21      --------->ARR14(2)       ---------->DOF2  <---------YAB1   tttgtactattctatcactatcatcgtgtcaccaccatattcaaatccatatatacacaaatgattaaaattttaaaagtaatttttgtttataatacac  1611700                    --------->YAB1                    <---------ANAC58                    <---------ANAC58                   --------------->AtSPL3           --------->TOE2(3)          --------->ANAC55(1)          --------->ANAC58          --------->ANAC58          <---------ANAC55(2)          --------->ANAC55(2)         <-----------------------TaNAC69(2)                <----------DOF2         <-------TEIL<---------SPL7                        ------>ZmHOX2a(1)        --------->CCA1(2)                              <-----------GT1        --------->ARR14(1)                            <-----------GT1               <---------ARR11(3)       --------->ARR14(2)                            <---------AHL20(2)             --------->ARR11(3)       <---------ARR14(2)   <---------ARR11(3)----------->HVH21               --------->ZAT14       --------->ARR11(1)<---------ALFIN1   <---------ANAC58                  <---------ZAT14     ----------->ARR10 --------->SPL7       <---------ANAC58 <-----------RAV1(1)  ----------->ARR10 ---->ANAC46       --------------->AtSPL8 <---------YAB1  --------->TOE2(3)   <---------At4g35610   aaaaatgaagatacgtaaactatcgtaccacatcttacaaaattattcgtgacattttatcctttgttgtcccaaattagtgctgagatacttcaaatgt  1611800                       <---------YAB1                     --------->YAB1                     <---------AHL20(2)                  <---------ICU4                 --------->ICU4 --------->ATERF1(1)               --------->AHL20(2) ------>NtERF2                        <-----------GT1               --------->YAB1 <---------ANAC58                  <------NtERF2            --------->YAB1    <---------ANAC58                  <---------RAP2.6(3)          --------->At5g28300 <---------ANAC46                 --------->RAP2.6(2)--------->YAB1    <         ----------->GT1      <---------bZIP60(2)           <----------ID1     <----------DOF2  <----      --------->MYB52(1)   --------->ALFIN1   --------->At4g35610    --------->AHL20(2)    ----------   ctgattaagaacggtaataatatttataagtggcgaggcccaagaattagctcaaaacaaatgggccgaaattatacatttctttcatattagtaaagct  1611900             --------->LBD16            <---------LBD16         --------->ARR14(2)                                                   <---------MYB59         <---------ARR14(2)                                                ------>MYB83        <---------GLK1(1)                                      ----------->RAV1(1) --------->HSFB2a(2)    <---------MYB46(3)                --------->GLK1(1)------>MYB46(1)        <-- <---------HSFB2a(2) <------------CBF                ----------->GT1       --------->MYB52(1)    <--- ---------LBD16   ------------>CBF<-------TEIL     <---------ANAC58      <---------MYB59         <--- ------DOF2<---------LBD16        --------->ZAT14  <---------ANAC58   <-----------GT1           ----- >DOF2  --------->GLK1(1)   --------->MYB52(1)     <-------GAMYB --------->YAB1  <------------CBF<---   tttctgggagaaatccgggcatcaattggttaccggttcagtatttaagcctgggttgtgaattccaacataataccgaaccgaattgatcaaaacgctg  1612000                                                                        <---------MYB52(1)                                                                        <------NtERF2                                                                       <-----------HVH21                                                                       <---------RAP2.6(3)                                                                      --------->RAP2.6(2)                                                                     --------->SPL7                                                                    --------->ATERF1(1)                                                                    <---------ATERF1(1)                                                                    <---------DREB2C(1)                                                                    --------->DREB2C(1)                                                                    <------NtERF2                                                                    ------>NtERF2                                                                   <---------ATERF1(1)                                                                   <---------RAP2.3(1)                                                                   <---------SPL7                                                                   ------>NtERF2                                                                  --------->DEAR3(1)                                                                  --------->ATERF1(1)                                                                  <---------ATERF1(2)                                                                  <---------RAP2.3(2)                                                                  --------->ATERF1(2)                                                                  <---------DEAR3(1)                                                                  <---------RAP2.6(2)                                                                 <---------DREB2C(1)                                                                 <------NtERF2                                                                 --------->DREB2C(1)                                                                 --------->ATERF1(1)                                                                 --------->At4g35610                                                                <---------DEAR4(2)                                                                <---------ATERF1(1)                                                                <---------RAP2.3(1)                                                               <---------RAP2.3(2)                                                               <---------DEAR3(1)            <---------ICU4                                     --------->DEAR3(1)       *TSS --------->ATHB12                                  <---------At4g35610 --------DOF2                                                 --------->ATERF1(1) ------ANAC46                                                 --------->At4g35610 ------ANAC58                       --------->DAG2            <---------ZAT2        <---------DEAR3(1) ->NtERF2  <---------ATHB12        ---------->DOF2           <---------ATERF1(1)   <---------At4g35610 ------ANAC58                  ----------->GT1 --------->ZAT18<------NtERF2     <-------TEIL      ---   cgttttgttttcagtcattgcaaggttactgcaaggttaaagcgggaagtgagcaacgagaggcagcggcggccgtcatggattcatcggcgaacataaa  1612100                                  --------->MYB46(3)                                            -----                   --------->ARR14(2)                <---------YAB1                           <------                   <---------ARR14(2)              --------->GLK1(1)                      <---------ALFIN1           --------->ARR14(2)    ------->TEIL      <---------GLK1(1)                     --------->ZAT14           <---------ARR14(2) --------->TOE1(1)   <---------ARR11(3)                     <---------ZAT18         ------->GAMYB   ------>NtERF2            --------->ARR11(3)                     <---------ZAT14      --------->MYB52(1)--------->DEAR3(1)    --------->LBD16        <---------ATHB12    --------->ZAT18     ----------->HVH21  ----------->HVH21   <---------LBD16<---------TOE2(3)         --------->ARR14(2) ------->DOF2     <---------CCA1(2)   <---------ALFIN1--------->ATHB12               <---------ARR14(2)   caaagctctaacggagacgcgtttctccgacctcgaacctccactctccggagatatcattgaggctcttaatcagtctgatttcgagttctgcactccg  1612200                                                      ------>NtERF2                                                   <---------ATERF1(1)                                                   --------->At4g35610                                                   <---------At4g35610                                                  <---------DEAR3(1)                                                  --------->ANAC46                                               <---------ETT(2)                 <----------DOF2               <---------DEAR3(1)             <------ZmHOX2a(2)                 --------->ETT(2)        ------>NtERF2                          --------->DEAR3(1)       ----------->HVH21                       ----------->HVH21               <---------ANAC58      --------->LBD16                          --------->WRKY12   --------->LBD16      ------>NtERF2                           <------NtERF2      --------->HSFC1(1)     --------->RAP2.6(2)                      --------->ATERF1(1)--------->HSFB2a(2)  --------->ANAC46         ----------->GT1   <-----------HVH21   <---------HSFB2a(2)  --------->ANAC58       <---------ZAT14     ------>NtERF2       <---------HSFC1(1)    <---------SPL7  --------->ANAC58       --------->ZAT14    <---------ANAC46    <---------LBD16<---------ANAC58 ---->LBD16 <---------ARR14(2)        <-----------RAV1(1)     --------->ARR14(2)     ---------->ID1 ---LBD16   --------->ARR14(2)       --------->ARR11(3)       <---------ARR14(2)<----------DOF2   gttcaagccgcgacgatccctttactctgtagttacaaggatgttgccgtcgacgctgccactggttctggaaaaaccctagctttcgtcgttcccctcg  1612300                <---------ALFIN1               --------->MYB46(3)              <------ZmHOX2a(2)             --------->ARR14(2)             <---------ARR14(2)                      <---------WOX13(1)     <------ZmHOX2a(1)         <-----------HVH21                         <---------ICU4 <---------HSFB2a(2)         --------->LBD16                          <---------YAB1  --------->HSFB2a(2)      ------>ZmHOX2a(1)                          <---------ARR11(3)     --------->ICU4             <-      ===============HOX2a_HOX2a             <--------P          <---------LBD16                -----  --------->ARR14(2)           --------->LBD16   --------->ARR11(3)----------->GT1              <---- --------->GLK1(1)--------->ANAC46 ----------------->AGL1      --------->GLK1(2)              <------ <---------GLK1(1)--------->bZIP60(2)    <-----------RAV1(2)<---------MYB52(2)         <---------YAB1   tagaaatcctccgtcgatccacctcattccctccgaagcctcaccaggtaagataattgccaactaatctggaaattaggatttttgtttcgattgtgag  1612400            <---------AHL20(2)                                            <-----------RAV1(1)            --------->AHL20(1)                                         <---------AHL20(2)            --------->AHL20(2)                                     --------->CCA1(2)           <---------AHL20(2)                                     <---------ARR14(2) <---------YAB1       --------->WRKY18(1)                         --------->ARR11(3) --------CCA1(2)     <-----------HVH21      ------>NtERF2         --------->ARR14(2) ---->At4g35610     --------->ANAC46       --------->DEAR3(1)     <---------ARR11(3)              <-- -----At4g35610 <-----------GT1    --------->AHL20(2)         ------->GAMYB                  <------- ---ZAT18  --------->AHL20(2)     <---------YAB1             --------->ANAC46    --------->MYB46(3)   cttatctttgaaattaaattacaggtcatgggggtgattatatcgccaacgagagagctatcaacgcagatatataatgtcgcacaaccatttgtttcga  1612500  Previous    Next  AGI:  At5g05450.1    Description:  DEAD/DEAH box helicase, putative (RH18). Identical to DEAD-box ATP-dependent RNA helicase 18 (RH18) [Arabidopsis Thaliana] (GB:Q9FLB0;GB:Q9ZS03); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT1G71370.1); similar to hypothetical protein OsI_000508 [Oryza sativa (indica cultivar-group)] (GB:EAY72661.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ75262.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41433.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IP Range:  from: 1612007    to: 1615357    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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