Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->GLK1(1)                                                                             <---------ARR14(2)                            --------->AtLEC2              <---------GLK1(2)  --------->ARR14(2)                       --------->ARR14(2)           ----------->HVH21       <------ZmHOX2a(1)                  <---------ANAC46                 <---------ANAC46      <---------HSFB2a(2)                 <-------MYC3                     --------->At4g35610    >>>>>>>ZML2        --------->YAB1 <---------ARR14(2)     <---------REM1(1)    <---------TOE2(3)       <---------YAB1  ------->TEIL           <---------MYB46(3)   <---------TOE1(3)      <---------At4g35610     --------->YAB1   <---------CCA1(2)       <-----------RAV1(1)------>ZmHOX2a(1)        --------->At4g35610 -------RAP2.6(2)------->MYC3    <---------STY1(2)<---------At4g35610    --------->HSFB2a(2)   gcggctagtatgatcaccatgtgtgtatccatgctagctatattcttgttgttgctgacagagtctcctaaggttctaggatttgcatcagtagctgaaa  1566000              <-----------HVH21             <---------ANAC46             <---------ANAC58                                     <---------ARR14(2)             <---------ANAC58                                     <-----------ARR10         <---------ANAC46                                         --------->ARR11(3)         <---------ANAC58  <---------ARR11(3)                     <---------ARR11(3)         <---------ANAC58  --------->ARR11(3)                     --------->ARR14(2)        <---------At4g35610<-----------ARR10     <---------HSFB2a(2)        --------->At4g35610--------->GLK1(2)     --------->HSFB2a(2)                          <------      <--------P    --------->ANAC58       <---------TOE2(3)<-------TEIL<----------DOF2       <------   <------NtERF2    ----------->GT1       <---------DOF5.7(2)    <---------CCA1(2)<-----------GT1 <-- <---------LBD16    --------->ANAC58--------->At4g35610  --------->At4g35610     <-----------GT1 ----   tagtcggggtagcttgcgtcgcaagtaaaaatctagccatctgtaaacgtttcagaaacagatgcacaaatcttcttttttttttaactcaccttcaagg  1566100         <----------DOF2    <<<<<<<<<TBF1                                ---------->DOF2 <<<<<<<<<TBF1                                 --------->ANAC46 ---TOE2(3)                           --------->ARR14(2)    --------->At4g35610              -------- ---TOE1(3)                 --------->GLK1(2)  --------->ANAC58                              -------- -----TEIL                 <---------GLK1(2)   --------->ANAC58 ---------->DOF2          --------->YAB1 ----->ARR14(2)<---------YAB1         <---------ARR14(2)    <---------At4g35610         <---------YAB1   ttcttcttcttctttttcttattgctccagtttctgttcgaatcggactacgaaagagactgagatgaaagagtcaagtttcttcatgctatgataagca  1566200                                                                                                <----                                                                                                -----      <----------DOF2                                                                           =====     <---------ANAC58                                                                          ------     <---------ANAC58                                                     ----------->GT1   --------- ->ANAC58                  --------->LBD16                  ----------->GT1        ---------->DOF2  < ->ANAC58         <----------DOF2    <-----------GT1 ---------->DOF2   --------->AtLEC2     <--------   caagagtgcttttgttctctcttttactccgaggcttagtttccagtctgaaactcaaagacttgataaatccatggagaaaaatcaaagctcaaatcct  1566300    ------>ZmHOX2a(2)  <---------ARR11(3)  --------->ARR11(3) ------DOF2 ->ZmHOX2a(1)                         <---------------AGL15 ==========HOX2a_HOX2a               <-----------------AG --->TOE2(3)         <---------ARR11(3)       <------ZmHOX2a(1) >ARR14(2)           --------->ARR11(3) --------->ANAC46               <------ZmHOX2a(1) ---------YAB1 <-----------GT1       <-----------------AGL1          ----------->GT1 -ARR14(2) <----------DOF2 <----------DOF2   ----------->GT1   --------->YAB1                --------   ttatgatctgtttctttatacaagttcttctttgggttttacacataaggaaataagttgtactataagagtaggaaataggctagtaatagagagaaag  1566400                              --------->ARR11(3)                              <---------ARR11(3)                           <---------ATHB12                    <---------DEAR3(2)                    <------MYB83                    <------MYB46(1)                   <---------DEAR3(1)                  --------->AHL20(2)                   --------->MYB59                     <---------AHL20(2)                   <---------MYB46(3)     <---------GLK1(2)                  <---------ORA47(1)      --------->ARR14(2)       <---------YAB1      --------->AHL20(2)    <-------GAMYB                                 ------     --------->CCA1(2) ------------>CBF ----------->ARR10                                <---------ANAC46 -->DOF2       <---------AtMYB61    <---------MYB46(3) ----------->TBP     ----------->GT1   <-------   agggatgatatgatgagatggtcggtccaataaatctttggttagatttgctgttatataaattcgataatttgagagagaaaatactatggcatataat  1566500                                                                          <---------AHL20(2)                                                                          --------->ARR11(3)                                                                          <---------ARR11(3)                                                                          <---------AHL20(1)                                                                          --------->AHL20(1)                                       <----------ID1           <---------ICU4                      <                                    ---------->DOF2             -------->HAHB4                <------                                    --------->MYB52(1)         <---------ATHB51              --------                                 --------->ANAC58              <---------ATHB12         <---------ARR11(3)        ----------->GT1          --------->ANAC58              --------->ICU4           --------->ARR11(3) --->ARR11(3)             <----------ID1<------ZmHOX2a(1)    --------->YAB1           ----------->ARR10 --AHL20(2) <---------AHL20(2) --------->MYB52(1)  ---------->DOF2        --------->AHL20(2) <-------   cttgttggatttgtataatttagtaacagggacaaacgtaaaggacaaggccaaaaagacaactaataatgcagaatatattggtgagtagatattaaaa  1566600                                                                                         <---------AHL20(2)                                                                                         <---------ICU4                                                                                         -------->ATHB1                                                                                         -------->HAHB4                                                                                         --------->ATHB51                                                             <<<<<<<<<<GATA-1            --------->ATHB12                                                            <---------GLK1(1)           <---------ATHB51                                                            --------->GLK1(1)           --------->ICU4                                                  --------->ANAC58                   <---------AHL20(2)      <-----------GT1                <---------GLK1(2) --------->At4g35610           --------->AHL20(1) ---------TOE2(3)       <---------ZAT18           --------->ANAC46                   --------->AHL20(2) ---YAB1   <---------GLK1(2)         <---------ICU4    <---------At4g35610          --------->AHL20(2) ->AHL20(2)--------->ARR14(2)      <---------TOE2(3) <-----------RAV1(2)     ---------->DOF2 --AHL20(2)<---------ARR14(2)--------->ICU4       --------->ANAC58    <---------ANAC46  <---------YAB1   ttgatgtataacgaattctcaattagtggtcttaattaagaatttcggtttcaagccagatgaaatccactctcgtatagaaagaaattaattattgaga  1566700                                                                     --------->TOE2(3)                                                                   --------->GLK1(2)                                                                  <---------ARR14(2)                                                                  <---------GLK1(2)             ---------->DOF2                                      --------->ARR14(2)            <---------AHL20(2)                              --------->GLK1(1)          <---------YAB1            --------->AHL20(2)                            <---------ANAC58           <------ZmHOX2a(1)         --------->YAB1                                   <---------ANAC58     --------->YAB1       <---------YAB1           <---------AHL20(2)  <-----------RAV1(1)        <---------ICU4--------  ----------->GT1           <---------ICU4     <-------TEIL <---------GLK1(1) <---------ATHB12   aaacgagttattaataaaagaaacatttgatcatttttttgtataaacatacatatgttggggtatcagattcttaacaaatcatgaggattatagcata  1566800                                                                                                 <---                                                                                                <----                                        <-----------HVH21                         <---------AHL20(2)                                --------->ZAT14              <---------TOE1(3)    --------->AHL20(1)    <---------MYB46(3)        <---------YAB1                 <---------TOE2(3)    <---------AHL20(1) ------->TEIL               <-----------GT1     <---------AHL20(2)                --------->AHL20(2) ->YAB1                    --------->AHL20(2)--------->TOE2(3)              ----------->GT1     -----   atgcatttgttccaccattaatctactaatttactatagtcgggtcacattaaaacgtagtttaatgttaccgaaaatgtgtaaaatattagttggattt  1566900  Previous    Next  AGI:  At5g05280.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to Putative RING-H2 finger protein ATL5B precursor (ATL5B) [Arabidopsis Thaliana] (GB:Q9FLC6); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G10910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48869.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 1565448    to: 1566392    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g05282.1    Description:  CPuORF64 (Conserved peptide upstream open reading frame 64) Range:  from: 1565448    to: 1566392    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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