Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     --------->RVE1(1)                   --------->CCA1(1)                     <------------MYB.PH3(2)               <---------AHL20(2)                        <---------MYB52(2)               --------->AHL20(2)                        <---------MYB59   ----------->RAV1(1)                             --------->LBD16                       <-----------GT1 <---------At4g35610<---------ARR11(3)            <---------ANAC46                   <----------DOF2 --------->At4g35610--------->ARR11(3)      ---------->DOF2--------->MYB52(1)     <---------AHL20(2) --DOF2    <------ZmHOX2a(1)           <---------YAB1  <-----------GT1            <-----------GT1   atcagcagcattaggaaataaatatctcttcttcagagcttctcattaaagtccgtataactaactaaacactcttagtagaatttacttttgacatttt  1519500                                                                                               <-----                                                                                              -------                                                                                         --------->ALFIN1                                                                                        <-------MYC3                                                                     <------NtERF2      ------->MYC3                                                                   <---------bZIP60(1)  <-------MYC2           --------->ARR11(3)                                      --------->bZIP60(1)  ------->MYC2           <---------ARR11(3)                                      <---------ANAC46   ------->TEIL       ---------->DOF2                                 --------->ANAC55(2)         --------->ANAC58  --------->TOE2(3)                       <---------WRKY18(1)   <-----------RAV1(1)--------->ANAC58 ----------->GT1                 ---------->DOF2       <---------ANAC55(2) <---------------AtSPL8   -   ccaacgtaaaaaagatttatgacccaaaaaaaaaaaaaagagtttgaccttgtaatcacttaacttgtgtcgtcgttcaagtacaacgcatgtgtgagga  1519600                             --------->YAB1                            <---------YAB1                          -------->HAHB4                          <---------ICU4                          --------->YAB1                                                            -                         --------->ICU4                                                            --                       <---------ICU4                                                              <-                       --------->YAB1                                ---------->DOF2            <----                      <---------YAB1                         ---------->DOF2                    -----                      --------->ICU4                     ---------->DOF2    --------->GLK1(2)--------    --------->YAB1  --------->YAB1                  --------->At4g35610----------->GT1     --------->AHL20(2) -ZmHOX2a(1)       <---------YAB1--------->ANAC58   ----------->GT1<---------RAP2.6(3)    --------->YAB1 ---->GT1        --------->YAB1  --------->ANAC58<------ZmHOX2a(2)----------->GT1        --------->AHL20(2) --------->DOF2 <---------YAB1 ---------->DOF2  <-----------HVH21 --------->RAP2.6(2)--------->AHL20(2)   aaaaaagaataatgtgtttttataataataatgaaaagccaaaacagaccgatcaggtcaaaagaaagccgtaaagaaaatccaacttaaaataaaaata  1519700                                                               <-----------GT1                  --------->CCA1(2)                <---------AHL20(2)            ------>MYB46(1)                        --------->AHL20(2)            ------>MYB83                           <---------AHL20(1)                      <---------ANAC46            --------->MYB52(1)                    <---------AHL20(2)                       <---------ANAC58          <---------MYB59                         --------->AHL20(2)                       <---------ANAC58          <---------MYB46(2)                   --------->AHL20(2)                    <---------TOE2(3)    <----------DOF2                           --------->AHL20(2)                 --------->YAB1 -------->RVE1(1) --------->GLK1(1)           <---------AHL20(2)    <----------DOF2---------->DOF2 ------->ARR11(3)<---------ARR14(2)       <------ZmHOX2a(1) --------->ATHB51     <---------AHL20(2) --------ARR11(3)<---------ARR11(3)    --------->At4g35610  <---------ICU4       --------->AHL20(2) -----AHL20(2)   --------->ARR11(3)  --------->YAB1--------->AHL20(1)        --------->AHL20(2) ---->AHL20(2)   --------->ARR14(2) <---------ATHB12       <---------YAB1    <---------AHL20(2) ->YAB1<-----------GT1            --------->WOX13(1)       --------->ICU4   --------->AHL20(2)   aaatctcttttaccaaacagatatacagagagacttcaatcagaggaaataaataaatttcattatttctctttctgaattaataaaaaggtttcttgtt  1519800                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 ====                                                                                                 <---                                                                                                <----                                                         --------->MYB46(3)                     <----                     <---------TOE1(3)              --------->ANAC58                       <---------                     <---------TOE2(3)              <---------ANAC55(2)                   <----------           <---------At4g35610                      --------->ANAC58               --------->ARR14(2)           --------->At4g35610                      --------->ANAC46            <XXXXXXXXXXXXXXXXXXXX   gaattgaatttgtagctgtgtttaacgtagtagcacttgggttttagatagacaacgtaaccaaaactgtttcatgttctgtctgtattctctcttttgc  1519900                                                                                                   --                                                                                               <-----                                                                         <---------ANAC46     -------                                                            ------>ZmHOX2a(1)                 -------       <---------ARR14(2)                               <---------ARR14(2)           <---------ANAC58       --------->ARR14(2)            <---------ZAT18    <---------ARR11(3)<---------HSFB2a(2)<-------      --------->GLK1(1)              <-------TEIL       --------->ARR11(3)--------->HSFB2a(2)-------- ------DAG2                          --------->ABI4(2)  --------->GLK1(2)--------->HSFB2a(2) -------- ----------->AGL15                <---------ANAC46      --------->ARR14(2)--------->LBD16    <------- ------------AGL15           --------->At4g35610      ---------->TaMYB80 <---------HSFB2a(2)--------- ==================================================================================================== -------DOF2     <----------DOF2 <---------DEAR3(1)--------->LBD16       <---------LBD16 ------------ -----ANAC58  *TSS           <---------At4g35610  --------->HSFB2a(2)   <---------LBD16  <----------- -----ANAC58  ------>ZmHOX2a(1) <---------LBD16   <---------HSFB2a(2)<----------DOF2 <---------ANAC58 -DOF2<---------GLK1(1)   <----------DOF2        <---------LBD16     <---------GLK1(1)   <----------- --------------ANAC81    <---------ICU4   <---------AHL20(2)<----------DOF2  ---------->DOF2<-------- XMIR2936  ------>ZmHOX2a(1)<-----------RAV1(1) <---------LBD16      --------->GLK1(1)  <-----------HVH21   ttttttgggtttcctccttctttctcatctttgctgcggtgcatttttttctcgggaaaatcctttctgggctttccgggaaagttttcttgtcagattc  1520000 <---------------AtSPL3 <---------------AtSPL8 --------------->AtSPL8 --------------->AtSPL3 --------->DAG2 -------->DOF2 --TEIL                          -------->P -->GLK1(2)              --------->YAB1 -->ARR14(1)         <---------AHL20(2) --ARR14(2)          --------->AHL20(2)   <---------GLK1(2) ->ARR14(2)         --------->AHL20(2)    --------->ARR14(2) ->ARR11(1)         <---------AHL20(2)    --------->ARR11(3) --GLK1(2)       <---------AHL20(1)       <---------ARR14(2) >At4g35610      <---------AHL20(2)  --------->MYB52(1)                              --------->ARR14(2) ======MADS_MADS --------->AHL20(1)  ------>MYB46(1)                                 <---------ARR14(2) ----->AGL1      --------->AHL20(2)  ------>MYB83                                   --------->GLK1(1) ------AGL1     <---------AHL20(2) <---------MYB46(2)                    <----------DOF2    --------- ------AG       --------->AHL20(2) <---------MYB59                    --------->GLK1(2)  ------>ZmHOX2a(1) -At4g35610 --------->AHL20(2)  <-----------GT1      <-----------GT1 <---------GLK1(2)   <----------DOF2   ggaaaggtaccaaaaaaaataaattaataaaaacttaccaaacagattttgtgtttatctctctctctatagattcttttgatcacaaatccttttcgtt  1520100                                                                         --------->ANAC58                                                              <----------DOF2 --------->ARR11(3)                                                              --------------->AGL15           <------                                                              <---------------AGL15         ---------                                                             ========================================                                                             ------>ZmHOX2a(2)<---------ARR14(2)                                                           <---------ARR11(3) <---------ARR11(3)                                                           --------->ARR11(3) --------->ARR14(2)  <--                                                        <---------WOX13(1) --------->AHL20(2)--------                                                      --------->ATHB12   --------->ANAC58   <--------                                                     <---------YAB1      ----------->GT1    ---------             <---------WOX13(1)              <----------DOF2 <-----------------AG         <---------TOE1(2)           --------->ATHB12                 --------->TOE2(3)<-----------------AGL3       <---------TOE2(2)   --------->YAB1                ---------->DOF2 <---------TOE2(3)     <--------P      <---------ANAC46 ->ID1    <---------YAB1     --------->YAB1 --------->TOE1(3)<-----------------AGL2 <-----------RAV1(1)   tttgatcatattttgattgagaacaaaacaatcttcaaagtctcaacctttaagtttgattgatctttttttggtaagtaaatcttctgtcgtagattcg  1520200                                                              --------->GLK1(1)                                                              <---------GLK1(1)                                                          --------->HSFC1(1)                                                          <---------HSFC1(1)         ------>ZmHOX2a(2)                                <---------HSFB2a(2)       --------->ARR11(3)                            <<<<<<<<<TBF1       <-----------ARR10                            <---------------AGL15  <-----------GT1                                  <-----------------AGL1 -TEIL <---------ARR11(3)                      <---------ATHB12 >ARR11(1)                                    <---------ARR14(2) ===================================================================MADS_MADS -------RVE1(1)                          <------ZmHOX2a(2)--------->HSFB2a(2)                 ------- ->ARR14(1)                            ------->GAMYB--------------->AGL15     <<<<<<<<<TBF1 --------- -ARR14(2)                            --------->MYB46(3) <---------LBD16 <---------ANAC58   <-------- >ARR14(2)     <----------DOF2  --------->YAB1--------->ARR14(2)         <---------ANAC58 <---------LBD16   atattttctgatcttctcttttcgaattcttcaatcttcaacgatcccaatcttcttcttctggaaatctattttgcttcttcttcaaattttctgggga  1520300                                                                                                  <--                                                                                                 <---                                                                                                -----                                                       --------->ANAC58    <---------At4g35610 <-----      <---------GLK1(2)                                --------->ANAC58    --------->At4g35610------- ---->GT1                                            ---------->DOF2       <---------ZAT2   --------- >LBD16                                            <---------YAB1 --------->ATHB12     --------->KAN4(2) -LBD16         <---------AHL20(2)        <---------HSFB2a(2)    <-------TEIL        --------->GLK1(2)   aaaaatcaaattcttgagttaattagactccgattttgttgaatcgagaaacgatgaaagcatcgggttcattagatagctggagagaatatttccgacg  1520400  Previous    Next  AGI:  At5g05140.1    Description:  transcription elongation factor-related. similar to DNA binding / protein binding / transcription regulator [Arabidopsis thaliana] (TAIR:AT3G10820.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18227.1); contains InterPro domain Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal; (InterPro:IPR010990); contains InterPro domain Transcription elongation factor, TFIIS/CRSP70, N-terminal; (InterPro:IPR014765) Range:  from: 1519914    to: 1522668    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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