Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      ---------->DOF2                                                   --------->YAB1                 <----------DOF2  --------->DAG2                            --------->HSFB2a(2)                   <---------DAG2 ---------->DOF2                            <---------HSFB2a(2)              <---------ARR11(3) ---->DOF2                              <----------DOF2            <---------AHL20(2) -----AGL15                       ------>ZmHOX2a(1)--------->AHL20(2) ---------->DOF2 ---->AGL15                  --------->WOX13(1) --------->WOX13(1) --------->AHL20(2)   agaaaaagttgtctgattccactatctgaatcaatcctataactttctagcaattaaagtctcagaaaattaaaaagaagataacttttttttactaaga  1476000                                                              <---------AHL20(2)                                                            <----------DOF2                                                           ------>ZmHOX2a(2)                                                          <---------RVE1(1)                                                          <------ZmHOX2a(2)                                                         --------->ARR14(3)                                                         --------->ARR14(2)                                                         <---------ARR14(2)                                                         --------->ARR11(3)                                                         <---------ARR11(3)                                                         <---------ARR14(3)                                                         --------->AGP1                                                        <---------CCA1(2)                      ------                                                      --------->HSFB2a(2)           =================                              <---------MYB52(1)      <---------HSFB2a(2)           <----------DOF2                     --------->ATHB12  <---------MYB52(1)<---------AGP1      <---------YAB1 <--------      --------->TOE1(3)      <-------GAMYB         <-----------GT1 --------->YAB1  <---------ANAC58      --------->TOE2(3)   <---------At5g28300  <----------DOF2--------->AHL20(2)   <---------ANAC58   acaaaaacccttaaaatccatcttcatttgccgttgtctccattagtttcttttttccagatctttaaatgaaaataatctcattgctttagaaacgaac  1476100                                                                         ------>ZmHOX2a(1)                                                                        --------->TOE2(3)     <---------TGA1a                                                 <---------ARR14(2)   <------NtERF2                                 <---------ANAC55(2) --------->GLK1(2) <---------ANAC46                                --------->ANAC55(2) --------->ARR14(2)    <---------WRKY12 ->TEIL--------->ALFIN1                       <---------ATHB12      <---------GLK1(2)    <-----------HVH21 ==============bZIP_DOF                <---------ZAT14           --------->YAB1  <---------ZAT14 -MYB52(2)                             --------->ZAT14      --------->ARR11(3)  ------>ZmHOX2a(1)   atggcgcaagtgggcataccaaaaactaataacttaagcactaaactaatcaagtattgagagataatcagaatcctaaatcctgaactggggtcaaatg  1476200                                                                              ----------->RAV1(2)                                                                             ------>MYB83                                                                             -------->P                                               ---------->DOF2               --------->MYB52(1)                                          <---------------AGL15              ------>MYB46(1)        <                                         ----------------->AGL2             --------->MYB55(1)      <                                         ----------------->AGL3            <---------MYB46(2)       <  --------->AHL20(2)             ----------->GT1   ---------->DOF2         <---------MYB59         <-  <---------AHL20(2)       --------->ZAT18--------------->AGL15         <-----------GT1 <---------ZAT6   ccaatttatcaaatgagcatacttctaagtggacgaagtgaaaaccagataaagaaagaaaacgagagagagagtaacctacctgagctagagttactag  1476300             <------NtERF2             --------->ATERF1(1)             <---------LBD16            <---------ATERF1(1)            ------>NtERF2           <---------DEAR3(1)           --------->DEAR3(1)         <-----------HVH21     --------->KAN4(2)    <----------TaMYB80    <---------GLK1(1)    --------->HSFB2a(1)    <---------KAN4(1)    --------->KAN4(1)    --------->GLK1(1)    <---------HSFB2a(1)   <---------ARR11(3)        --------->TOE1(1)   --------->ARR14(2)        --------->TOE2(1)   --------->ARR11(3)   ------>NtERF2   <-----------ARR10   ----------->HVH21   <---------KAN4(2)   --------->WRKY12   <---------ARR14(2)  --------->WRKY38(1)   ---------->TaMYB80<---------At4g35610                                       <---------WOX13(1)  <------NtERF2      --------->At4g35610                                      <---------ANAC58 --------->LBD16  --------->ARR14(1)                                         --------->ATHB12 ---------ANAC46 --------->ARR14(2)                                        <---------WOX13(1) ---------ANAC58 <---------ARR14(2)               <<<<<<<ZML2            --------->ATHB12 ---------ANAC58 <---------GLK1(2)     --------->AHL20(2)      <----------DOF2<---------ANAC58 --------LBD16 --------->LBD16 <---------CCA1(2)  <---------AGP1        <---------YAB1    --------->TOE2(3)   tggcggatattcgtcgccggattcgctgacctcgtatcaaattaaaaccctagaactgaaattgacttttgaagatgattgattgctacaaatctcaata  1476400                                                        ------------>CBF                                                     --------->ZAT18             <----------DOF2                         <---------ZAT14   ---------->ID1          *TSS                                       --------->At4g35610  <----------DOF2        --------->KAN4(2)                       <---------DEAR3(2)   <-----------GT1      <-------TEIL                            <------NtERF2       <---------ARR14(2)  --------------->AtSPL3    --------->LBD16 <---------ANAC58      ------->TEIL  <---------------AtSPL8   ------->GAMYB    <---------ANAC46      --------->ARR14(2)  --------------->AtSPL8<-----------GT1     --------->ETT(2)----------->HVH21 ---------->DOF2--------->YAB1              <---------ANAC58<---------ATHB12   catgaaagtacattcctttcaaaattcaaccggactaaaccgaatgtcgtcggtctgcaccaatgacgaatttgcccttttggcattttttcttccattt  1476500            ------------>CBF            <---------------AGL15           <-----------------AGL1                                                      <------ZmHOX2a(1)           ----------------->AGL1               ------>ZmHOX2a(1)                   *TSS   <---------AHL20(2)           <-----------------AG                 ====================HOX2a_HOX2a  --------->ANAC46        <---------GLK1(1)                    ---------->ID1                      --------->ANAC58       ---------->DOF2                   <---------ANAC58  <---------ARR14(2)  --------->ANAC58     <------MYB46(1)                     <---------ANAC55(2)     <----------DOF2 --------->ANAC58     <------MYB83   <------ZmHOX2a(1)    --------->ANAC55(2) =================================HOX2a_HOX2a   <--------P    --------->YAB1          <---------ANAC58  --------->ARR14(2)  --------->ANAC58  <---------ANAC46<---------TOE2(3)      <---------ANAC55(1) ------>ZmHOX2a(2) <---------ALFIN1  <-------GAMYB <---------ATHB12  <-----------RAV1(2) <---------ANAC46         --------->ANAC46   actgggttggaaagcccaataaggaactgaaacggcccagattacttgtccttgttttgtggatcgtcttttctctaacacacacaccaggatttaatct  1476600                            <---------ANAC58                            <---------ANAC58                       <------NtERF2                     <---------DEAR3(1)      ----------->GT1     <------ZmHOX2a(2)                 <-----------GT1     >>>>>>>>>TBF1     <---------At4g35610            <----------DOF2<---------ZAT2--------->GLK1(2)  ------>ZmHOX2a(1)   gagactcgtttcatcttttttactcggcgagcttgtgaagaagaaactggtgatttcatctccttcgatcactcccaaggtatcgtcttgttctctcgct  1476700                                                                             <---------ICU4                                                                             <--------HAHB4                                                                             --------->ATHB51                                                                            <---------YAB1                                                                       ==============================HOX2a_HOX2a                                                                       ------>ZmHOX2a(2)                                                                       ==============================                                                                      <---------GLK1(1)                                                                      --------->GLK1(1)          ----                                                                     <---------AGP1              ====                                                                     <---------ARR11(3)         -----                                                                     --------->ARR11(3)       ------>ZmHOX2a(1)                                                                     --------->ARR14(2)       =======                                            --------->KAN4(2)        <---------ARR14(2) <-----------GT1                  --------->ICU4           <---------KAN4(1)        <---------CCA1(2) <---------HSFB2a(1)                  <---------YAB1     <---------AtLEC2           <---------ANAC46  <---------TOE2(3)     <---------ZAT14             <----------DOF2                <-----------RAV1(1)   --------->HSFB2a(1)    <-----------HVH21  <-----------GT1    ------->TEIL    --------->REM1(1) --------->ICU4<----------   cttcgccttcactgatggtgatgattttcgttttcctttgaatgaatgttctctctggctacatttctgtggatctccattattaagaattttctcctcc  1476800                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                 ----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                               ------            <------ZmHOX2a(2)                                                                  ------           <---------ARR14(2)                                                                  <-----           --------->ARR14(2)                                                                  ------ ===HOX2a_HOX2a========================HOX2a_HOX2a                                             ------ -->ZmHOX2a(1) ------>ZmHOX2a(1)                                                               <----- ==================HOX2a_HOX2a                                                                <------ ---------------->WRI1   ------->TEIL                                    --------->YAB1       ------- ==================HOX2a_HOX2a                  <---------YAB1<---------YAB1        <---------At4g35610 -GT1   --------->HSFB2a(2)     ------>ZmHOX2a(2)          <---------MYB52(1) ------->TEIL   --------   ttctaaatttcgcgatcctgtttcatgaatttgatccgcttgtgttgattttgattctacagttatgtttttcgattatgagcctctgatgctcgtagat  1476900  Previous    Next  AGI:  At5g05000.1    Description:  ATTOC34/OEP34 (Translocase of chloroplast 34). Identical to Translocase of chloroplast 34 (TOC34) [Arabidopsis Thaliana] (GB:Q38906;GB:Q0WNL4;GB:Q8L9G5;GB:Q9FF74;GB:Q9GDD2); similar to TOC33 (PLASTID PROTEIN IMPORT 1) [Arabidopsis thaliana] (TAIR:AT1G02280.2); similar to TOC33 (PLASTID PROTEIN IMPORT 1), GTP binding [Arabidopsis thaliana] (TAIR:AT1G02280.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67058.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63847.1); contains InterPro domain AIG1; (InterPro:IPR006703); contains InterPro domain Chloroplast protein import component Toc34; (InterPro:IPR005688) Range:  from: 1474114    to: 1476410    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g05010.1    Description:  clathrin adaptor complexes medium subunit-related. Identical to Coatomer subunit delta [Arabidopsis Thaliana] (GB:Q93Y22;GB:Q56WY5;GB:Q93Y42;GB:Q9FF73); similar to unnamed protein product [Vitis vinifera] (GB:CAO41963.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60953.1); contains InterPro domain Longin-like; (InterPro:IPR011012); contains InterPro domain Clathrin adaptor, mu subunit, C-terminal; (InterPro:IPR008968) Range:  from: 1476584    to: 1480198    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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