Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ---------                                                                                          <---------ANAC58                                                                                          <---------ANAC58                                                                                         <---------MYB46(3)                                                                                      <---------ANAC58                                     <-----------RAV1(2)                             --------->ZAT2                                --------->ANAC58                         <-------GAMYB<---------ANAC58                                --------->ANAC58                        <---------MYB46(3)<-------GAMYB     <---------ANAC46     <---------MYB52(1)                            <-----------RAV1(1)<---------WOX13(1)     ----------->GT1    <---------MYB46(3)                            <---------At4g35610<------MYB46(1) --->ZAT14              --------->MYB52(2)                            --------->At4g35610<------MYB83 ----ZAT18            <---------MYB52(1)  <------ZmHOX2a(1)      --------->ARR11(3)  <---------ZAT2<- ----ZAT14---------->DOF2<-------GAMYB --------->At4g35610   ---------->DOF2   ------>NtERF2---------   acttgtggagtttaaaggaatgcagttcgttgggaagcctcagaggaataaaacgctcgctgagaaagatgctgctgttgaggccttagcttggttgact  1434400                                                                                                   <-                                                                                              -------                                                                                              -------                                                                                             --------                                                                                            <------NtERF2                                                                                            <--------                                                                                            ---------                                                                                           <---------ATERF1(1)                                                                                           ------>NtERF2                                                                                         <------NtERF2                                                                                         --------->ATERF1(1)                                                                                         --------->RAP2.3(1)                                                                                        <---------ORA47(2)                                                                                        <---------RAP2.3(1)                                                                                        <---------DEAR4(2)                                                                                        <---------ATERF1(1)                                                                                       <---------DEAR3(1)                                                                                       <---------RAP2.3(3)                                                ----------->RAV1(2)                    <---------RRTF1(3)                                        <---------ARR14(2)                             <---------RAP2.3(2)                                        <---------GLK1(2)                             --------->RAP2.6(3)                                        --------->ARR14(2)                            --------->SPL7         --------->YAB1               ----------->ARR10                               <---------ORA47(1)      --------->YAB1           <---------TOE2(3)<---------At4g35610                  ================ >WRKY38(1)<---------------AtSPL8<------ZmHOX2a(1)          --------->YAB1           <------ZmHOX2a(1) --------CCA1(2)              --------->YAB1  <---------ALFIN1                      ----------->HVH21 >WRKY12<---------YAB1----------->RAV1(1)--------->GLK1(2) <---------ZAT6           <---------SPL7<--   catacctctgataatagtactggccaacacaatgaggatgcagattctccacctgatgttactgataacatgcttaaactccttggaggacggcgcaggc  1434500                                                                                         ---------->DOF2                                                                                        --------->AtMYB61                                                                                        ------->GAMYB                                                                                       --------->MYB46(3)                                                                                       <---------MYB55(2)                                                                                      ------>MYB83                                                                                      ------>MYB46(1)         --------->ANAC58                                                             -------->P         --------->ANAC58                                                            --------->MYB55(1) -----ZmHOX2a(2)                                                                    <---------MYB111(1) -->ANAC58                                                                          --------->MYB46(3) -->ANAC58                                      <------MYB46(1)            ------>ZmHOX2a(2) ->DEAR3(1)                <------MYB83         <------MYB83              <------ZmHOX2a(2)       --- ---RAV1(2)                <------MYB46(1)  --------->ARR14(2)           <---------ARR11(3)     ----- >ATERF1(1)             --------------------->WRI1         <------------AtMYB77     <---------MYB46(2) =====HOX2a_HOX2a ------->TEIL              <---------GLK1(2)            --------->ARR11(3)     <---- -------ARR14(2) <---------GLK1(2)          <---------ARR14(2)   <----------DOF2    <---------MYB111(2)   gatccaagggcaagtaattgaatctctgtaggttttttcgcagacagatttggtttgtgtaactgtgctttggacgatctcaaataccaaccaaagcaga  1434600            <---------ZAT14            <---------ANAC46            --------->ZAT14            <---------ANAC58           <---------ZAT6    --------->HSFB2a(2)        <---------YAB1                 <---------ANAC58       <---------ZAT14       <---------HSFB2a(2)      --------->YAB1            <---------ZAT14               --------->ZAT14    --------->GLK1(2) -------->GT1                   --------->ZAT14              <---------REM1(1)--------->AHL20(2) ---->ARR14(2)              ------->TEIL                     <---------ZAT6--------->YAB1  <--------- -----ARR14(2)              <-----------GT1  <-----------RAV1(1)  ----------->GT1--------->ARR11(3)   tagagaaattatacttcagtagtcactatgtaactatagtgtcgtttttggggcagaacaatagtgtagggttataaacataaaatctagaaactttagg  1434700                                                     <-------MYC2                                                     ------->MYC3                                                     <-------MYC3                                                     ------->MYC2                                                     <-------PIF5                                                     ------->MYC4                                                     <-------MYC4                                                     ------->PIF5                                                    >>>>>>>>>>HY5                                                    <---------O2                                                    --------->TGA1a                                                    --------->O2                                --------->YAB1      <---------TGA1a                           <-------GAMYB            <---------PIF3(3)                           ===================================MYC_MYB                          ----------->GT1           --------->bZIP60(2)                         <---------TOE2(3)          <---------bZIP60(2)                     <------------CBF               --------->PIF3(3)                    >>>>>>>>>>AGL22                 <<<<<<<<<<HY5                    >>>>>>>>>>AGL20                ------>NtERF2                    >>>>>>>>>>AGL24               <---------ALFIN1                     --------->ANAC58                    -------->ATHB1               ----------->HVH21                     --------->ANAC55(1)                    <------------ATHB5          ------>NtERF2                          --------->ANAC55(2)                    <--------ATHB1             --------->bZIP60(1)                     <---------ANAC55(2)                    <---------ICU4             --------->ATERF1(2)                     --------->ANAC46                    --------->YAB1             --------->DEAR3(1)          <---------ANAC58                    --------->ATHB51           <---------ATERF1(2)         *TSS        --------->ANAC58                   --------->ICU4 <---------YAB1<-----------HVH21          <---------ANAC58                   <---------ATHB12            --------->RAP2.6(2)        <---------At4g35610                   <---------YAB1<-----------GT1<---------RAP2.6(3)       --------->ZAT2                   <---------ATHB51--------->YAB1<------NtERF2<-----------GT1  <---------ANAC58                 --------->YAB1<---------YAB1  --------->RAP2.3(2)        <---------ZAT2               ------------>CBF--------->ICU4  --------->RAP2.3(3)        --------->At4g35610 -DOF2  ------->TEIL--------->ATHB12           --------->ANAC46 --------->ZAT6 <---------ANAC58   ggctatgatgtattttgaacaataattggggttattatcatcttatatgccgccacgtggcatttaactctctctgagcttgctcgcttacgcaactctc  1434800                                      ----------->GT1            <---------ANAC58                                     <---------AtMYB61           <---------ANAC58                   --------->HSFB2a(2)<---------MYB46(3)         <---------ANAC46                --------->GLK1(2)  <---------ANAC46           <---------MYB52(1)              <---------At4g35610----------------------->TaNAC69(2)         <----------DOF2      <---------ANAC46               <-------GAMYB         ------>ZmHOX2a(1)   tctctctctctctttgagcttctgtaatggctacttggagtggtttcaacgtctcttcttctccgttgcttaggcttcggtcttcctccgtctcaaatgt  1434900                                     <---------ARR14(2)                                     <---------MYB52(1)                                    <-------GAMYB                                   <---------DEAR3(2)                                   <---------MYB46(3)                                  <---------DEAR3(1)                                 <------NtERF2                                 --------->ATERF1(1)                                ------>NtERF2                                ------------>AtMYB77                                <-----------HVH21                                >>>>>>>>>E2Fd                               <---------ANAC46                                  <------NtERF2                               <---------DEAR3(1)                                >>>>>>>>>E2Fc                               --------->DEAR3(1)                               ------>NtERF2                              --------->RAP2.3(1)                              --------->ANAC58                              <------NtERF2                                    --------->ANAC46                              --------->ATERF1(1)                            <---------ANAC55(2)                             --------->LBD16                          <-------GAMYB                             <---------RAP2.3(1)                  <-----------RAV1(1)                             ------>NtERF2                        ------->GAMYB--------->ANAC58------                             <---------ATERF1(1)                 <------------AtMYB77          <-----          <---------MYB52(1)<---------ATERF1(2)                 --------->At4g35610            <-----        <---------ANAC58    --------->ATERF1(2)                 <---------At4g35610  --------->ARR14(2)        <---------ANAC58    <---------RAP2.6(2)             --------->ANAC46 <---------ANAC58 -------   <---------At4g35610      <---------RAP2.3(3)             --------->ANAC58 <---------ANAC58 <------   --------->HSFC1(2)       <---------DEAR3(1)        <---------AtMYB61    <-----------GT1--------->MYB52(1)   <---------HSFC1(2)------>ZmHOX2a(1) --------->MYB52(2)   --------->ANAC58 --------->ANAC55(2)   --------->At4g35610     <---------LBD16          <----------DOF2  <---------MYB46(3)   -----------   cactaagcttccgtttctctctcctatttgccggcgtcggttactggcagaacgctttggtctcgcaactgtcgttgttacgcgccaaaacctcacggtt  1435000                --------->ALFIN1               <-------GAMYB               <------NtERF2              <---------MYB46(3)              <---------DEAR3(2)             <---------AtMYB61            ------>NtERF2            --------->ATERF1(1)            <------NtERF2            <---------ABI4(1)           ------>NtERF2   <---------ARR14(2)           <---------RRTF1(1)           <---------RAP2.3(1)          <---------RRTF1(2)          <---------RAP2.3(2)         <---------At4g35610                               --------->LBD16         <---------LBD16   <---------ARR11(1)             <---------ANAC46         --------->At4g35610                            ------>NtERF2        <-----------RAV1(1)<-----------ARR10           --------->DEAR3(1)        <---------ATERF1(1)--------->ARR14(2)         --------->ATERF1(1)      ----------->RAV1(2)  ------->TEIL              <---------RAP2.3(1)   <---------MYB52(1)<---------At4g35610             ------>NtERF2  <-----------HVH21  <---------ZAT2                  <---------ATERF1(1) --->ARR14(2)--------->ALFIN1                 --------->TOE2(2) ----ARR14(2)<---------ANAC46        ---------->DOF2--------->ANAC58 ----MYB52(1)<---------DEAR3(1)<-----------RAV1(2)  --------->ANAC58 -->At5g28300<---------DREB2C(2) --------->LBD16 ----------->HVH21                    ------->GAMYB -GAMYB<---------DEAR3(1) <---------CCA1(2) --------->GLK1(2)                         --------->AtMYB61 ->AtMYB77<---------DEAR3(1)   <---------LBD16--------->TOE1(2)   --------->ARR11(3) --------->MYB46(3)   actccgtcgtctgcggcggtggaagctcgtatctcagggaaaagagaacctatgacgcctccgtataacatattgatcactggctcaaccaaaggtttca  1435100                                                                                                    -                                                                                                -----                                           ----------->GT1                                     <-----                                           <----------ID1    <-----------GT1                   ------                                          ----------->GT1--------->AHL20(2)          <---------MYB46(3)        <----------DOF2       <---------AHL20(2)         <---------AHL20(2)   ---------->DOF2 <------   ttcactctgtctttgtcaattgactcgagtttttaatcttcagaagggaaaaaacatatttttttatctcattgtgtctctaaagagtggtttttgattt  1435200                                                    <------NtERF2                                                   ------>NtERF2                  --------->GLK1(1)               <---------ETT(2)        <---------TOE1(3)                         ----------->HVH21                   ----------->RAV1(2)  <---------WOX13(1)                            <---------ATERF1(1)                  --------->GLK1(2) -------->ATHB12  --------->CCA1(2)           <-----------RAV1(2)                 ----------->ARR10 ---->ATHB12      <---------GLK1(1)       ---------->DOF2                     ----------->GT1 ----AHL20(2)    --------->ARR14(2)     --------->HSFB2a(2)                 <-----------RAV1(2) --->AHL20(2)    <---------ARR14(2)     <---------HSFB2a(2)               <---------AGP1 ---WOX13(1)    <------ZmHOX2a(1)    --------->GLK1(2)       <---------YAB1<------ZmHOX2a(2)>>>>>>>>>   attgattgttcaggtataggatatgcattagctagagagtttctgaaagcaggcgacaatgttgtgatttgctctagatcaggttagaacctgtccccat  1435300  Previous    Next  AGI:  At5g04895.1    Description:  ATP binding / helicase/ nucleic acid binding. similar to helicase domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G35920.1); similar to ATP binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G01130.1); similar to helicase domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G48650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15457.1); similar to putative helicase [Oryza sativa] (GB:AAL58955.1); similar to hypothetical protein OsI_013097 [Oryza sativa (indica cultivar-group)] (GB:EAY91864.1); contains InterPro domain Region of unknown function DUF1605 (InterPro:IPR011709); contains InterPr Range:  from: 1428725    to: 1434770    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g04900.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT4G13250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15332.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 1434775    to: 1437331    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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