Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <---------ZAT6                         --------->ARR14(2)                               <---------ANAC58                         <---------ARR14(2)                               <---------ANAC58                   --------->ATHB51                  <                               <---------ANAC46                   --------->ATHB12     <---------HSFC1(2)                       --------->ARR14(2)                        --------->ICU4        <---------KAN4(1)                       ------->TEIL                      --------->TOE2(3)             <---------HSFB2a(1)          ---------->DOF2      <---------bZIP60(2)       --------->TOE1(3)             --------->KAN4(1)      --------->ANAC58 <---------ARR14(2)               ----------->RAV1(2)            --------->HSFC1(2)      --------->ANAC58 --------->GLK1(2)               -------->P<---------YAB1--------->ANAC46     - ->ARR11(3)           <---------GLK1(2)         --------->ATHB12--------->TOE2(3)      --------->HSFB2a(1)   tgttagcctagcaaaagagaccctgaatctgtgtcgtgttatgttcagagttattgcaacctgaaacattattggatattcacaccagaacgttcttcta  1426800    <-------TEIL                                                                                  <--   --------->ARR11(3)                                                                             --- ---------TOE2(3)         <---------GLK1(2) <---------YAB1      --------->ANAC55(2)      --------->ARR11(3) -------->MYB59 <---------YAB1            <-----------GT1       <---------ANAC55(2)    <-------TEIL   tttaggttcttgaaaattctaatagacaaattctcttcttgaaatcaccattcttgaaattaagtcacataacttctcagaaaaaatgatacatcttctc  1426900               --------->TGA2(2)              <-----------TGA1             <---------TGA2(1)             <---------TGA1a             --------->bZIP60(1)             <---------bZIP60(1)             --------->ANAC55(2)             --------->TGA2(1)             --------->O2             <---------O2             --------->TGA1a            ----------->STF1            <-----------STF1           --------->MYB52(1)           <---------TGA2(2)          ----------->TGA1            --------->ANAC46       --------->ANAC58      <----------DOF2  - -------At4g35610                     --------->ANAC58       --------->ANAC58  <----------DOF2    >>> ------>At4g35610    <---------LBD16  --------->ANAC58     ---------->DOF2  <---------YAB1    -------   aactgattaaaactgacgtcatttggggaacataacttacaagacataataaacttgtgaagaaagcaagagaacattatgctttctttgtaagagaagt  1427000                                              --------->ANAC58        --------->ARR14(2)                                              --------->ANAC46        <---------ARR11(3)                                              --------->ANAC58        <---------ARR14(2)                                       --------->YAB1                --------->GLK1(1)                                       <---------ICU4               ---------->TaMYB80        <---------ICU4             <---------YAB1                   <---------KAN4(2)        --------->YAB1         <---------ARR11(3)                 <------ZmHOX2a(1)       --------->ICU4          <---------GLK1(2)              --------->TOE1(2)   <---------YAB1              --------->ARR11(3)       --------->LBD16            --------->ZAT6 -------->TOE2(2)             <---------RVE1(1)        --------->RAP2.6(2)       --------->MYB52(1) >>>>>>MYB98          ---------->DOF2 <---------YAB1   --------->ANAC46   <------------CBF ---->GT1    ----------->RAV1(2)--------->GLK1(2)     <---------LBD16--------->KAN4(1)   aacatatgaatgatgacctgagacaaaagaagagattttgatgatcacaagacatagccgcaaaactaggaatatccattgcataacagtagagaaaatg  1427100                                                            <---------YAB1                                                  ------>MYB46(1)                           --------->AHL20(2)     ------>MYB83---------->DOF2                           <---------AHL20(2)   <---------MYB111(1)                         <-----------TBP       --------->ANAC55(2)                   <-----------ARR10           --------->ANAC55(1)           --------->ARR14(2)                  --------->ANAC46           <---------ARR14(2)                  <---------ANAC55(2)    <------------CBF --------->TOE2(3)    --------->YAB1  --------->YAB1   <-----------GT1     <-----   <---------ICU4 <---------CCA1(2)  ------------>CBF    <---------YAB1   *TSS           ---------->DOF2   gctaagtattgcagaaattcaaatcttatttatatgcagagcaataaacacctaatagtatcatcaaagctcaaatttaaccagttcataagaaagagga  1427200             <---------ICU4             -------->HAHB4             --------->YAB1            <---------ATHB51          --------->YAB1         --------->AHL20(2)         <---------AHL20(2)        --------->ICU4                                                                             --     <---------AHL20(2)                                                                           ---     --------->AHL20(2)                                                                       <------ZmHOX2a(2)   --------->ANAC55(2)                                                  ---------->ID1       <-------   <---------ANAC55(2)              --------->DAG2           <---------TOE1(1) --------->ARR14(2)----   ----------->GT1            ----------->RAV1(1)            <---------TOE2(1) <---------ARR14(2)----   --------->ANAC58 <------NtERF2  ---------->DOF2     <-------TEIL <----------DOF2          --------   --------->ANAC58 --------->At4g35610          <---------LBD16 ====================================HOX2a_HOX2a -ZmHOX2a(1)--------->ICU4  --------->At4g35610  <---------ANAC46<------ZmHOX2a(1)       ---------->DOF2   aagataagtaattaataatggcagcgagacagcaacaaaaaggaacaggcttcggggttcaatacgaggactttgtccccaaatccgaatggaaagatca  1427300                                   <------MYB46(1)                                   <------MYB83                                   <---------TOE2(3)                                  --------->MYB59                                --------->YAB1                                  --------->MYB111(1)                           <---------YAB1                                  --------->MYB111(2)                          --------->AHL20(2)                                  --------->MYB46(2)                           <---------AHL20(2)                                 <--------P                                    --------->AHL20(1)      --------->RAP2.6(2)        <---------MYB55(1)                           --------->YAB1   --------->ANAC58        ------>MYB83                                       <---------ICU4   --------->ANAC58        --------->MYB52(1)                                <---------YAB1 ------->TOE1(3)           ------>MYB46(1)                                <---------AHL20(2) -------->RAV1(2)         ----------->HVH21                               --------->AHL20(2)  <------MYB83 --ARR11(3)              <---------MYB59                              <---------MYB46(3)      <------MYB46(1) ---->P------>NtERF2  <---------WRKY18(1)                             ----------->GT1    --------->ATHB12 --->TEIL            --------->WRKY12          --------->YAB1     <---------AtMYB61     --------->ICU4 ->ARR11(3)          --------->WRKY38(1)       ----------->GT1    <-----------RAV1(1)   <---------YAB1   acctgaagccaccattctcaacattgacctaacaggttggtatacaaaatagtaactttggactacttatggtggtttaattataatgttatgatttggt  1427400                                            --------->ZAT2                                            --------->At4g35610                                       --------->ZAT14                                       <---------ZAT14                                       --------->ZAT18                                   ------->TEIL                                <---------ANAC46                                --------->ANAC55(2)                                <---------O2<---------ZAT2                                <---------ANAC58                                <---------ANAC55(1)                                <---------ANAC58                                <---------ANAC55(2)                                <---------TGA1a                               ----------->STF1            ==============================bZIP_DOF            ---------->DOF2  ----------->TGA1                                              <---------ARR14(2)   <---------TOE2(3)         ----------->HVH21                                             --------->ARR14(2)   <---------TOE1(3)     =================bZIP_DOF           <-----------HVH21 <---------MYB52(1) ---------->DOF2         ---------->DOF2    <---------At4g35610          --------->HSFB2a(1) =========================================bZIP_DOF   <---------YAB1      <---------HSFB2a(1)       <-   ttttaaaggttttgcaaaggagcaaatgaaagtgacgtatgtgcacagctcgaagatgataagagtcactggagaacgtcccttggctaatcggaaatgg  1427500                                                            <----------DOF2                                                  <-------TEIL                                                 <------ZmHOX2a(2)                                                 ==================================HOX2a_HOX2a                                                 --------->CCA1(2)                           --------->ANAC46     --------->ARR11(3)                          --------->LBD16       <---------ARR11(3)                --------->ZAT18                 <---------ARR14(2)                              <----                <---------ZAT14                 --------->AGP1              =========================                --------->ZAT14       <---------ANAC46    --------->At4g35610   --------->AtMYB61 -----NtERF2 --------->ALFIN1 <---------GLK1(2) --------->ARR14(2)          ------>ZmHOX2a(1)   =====   agccgtttcaacgaggtgttcactgttccacagaattgtttagtggataagatccatgggagctttaagaacaatgtcctcaccatcaccatgcctaagg  1427600                                                                 <------NtERF2                                                                 --------->RAP2.3(1)                                                                ------>NtERF2                                     <---------AGP1             <---------ORA47(2)                                     <<<<<<<ZML2                <---------RAP2.3(1)                             --------->HSFB2a(1)                <---------DEAR4(2)                             <---------HSFC1(2)                 <---------ATERF1(1)                             <---------HSFB2a(1)                <---------ERF1                             --------->HSFC1(2)   <---------At4g35610                         --------->LBD16          <---------ZAT14--------->ATERF1(1)                 <---------CCA1(2)--------->HSFC1(1)           <---------RAP2.3(3)               <---------ANAC58   <---------HSFC1(1)           <---------RAP2.6(2)               <---------ANAC46   --------->HSFB2a(2)         --------->ATERF1(1)               <---------ANAC58   <---------HSFB2a(2)<---------LBD16          --------->ZAT2--------->HSFC1(1)     <---------At4g35610   <------ZmHOX2a(2)    --------->HSFB2a(2)    --------->At4g35610 --ZmHOX2a(1) <------NtERF2<---------GLK1(2)<---------At4g35610<---------RAP2.3(2)                  - =========HOX2a_HOX2a   <---------HSFB2a(2) --------->At4g35610<---------DEAR3(1)                   < =========HOX2a_HOX2a   <---------HSFC1(1)  <---------ZAT2  --------->DAG2   <------ZmHOX2a(1)   ----   agacgatcacgaaggtggcttatcttccagaaacttctagaactgaagctgctgctctggagaaggcggcgaagctagaggagaagagattgttagaaga  1427700  Previous    Next  AGI:  At5g04885.1    Description:  glycosyl hydrolase family 3 protein. similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G20950.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G20950.2); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G20940.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41897.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66015.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67436.1); contains InterPro domain Glycoside hydrolase, family 3, C-terminal; (InterPro:IPR002772); contains InterPro domain Glycoside hydrolase, Range:  from: 1422800    to: 1426880    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g04890.1    Description:  RTM2 (RESTRICTED TEV MOVEMENT 2). similar to heat shock family protein [Arabidopsis thaliana] (TAIR:AT5G20970.1); similar to Hsp20/alpha crystallin family protein [Solanum demissum] (GB:AAK91893.1); contains InterPro domain HSP20-like chaperone (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20 (InterPro:IPR002068) Range:  from: 1427174    to: 1428455    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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