Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <----------DOF2                              <---------ARR11(3)                    ===================HOX2a_HOX2a                    ------>ZmHOX2a(1)                                                         <------           --------->AGP1     --------->ARR11(3)          --------->ANAC58                  <--------        <-----------RAV1(2)------>ZmHOX2a(2)   <---------At4g35610                        ------>ZmHOX2a(1)     ==================================HOX2a_HOX2a        --------->ANAC58                ===========     <------ZmHOX2a(1)    <---------At4g35610  --------->At4g35610                  ------->TEIL     =============================HOX2a_HOX2a  --------->ZAT2                      <---------GLK1(2) ----->HSFC1(1)     ==============HOX2a_HOX2a  <---------ZAT2        <----------DOF2--------->ARR14(2) ------HSFB2a(2)    <----------DOF2           <-----------ARR10   <-----------GT1<---------ATHB12 ----->HSFB2a(2) ---------->ID1 ------>ZmHOX2a(2)   --------->At4g35610         --------->ANAC46    <   tagagcaggaccaggtctagtccttttgatctgatctttgtatttgcagagctcagcatcaagcctcttaactttctcttccactgaatctcctctttta  1409500                                                                     --------->MYB46(3)                                                                     <---------MYB55(2)                                                                    --------->ANAC58                                                                    ------>MYB83                                                                    ------>MYB46(1)                                                                  --------->DEAR3(1)                                                                  --------->AtMYB61                                                                  <---------ALFIN1                                                                 --------->MYB46(3)                                                               <-----------GT1  ------>ZmHOX2a(2)                                          ------>ZmHOX2a(2) <---------At4g35610                                       <---------ARR11(3) --------->At4g35610                                     <---------YAB1<-----------HVH21 ---AHL20(2)                                        <-----------GT1 --------->ANAC58 --DOF2   --------->TOE2(3)                 ---------->DOF2--------->ARR11(3) ========HOX2a_HOX2a                     ------>ZmHOX2a(1)--------->YAB1 ---------AGP1          --------->YAB1   ===========================HOX2a_HOX2a           ---------->DOF2   ttgatctgaaaacatcaaaactggaatcaacatcaagtagctcctcaaaagttttaactatgatctcaccacccatcagttcatctaaaatccaaagcta  1409600                  --------->At4g35610                --------->DAG2               ---------->DOF2         --------->HSFB2a(2)     --------->YAB1      --------->ARR11(3)         --------->AHL20(2)      <---------ARR11(3)<------ZmHOX2a(1)     <---------CCA1(2)<---------TOE2(3)      --------->CCA1(2)   <----------DOF2<---------At4g35610   ---------->DOF2   aatcgctatatctcgaataaagctgaggaaaacaatgaaattgaaagaaacgagagagagagagagagagagagagagagagagagagagagagagagag  1409700                                       ================================HOX2a_HOX2a                                       <------ZmHOX2a(2)                                      <-----------HVH21                                --------->ARR14(2)                                            -------                                <---------ARR14(2)                                            -------                               ===============HOX2a_HOX2a                                    <-------                               <------ZmHOX2a(1)                                             <-------                            ==================HOX2a_HOX2a                                    --------                            <------ZmHOX2a(1)                                 <---------YAB1 --------                          --------->ALFIN1                             <----------DOF2       <-------                         =====================HOX2a_HOX2a       --------->ATERF1(1)        ----------                         <------ZmHOX2a(1)--------->At4g35610   <------ZmHOX2a(1)          <---------ATHB12   agagagagagagagagagagagagagaggaggaggaacccgatcagaggcatcttgaatagacggaggaggctctttgttattcttcgctccaaagattc  1409800 -->ARR14(1) -->GLK1(2)                                  --------->At4g35610 --ARR11(3)                                  <---------At4g35610 --ARR14(2)                             --------->YAB1                           --------->ARR11(3) ->ARR14(2)                      <---------ZAT18                                 <---------ARR11(3) ->ARR11(3)                      <---------ZAT14                              >>>>>>>>>TBF1 --GLK1(2)        <---------ATHB12--------->ANAC46                     --------->LBD16 ->ARR10    ------>ZmHOX2a(1)    --------->ZAT14           ---------->DOF2 >>>>>>>>>TBF1     *TSS   tcttcatgtttctccttcaaatcaactaatctctctgcgctataatcagatgatacagacacaaagccttctccgaagaagaagaactcgattaaactta  1409900                                                                                 <----------DOF2              <---------ANAC58                                                   <---------------AGL15              <---------ANAC46                                                   --------------->AGL15              <---------ANAC58                                                   <---------DAG2       ------>NtERF2              <---------AHL20(2)                            <-----------------AGL2      --------->LBD16        <---------AHL20(2)                                 <-----------------AGL1    --------->SPL7           --------->AHL20(2)               --------->AtLEC2  <-----------------AGL3  <-----------HVH21--------->ARR11(3)                  <---------ICU4       <----------DOF2  <---------SPL7   <---------AHL20(1)                --------->ARR11(3)     ------>ZmHOX2a(1) <---------RAP2.6(2)         --------->AHL20(1)      <---------ARR11(3)   <------------------------ANAC81 <---------ANAC58 <---------CCA1(2)         --------->ATHB12  ----------->GT1<---------MYB52(1) <---------ANAC58 ----------->TBP--------->AHL20(2) <---------CCA1(2)<---------ICU4         <--------   tttgcgtccggccatagcttatatattcaaataaaataaatcggcatcatttgtaaatcttgacatgtaaattatgtcctttactttttttggtcttttt  1410000                                                        <----------DOF2                                                    <------NtERF2                                                   ------>NtERF2                                                   <---------ATERF1(1)                                                   <---------DEAR3(2)                                                   --------->LBD16                                                  <---------DEAR3(1)                                                  --------->DEAR3(1)                                                  --------->RAP2.3(2)                                                  --------->ATERF1(2)                                                  <---------ATERF1(2)                                                 --------->ORA47(2)                                                 --------->RAP2.3(1)                                                 --------->ERF1                                                 <---------LBD16                                                 <------NtERF2                                                 --------->ATERF1(1)                                                 --------->DEAR4(2)                                                ------>NtERF2                                                <---------ATERF1(1)                                                <---------ERF1                                                <---------RRTF1(1)                                                <---------RAP2.3(1)                                               --------->DEAR3(1)                                               <---------RAP2.3(2)                                               <---------DEAR3(1)                                              --------->ATERF1(1)                            --------                                              --------->RAP2.3(1)                            <-------                                              <------NtERF2                                 <--------                                <---------ANAC58--------->ABI4(2)                        --------->AHL20(2)                                <---------ANAC58<---------RAP2.6(1)                     <---------YAB1                         <---------ANAC58    <---------ATERF1(1)                      <---------AHL20(2)                         <---------ANAC58   <---------DEAR3(1)                       --------->AHL20(2)                         <---------ANAC46  <---------LBD16     <-----------GT1       <---------AHL20(2)                   <----------DOF2 ----------->GT1--------->RAP2.3(3)             <---------AHL20(2) --DOF2     ---------->DOF2     <---------ANAC46<---------DEAR4(2)<----------DOF2<---------YAB1   tcaataacaggccttaaaacactttgggcttgtagcctggtaattctcggcgccggctcttttttttactttgttcccaaatttttatttattatttatt  1410100                                                                --------->ATHB12                                                                <--------ATHB1                                                                --------->ATHB51                                                               <---------YAB1                                                               --------->ICU4                                                               <---------ATHB51                                                               --------->AHL20(2)                                                          <---------AHL20(2)                                                         --------->AHL20(2)                                                        <---------YAB1                                                      --------->YAB1                                                      <---------ICU4                                                      <--------HAHB4                                                      --------->ATHB51                        --------->AHL20(2)            <---------AHL20(2)           <---------AHL20(2)                        --------->AHL20(1)            -------->ATHB1               --------->AHL20(1)                        <---------AHL20(1)            -------->HAHB4        --------->TOE2(3)                        <---------AHL20(2)           <---------ATHB51       ------->GAMYB                       <---------AHL20(2)            <---------YAB1      <-----------GT1                    <---------ICU4                 <---------ICU4     <---------REM1(1)                   --------->AHL20(2)              <--------HAHB4 <---------WOX13(1)     <---------TOE2(3) --------->AHL20(2)         <---------YAB1-------->HAHB4     <---------YAB1 --------->TOE2(3) <---------AHL20(2)             --------->ICU4<---------ICU4     --------->AHL20(2) ->AHL20(2)        <---------ATHB51             --------->YAB1 <---------AHL20(2) --------->AHL20(2) --AHL20(2)        --------->ICU4          --------->AHL20(2)--------->YAB1--------->MYB46(3) -AHL20(2) ----------->GT1             <---------YAB1--------->ICU4  <---------TOE2(3)      ---------   tttcattaacatatagtagaaataattaaatttcttagattacgattaattcataattattaaaaataattgatgtaaccacaattttattgttttgtta  1410200                                                                                   <---------AHL20(2)                                                                                  --------->AHL20(2)                                                                           --------->ATHB51                                                                           <---------AHL20(2)                                                                           --------->AHL20(2)                                                                           <---------ICU4                                                     --------->YAB1       --------->ICU4                                         --------->AHL20(2)            --------->AHL20(2)             --------->TOE1(3)          --------->YAB1                 <---------AHL20(2)   <--------   ----------->GT1        <---------GLK1(2)--------->YAB1             --------->AHL20(2) --------->TOE2(3) -->GT1      --------->TOE2(3)<----------DOF2  --------->GLK1(2)  ------->TEIL --------->YAB1   ataacatgtgaaaaacctaaaaatatcaaattcttttttccaaaataataatctattagaaacacatgaatatttaattatttataaaatttcttaactg  1410300                                                                  <---------ARR11(3)                                                                  --------->ARR11(1)                                                                  --------->ARR11(3)                                                                ----------->ARR10                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                     --------->ARR14(2)          <xxxxxxxxxxxxxxxxsmallRNA(i)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------->CCA1(2)                 xxxxxxxxxxxxxxxx>smallRNA(i)             --------->ARR14(2)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             <---------ARR14(2)             <xxxxxxxxxxxxxxxxsmallRNA(i)                           <-             <---------ARR11(3)      ----------->GT1 ----------->HVH21                    <----------             --------->ARR11(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->CCA1(2)   <---------YAB1     <---------ANAC46<---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---------->DOF2     <- ---GT1      --------->ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(i)     <---------TOE2(3)  <---------GLK1(2)   tttagttttgtataagatatggagaactggtatggaaaactgaaaatcgaccgagatgacaaggctaagatatgagtctaaaaaagattatttttcattc  1410400  Previous    Next  AGI:  At5g04850.1    Description:  VPS60.2. similar to VPS60.1 [Arabidopsis thaliana] (TAIR:AT3G10640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15822.1); contains InterPro domain Snf7; (InterPro:IPR005024) Range:  from: 1408059    to: 1409893    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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