Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <---------ZAT14                <-                                                            <------NtERF2                         ---                                                           --------->LBD16           --------->ANAC58                                                          --------->LBD16            --------->ANAC58                                 <---------ANAC58         --------->ANAC46    ----------->RAV1(1) ---           ---------->DOF2       <---------ANAC58        <---------LBD16   --------->ANAC58     -----       --------->ZAT18       <---------ANAC58       <---------ALFIN1--------->At4g35610         -----      --------->ALFIN1       <---------ANAC58       --------->ZAT6  --------->ZAT14  --------->ANAC46 ------ZmHOX2a(2)        <---------At4g35610     ----------->HVH21  <---------At4g35610        <----- ------->ARR11(3) --------->GLK1(2)       <------ZmHOX2a(1)------>NtERF2   --------->ANAC58   ------>NtERF2   agatcaaggtggacaaagagactcttgagatgcttgcttctctaggaatgtctgacactcccggcatctctgcagtcgagccacaacaagctatggcacc  1389600                           <---------HSFB2a(2)                           --------->HSFB2a(2)                         --------->ANAC58                         --------->ANAC58                    --------->ANAC58                    <------NtERF2             <---------MYB46(3)               <----------DOF2            --------->ALFIN1                  --------------------->WRI1      <----------DOF2 <---------ZAT18        <---------ANAC58 --------ATHB12     --------->ANAC58         <---------ANAC58 --->MYB83  <---------DEAR3(1)   <---------ARR11(3)             <---------ATHB12 --->MYB46(1)--------->ABI4(2)   <---------ARR14(2)           --------->WOX13(1)                    < ---->MYB46(3)   <------NtERF2   --------->ARR14(2)     --------->At4g35610                      <--- ---->AtMYB61--------->MYB55(2)  --------->ARR11(3)   --------->YAB1                  <----------DOF2 -NtERF2    <---------AtMYB61  ----------->ARR10     <---------YAB1     --------->MYB52(1)  <--------   aatcgctgctttcggtggtggcagggcacccagaagatactgagatggctttgttatcatcagccaatcaaggcaaacgactggctctcttttttcacag  1389700                                                                                             --------                                                                                        <---------ANAC58                ------->MYC3                                                            <---------ANAC46 ---------TOE1(3)                                                                       <---------ANAC58 ------MYB52(1) <-------MYC3               <----------DOF2                           <----------DOF2 ---GT1 ---------->DOF2       ----------->GT1 <---------YAB1                      --------->GLK1(2)   ttagggataagaaagacatgtgtgttcttggaaagtttattgtttcttttgattcaagtttttatgtcttaaactcagagtgagactctttcgtattaat  1389800                                                                     <------ZmHOX2a(2)                                                                     --------->CCA1(2)                                                                    --------->ARR14(2)                                                                    --------->AGP1                                                                    <---------ARR14(2)                                                       <----------DOF2                                                    --------->ARR11(3)                                                    <---------AHL20(1)                                                    <---------ARR11(3)------>ZmHOX2a(2)  ----------->GT1                 ----------------->AGL3       <-----------GT1      --------->At4g35610<---------ANAC46                 <-----------------AGL3    ----------->GT1  <---------ANAC58     --------->ATHB12 ->ICU4   <---------ANAC46 ----------->GT1 --------->YAB1   <---------ANAC58    <-------TEIL   ------   gggttttgagttatgtggaaccaaaattggagttaaaactttcgatagtaacaatatcttttgcttatcagatccgagttgattcatgggggagaaaata  1389900                             <---------ANAC46                   --------->HSFC1(1)                   <---------HSFB2a(2)                   <---------HSFC1(1)--------->ANAC55(2)                   --------->HSFB2a(2)                           <------MYB83         ----------->HVH21   <------MYB46(1)                     ----------->GT1       ----------->RAV1(2)   ----------->GT1                     <------MYB46(1)        <------ZmHOX2a(1)       <---------At4g35610   <------MYB83          <---------HSFB2a(2)                 --------->ICU4       --------->At4g35610  --------->MYB59     <----------DOF2 --------->MYB59       <---------TOE2(3)     <-----------GT1  ---------->DOF2<---------ANAC55(2)  ------------>CBF     ----------->GT1    --- --->RVE1(1)   <----------DOF2      <---------ICU4 --------->HSFB2a(2)       ---------->DOF2 <-------   tcgaaattcacctgaaactttctcgaaagttgggttaatacttatttggactttgagaagggcaatttggtaaaatttcaaaagttataaggattatgtt  1390000                                                                                                    -                                                                                                    <                                                                                                    -                                                                      ---------->ID1               --                                   *TSS                             <---------REM1(1)        <-------                                   ---------->DOF2               --------->ALFIN1    <---------ALFIN1    <-----------GT1 --------->CCA1(2)                          <---------ANAC46    <---------ALFIN1-- -------->GT1      <---------ARR11(3)                          <---------ANAC58--------->At4g35610 -- --YAB1            --------->ARR11(3)   --------->CCA1(2)      <---------ANAC58<---------At4g35610<--   tcgttataaccagagagaagagatactagagagaagggaaagatagagaatggataatggagggagcgtgttgtcgctctctgctccacacttcccttac  1390100                <-----------HVH21                                      ======================RAV               --------->TGA1a                                         --------->MYB52(1)               ==============================================bZIP_DOF --------->AtMYB61               --------->bZIP60(1)                              --------->ANAC58               <---------TGA1a                                  --------->ANAC58               <---------O2           <---------ARR11(1)        --------->ANAC46               --------->O2  ------>NtERF2                      --------->DEAR3(1)               --------->TGA2(1)      <---------ARR14(2)     --------->AtMYB61               --------->ANAC58       --------->ARR14(2)     --------->DEAR3(1)  ----------->RAV1(2)               --------->ANAC58<---------ANAC58              <---------ALFIN1 --------->HSFB2a(1)            --------->DEAR3(1) <---------ANAC46             --------->MYB46(3)<---------HSFC1(2)   ------>NtERF2<-----------TGA1      <---------ARR11(3)    <---------MYB55(2)--------->HSFC1(2)  --------->DEAR3(1)         --------->ABI4(2)            --------->AtMYB61 <---------ARR14(2)  <---------ALFIN1         <---------MYB52(1)             ------->GAMYB----------->RAV1(1) ----->NtERF2 <-----------STF1<------NtERF2         --------->ANAC46  ------->GAMYB------>ZmHOX2a(1) ---------ATERF1(1)     <---------LBD16             --------->ANAC58 --------->MYB46(3) -------->LBD16<---------TGA2(1)      <-----------ARR10  --------->MYB46(3) <---------GLK1(2)       < ------->ANAC58--------->ANAC46<---------ANAC58     --------->ANAC58 <---------MYB55(2)        ------ --MYB52(1) ----------->HVH21<---------MYB46(3)   ---------->DOF2   --------->ANAC58         -------- ------->ANAC46<---------bZIP60(1)    --------->ARR11(3) <---------MYB55(2) --------->ARR14(2) ------ ------->ANAC58--------->bZIP60(2)   <---------CCA1(2)  -------->P  --------->ANAC58        ------>ZmHOX2a(1) -------LBD16------>NtERF2--------->LBD16        <---------MYB52(1) -------->P<---------HSFB2a(1)  --   tccgccaccattctccgacgtcactctccggtggcttccatatctttctcccttaagcaaccaccaccgcaaccaccagaacctcctgagagtcctcctg  1390200          --------->LBD16         --------->LBD16        <---------LBD16       <------NtERF2      --------->ABI4(1)      ------>NtERF2      <---------ATERF1(1)      <---------SPL7     <---------ALFIN1     --------->RAP2.3(2)     --------->DEAR3(1)     <---------ATERF1(2)     --------->DREB2C(2)     --------->RAP2.3(3)     --------->RRTF1(2)     --------->ATERF1(2)    --------->RAP2.3(1)    --------->ERF1    --------->ATERF1(1)    --------->DEAR4(2)    --------->ORA47(2)    --------->RRTF1(1)   --------->At4g35610   <---------At4g35610   --------->LBD16   <---------ATERF1(1)   --------->ABI4(1)   ------>NtERF2  --------->ANAC46                                                                           <-------  --------->DEAR3(1)                                                                        ---------  <---------ALFIN1                                                                          --------- ---------ATERF1(1)                                                              <---------YAB1 ----->HVH21                                                                     <---------TOE2(3) --->RAV1(2)                                            --------->ARR14(2)       <---------TOE1(3)--- >ZmHOX2a(1)   --------->GLK1(1)                 ------>ZmHOX2a(1)   ---------->DOF2        --------- ------->AtMYB61             <<<<<<<<<TBF1  ------>ZmHOX2a(1)      ------>ZmHOX2a(1)     <---------ZAT18   acctccgccgcccggagaaatctattggttcttcttcatcttcttcctctccttcccctatcccttctcctaaaacccctcttaagattaatccactcaa  1390300                                                                                                    -                                                                                                    -     --------->MYB46(3)                                                                      <-------   <-----------GT1                                                                     <---------ZAT2 --ATHB12                                      <---------ANAC46                        --------->ZAT2 >ANAC58 <---------ATHB12             --------->YAB1---------->DOF2                   --------->ANAC58 >ANAC58------>MYB83                 <---------ATHB12                                 --------->ANAC58 -------->GT1<----------DOF2       --------->WOX13(1)                    ------>ZmHOX2a(1)<-------TEIL >ANAC46------>MYB46(1)    ------>ZmHOX2a(1)<---------ARR14(2)  <----------DOF2       --------->ANAC46   gggtttaaccaatcgctcttctgtgtctcctcttgttcaatcagaggtttcgagtaaagtttcttcctttggctcctctctagcatccaagctacgtttg  1390400                                         ------>ZmHOX2a(1)                                       ----------->RAV1(2)                                       <-----------------AGL1                                     <---------ALFIN1                                   <---------ATERF1(1)                                         ------                                  --------->DEAR3(1)                                         <-------                               --------->DEAR3(1)                                           ---------                               <---------ALFIN1         --------->MYB46(3)                <---------ABI4(2)                            <---------ALFIN1           ------>MYB83                       --------->MYB46(3)                       ------>ZmHOX2a(1) <-----------RAV1(1)                         --------->ANAC58                   <---------ALFIN1------>NtERF2       ------>MYB46(1)               --------->ANAC58                 ------>ZmHOX2a(1)--------->ANAC46     --------->ANAC58              --------->ANAC46      <---------ARR11(3)  ------>ZmHOX2a(1)            --------->ANAC46              <---------ANAC55(2)    --------->ANAC58  <---------ALFIN1------>NtERF2  --------->AtMYB61               --------->ANAC55(1)    --------->ANAC58------>ZmHOX2a(1)--------->DEAR3(1)--------->ANAC58              --------->ANAC55(2) -------->ANAC58<---------ALFIN1  <---------ALFIN1  --------->MYB46(3)     <---------ANAC46--------->AtMYB61 -------->ANAC58<xxxxxxxxxxxxxxxxsmallRNA(se3)<---------TOE2(3) --------->LBD16 ----------->HVH21   > --MYB52(1)   ------>ZmHOX2a(1)--------->AtMYB61<------ZmHOX2a(1)         <---------LBD16 <---------MYB55(2)   tccagcaagctctctcctcctcctcctcctccacctccgcctcctgttgaggaaaccacccaattccgagatgagtttcggagtgacacgaaaccaccgg  1390500  Previous    Next  AGI:  At5g04800.1    Description:  40S ribosomal protein S17 (RPS17D). Identical to 40S ribosomal protein S17-4 (RPS17D) [Arabidopsis Thaliana] (GB:Q9LZ17;GB:Q8LAE8); similar to 40S ribosomal protein S17 (RPS17A) [Arabidopsis thaliana] (TAIR:AT2G04390.1); similar to unknown [Populus trichocarpa] (GB:ABK94799.1); similar to unknown [Populus trichocarpa] (GB:ABK93281.1); contains InterPro domain Ribosomal protein S17e; (InterPro:IPR001210) Range:  from: 1388485    to: 1389849    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g04810.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G05670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62398.1); similar to H0913C04.4 [Oryza sativa (indica cultivar-group)] (GB:CAJ86163.1); similar to pentatricopeptide repeat protein [Zea mays] (GB:NP_001105869.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 1390035    to: 1393931    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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